genome.fa.s1.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  112  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36038087--36038593	262	1.9	262	95	0	915	33	17	13	35	1.89
36039563--36039612	25	2.0	25	96	0	91	30	24	10	36	1.88
36039852--36039919	28	2.4	28	85	0	82	44	16	7	32	1.75
36039873--36039938	28	2.4	28	86	0	96	37	18	9	34	1.82
36049512--36049729	95	2.3	95	84	5	269	43	3	15	37	1.65
36049776--36050076	126	2.4	125	88	2	451	32	18	22	25	1.97
36050024--36050107	44	1.9	44	95	0	150	27	28	22	21	1.99
36054586--36055206	310	2.0	310	99	0	1233	33	21	15	28	1.94
36055940--36055996	11	5.1	11	78	2	51	43	0	31	24	1.54
36055978--36056005	12	2.3	12	100	0	56	50	0	28	21	1.49
36059320--36059387	16	4.3	15	92	5	82	33	0	33	32	1.58
36059330--36059389	16	3.8	16	93	4	95	35	0	35	30	1.58
36059368--36059477	45	2.6	43	80	9	129	33	5	29	31	1.80
36059652--36059698	15	3.3	15	72	22	55	46	10	0	42	1.38
36059654--36059699	12	3.3	14	74	20	51	45	10	0	43	1.39
36079966--36080012	12	4.2	12	76	15	55	31	2	19	46	1.61
36079959--36080028	9	7.1	9	73	17	50	30	2	20	47	1.64
36079959--36080014	21	2.7	21	91	0	85	32	1	19	46	1.61
36079919--36080115	91	2.2	88	80	9	218	35	2	17	45	1.60
36080132--36080177	9	5.1	9	97	0	83	34	2	21	41	1.66
36080169--36080244	39	1.9	40	91	2	127	39	9	14	36	1.78
36080236--36080348	27	4.4	27	73	17	107	31	0	19	48	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36080237--36080327	47	1.9	47	95	0	164	32	0	17	49	1.47
36080307--36080354	9	5.3	9	82	9	62	27	0	25	47	1.52
36080298--36080354	27	2.1	27	96	0	105	28	0	22	49	1.50
36081111--36081145	18	2.1	18	89	10	56	65	5	0	28	1.15
36083359--36083445	7	12.4	7	76	13	54	36	43	0	19	1.51
36083356--36083430	20	3.6	21	80	7	80	36	45	0	18	1.50
36083354--36083470	14	8.3	14	72	11	78	36	41	0	22	1.54
36083356--36083449	42	2.2	42	82	1	116	38	42	0	19	1.51
36083610--36083644	13	2.7	13	90	0	52	34	48	0	17	1.47
36083636--36083685	22	2.3	22	86	6	66	38	38	0	24	1.56
36086314--36086356	21	2.0	21	86	8	61	65	11	4	18	1.42
36086834--36086872	9	4.3	9	80	0	51	53	10	2	33	1.48
36086958--36087024	20	3.4	19	80	15	75	52	5	0	41	1.26
36087521--36087560	13	3.0	14	92	7	66	87	0	12	0	0.54
36087521--36087560	7	6.0	7	88	11	66	87	0	12	0	0.54
36087521--36087560	20	2.0	20	95	0	71	87	0	12	0	0.54
36087795--36087850	23	2.5	23	80	8	62	73	1	8	16	1.17
36088258--36088305	20	2.3	20	82	3	60	27	14	6	52	1.66
36090546--36090592	18	2.5	19	89	3	78	40	0	2	57	1.11
36098373--36098421	20	2.4	21	82	3	55	53	6	0	40	1.26
36098412--36098475	21	2.9	22	74	21	62	54	3	1	40	1.25
36098373--36098495	65	1.9	64	80	8	142	56	5	0	37	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36107700--36107748	18	2.7	18	78	12	55	32	4	12	51	1.58
36113664--36113751	7	12.4	7	95	2	158	60	13	0	26	1.34
