genome.fa.s1.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  107  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34749074--34749219	50	2.9	50	72	1	150	34	17	19	27	1.95
34750637--34750811	50	3.5	50	70	6	165	33	22	21	21	1.97
34751310--34759845	50	172.0	50	66	4	2885	32	21	20	25	1.97
34751427--34751949	249	2.1	249	86	0	733	33	21	19	25	1.97
34751527--34751851	149	2.2	150	83	4	424	34	21	19	25	1.96
34751678--34752340	199	3.4	198	82	5	688	32	22	19	25	1.97
34751527--34752050	249	2.1	249	79	2	543	33	21	18	25	1.96
34752173--34752340	92	1.8	92	84	5	232	33	19	17	28	1.95
34752174--34752488	148	2.2	142	81	7	368	33	18	19	28	1.95
34752383--34753861	492	3.0	492	92	1	2295	31	21	20	26	1.98
34753929--34754107	89	2.0	90	84	3	236	36	18	22	22	1.95
34754019--34758088	100	40.9	100	81	2	4253	33	21	20	25	1.97
34753849--34758088	199	21.4	199	81	3	4392	33	21	20	25	1.97
34758067--34760573	200	12.6	199	77	3	2216	31	20	20	24	1.96
34760053--34760529	50	9.6	50	67	4	257	33	20	20	25	1.97
34760028--34760573	100	5.5	99	82	3	623	32	21	21	25	1.98
34765904--34769201	50	66.4	49	65	7	580	33	21	20	25	1.97
34765867--34774251	100	83.9	100	78	4	6966	32	21	20	25	1.97
34765862--34769140	199	16.5	198	81	3	3333	32	21	20	25	1.97
34767233--34770196	50	59.9	49	65	9	220	32	21	19	25	1.97
34769214--34774251	50	101.1	50	66	6	1879	32	21	20	25	1.97
34779493--34788271	100	88.2	100	85	3	8815	32	20	20	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34780032--34780214	90	2.0	91	82	3	226	34	19	20	25	1.96
34783424--34783783	50	7.2	50	65	12	191	32	22	20	23	1.98
34784674--34787328	50	53.3	50	63	6	409	33	20	20	25	1.97
34787808--34788271	50	9.3	50	68	3	254	33	22	20	23	1.97
34788937--34789070	48	2.7	50	75	4	137	35	20	20	23	1.96
34788937--34791658	100	27.3	100	86	1	2965	33	20	21	24	1.97
34789389--34792107	449	6.1	449	71	4	1459	33	20	21	25	1.97
34791586--34792180	299	2.0	300	85	1	816	32	20	21	26	1.97
34788937--34792191	50	65.3	50	68	3	1526	33	20	21	25	1.97
34792291--34792405	45	2.6	44	84	4	142	25	21	26	26	2.00
34793981--34794038	3	19.3	3	100	0	116	32	0	0	67	0.91
34800821--34800880	12	5.5	11	75	16	54	25	5	0	70	1.08
34800825--34800880	21	2.7	20	78	15	60	23	5	0	71	1.06
34800822--34800884	17	3.7	17	74	18	60	23	4	0	71	1.05
34821724--34821792	26	2.6	26	88	6	95	26	23	18	31	1.97
34821912--34821975	31	2.1	31	100	0	128	37	18	9	34	1.83
34823098--34823142	14	3.1	14	84	6	54	4	20	0	75	0.97
34823127--34823196	6	11.7	6	87	0	50	11	5	8	74	1.22
34823125--34823202	23	3.3	24	73	5	61	10	5	8	75	1.17
34829180--34829611	214	2.0	215	99	0	848	17	14	39	28	1.89
34829939--34829999	2	30.5	2	96	0	113	49	0	1	49	1.10
34837391--34837439	20	2.7	18	77	22	57	51	4	2	42	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34839879--34839995	61	1.9	61	84	5	155	41	8	14	35	1.77
34845576--34845615	20	2.0	20	90	0	62	27	10	12	50	1.72
34845561--34845627	34	1.9	35	90	3	109	31	8	13	46	1.74
34845555--34845631	14	5.0	15	71	20	52	33	9	14	42	1.77
34846928--34847115	96	2.0	96	84	0	250	32	17	14	35	1.90
34856182--34856234	25	2.2	25	86	3	72	50	7	7	33	1.59
34856191--34856241	25	2.0	25	100	0	102	43	7	13	35	1.73
34871799--34871853	27	2.1	26	80	16	60	65	1	7	25	1.28
34871858--34871899	22	1.9	22	90	0	66	69	0	9	21	1.17
34871880--34871961	38	2.2	37	80	2	92	68	1	7	23	1.22
34873296--34873325	15	2.0	15	93	0	51	0	3	20	76	0.92
34873295--34873325	16	2.0	15	93	6	53	0	3	19	77	0.90
34873481--34874240	44	16.7	44	73	9	461	29	19	18	33	1.95
34873513--34873926	89	4.7	89	83	2	440	28	19	18	33	1.96
34873465--34873958	133	3.7	133	78	4	462	28	19	18	33	1.96
34874119--34874251	46	2.7	51	71	18	136	30	16	18	33	1.94
34874115--34874287	51	3.5	50	72	15	144	31	17	17	32	1.94
34880284--34880738	44	10.3	44	79	1	433	28	19	17	34	1.95
34880284--34880731	89	5.1	88	82	1	484	28	19	17	34	1.95
34880293--34880738	133	3.4	133	81	2	464	28	19	17	34	1.95
34881986--34882024	20	2.0	20	85	5	53	56	5	7	30	1.49
34885468--34885509	6	7.0	6	100	0	84	33	0	16	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34888409--34888441	17	2.0	17	88	5	50	57	0	0	42	0.98
34892095--34892311	76	2.9	75	81	5	240	40	18	14	26	1.89
34892622--34892651	2	14.5	2	93	6	51	50	3	0	46	1.18
34893470--34893527	28	2.1	28	100	0	116	27	10	6	55	1.59
34893755--34893957	76	2.7	75	76	6	205	36	19	17	26	1.94
34896813--34896928	43	2.7	43	81	8	137	26	14	28	30	1.95
34897254--34897289	15	2.3	16	90	4	56	36	5	2	55	1.38
34897254--34897305	16	3.3	15	84	7	59	36	7	1	53	1.41
34897254--34897305	15	3.3	14	78	19	50	36	7	1	53	1.41
34897704--34897743	20	2.0	19	85	9	53	35	2	5	57	1.34
34899882--34899927	19	2.4	21	79	20	64	50	0	0	50	1.00
34901090--34901132	23	1.9	22	90	4	68	46	2	6	44	1.43
34901104--34901177	37	2.0	37	97	0	139	35	1	10	52	1.45
34904019--34904074	10	5.8	9	81	10	58	42	1	0	55	1.10
34904020--34904078	20	3.0	20	78	14	68	42	1	0	55	1.09
34905190--34905227	18	2.1	18	100	0	76	44	0	15	39	1.47
34922173--34922234	26	2.4	27	84	10	76	41	12	11	33	1.79
34922173--34922248	26	2.9	26	82	7	75	40	10	15	32	1.82
34927725--34927762	3	13.0	3	83	5	51	28	2	0	68	1.03
34938801--34938860	16	3.8	16	95	0	102	33	0	36	30	1.58
34938839--34938948	45	2.6	43	74	9	111	34	5	27	32	1.80
34939123--34939169	15	3.3	15	72	22	55	46	10	0	42	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34939125--34939170	12	3.3	14	74	20	51	45	10	0	43	1.39
34950310--34950665	87	4.1	87	93	0	604	28	23	25	23	2.00
34950766--34951054	44	6.7	44	69	13	152	29	20	23	26	1.99
34951835--34951868	12	2.7	13	86	9	52	0	11	14	73	1.10
34955900--34956092	41	4.7	41	77	3	158	18	17	25	38	1.92
34955881--34956091	82	2.6	82	78	6	205	18	18	25	37	1.94
34964289--34964325	19	2.1	18	85	14	51	29	0	5	64	1.15
34965537--34965591	20	2.7	19	78	15	58	56	10	14	18	1.67
34965596--34965635	20	2.0	21	90	5	64	55	20	12	12	1.69
34965872--34965924	19	2.7	21	75	16	60	52	3	11	32	1.55
34967374--34967414	21	1.9	22	90	5	66	36	0	4	58	1.20
34969287--34969327	21	1.9	22	90	5	66	31	2	0	65	1.05
34971783--34971858	32	2.4	32	91	2	118	17	15	6	60	1.55
34974275--34974338	29	2.2	30	94	2	112	39	12	25	23	1.90
34977880--34977929	24	2.1	24	100	0	100	44	4	20	32	1.70
34978090--34978122	17	1.9	17	100	0	66	39	12	12	36	1.80
34984521--34984563	22	2.0	22	85	0	59	32	23	16	27	1.96
34993061--34993403	189	1.8	189	92	1	580	29	14	15	39	1.88
34993777--34993834	29	2.0	29	100	0	116	27	17	24	31	1.97
34994346--34994421	34	2.3	35	81	6	95	26	11	15	46	1.81
34994595--34994795	97	2.1	97	89	1	305	31	19	13	34	1.91
34995825--34995931	42	2.5	42	77	3	117	24	17	18	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34995857--34996060	43	4.8	43	76	6	137	22	18	21	37	1.94
34995836--34996060	86	2.6	85	76	6	222	22	19	20	37	1.94
35007275--35007324	5	9.8	5	91	4	82	0	20	0	80	0.72
35016961--35017003	21	2.0	21	90	0	68	23	23	34	18	1.96
35017705--35017735	15	2.1	15	100	0	62	74	6	0	19	1.03
35018261--35018294	5	6.8	5	100	0	68	17	0	0	82	0.67
35022693--35022798	44	2.4	44	90	3	160	26	32	19	21	1.97
35023070--35023135	33	2.0	33	100	0	132	24	24	18	33	1.97
35023115--35023370	128	2.0	128	91	3	417	24	22	20	32	1.97
35024595--35024628	6	5.3	6	89	10	50	14	17	0	67	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141