36113753--36113796	7	6.3	7	83	0	52	40	0	27	31	1.56
36113652--36113792	21	6.7	21	83	1	66	53	9	9	28	1.63
36118935--36119077	23	5.8	24	77	16	157	30	0	23	46	1.53
36118935--36119077	51	2.8	51	79	15	161	30	0	23	46	1.53
36118968--36119059	29	3.2	29	80	11	118	28	0	27	44	1.55
36119080--36119264	71	2.6	71	91	0	307	43	13	3	39	1.60
36119666--36119700	18	1.9	18	88	0	52	31	8	34	25	1.86
36120352--36120376	7	3.6	7	100	0	50	60	12	0	28	1.32
36121317--36121369	11	5.1	10	77	8	52	71	0	0	28	0.86
36121317--36121382	32	2.1	32	94	2	116	68	0	0	31	0.90
36121384--36121498	51	2.3	51	95	0	203	42	0	30	26	1.56
36122043--36122087	18	2.6	17	83	13	56	55	2	2	40	1.24
36122046--36122095	18	2.8	18	74	14	50	60	2	2	36	1.20
36126148--36126172	5	5.0	5	100	0	50	0	20	0	80	0.72
36128868--36128898	2	15.5	2	100	0	62	48	0	0	51	1.00
36129538--36129564	14	1.9	14	100	0	54	81	0	18	0	0.69
36147853--36147881	13	2.1	14	93	6	51	41	0	0	58	0.98
36150641--36150685	17	2.6	17	96	0	81	37	15	17	28	1.91
36151730--36151780	24	2.1	25	85	3	68	52	1	5	39	1.37
36152220--36152269	20	2.7	19	80	20	61	42	2	2	54	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36152248--36152367	62	1.9	62	80	12	140	39	3	5	52	1.40
36159539--36159588	24	2.1	24	92	0	82	40	4	24	32	1.73
36163818--36163867	24	2.1	24	96	0	91	42	4	22	32	1.72
36171742--36171783	20	2.1	20	100	0	84	19	16	19	45	1.86
36173772--36173834	30	2.1	30	96	0	117	26	9	12	50	1.71
36177703--36177746	22	2.0	22	95	0	79	31	29	9	29	1.88
36178158--36178188	15	2.1	15	100	0	62	38	38	6	16	1.74
36178631--36178661	16	1.9	16	100	0	62	64	0	16	19	1.29
36179646--36179685	12	3.4	12	89	3	55	27	12	17	42	1.85
36181011--36181051	22	1.9	21	90	5	64	65	0	7	26	1.18
36203085--36203110	2	13.0	2	100	0	52	50	0	0	50	1.00
36210091--36210132	22	2.0	20	86	9	57	26	11	4	57	1.54
36215322--36215356	16	2.1	17	89	5	54	42	8	0	48	1.33
36224015--36224055	19	2.3	18	84	12	57	17	4	7	70	1.28
36224800--36224854	11	4.8	12	78	14	55	25	29	0	45	1.54
36224799--36224854	22	2.5	23	82	11	71	25	28	0	46	1.53
36227406--36227619	50	4.3	50	100	0	428	28	24	15	31	1.96
36227602--36227713	51	2.5	43	81	17	129	30	28	14	26	1.95
36227617--36227727	51	2.2	51	96	0	204	31	27	14	26	1.95
36230371--36230410	18	2.2	18	90	0	62	20	30	7	42	1.79
36230652--36230698	21	2.2	21	85	7	60	38	38	17	6	1.75
36230665--36230706	21	2.0	21	85	0	57	38	45	14	2	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36230956--36231166	33	6.4	33	89	4	311	40	37	1	19	1.61
36231145--36231282	21	6.4	22	74	13	99	51	25	0	23	1.48
36231200--36231311	43	2.5	44	83	9	140	52	25	0	20	1.52
36231341--36231654	43	7.0	44	78	12	268	47	34	0	17	1.54
36231376--36231470	50	1.9	50	84	2	129	49	33	2	14	1.56
36231351--36231620	93	2.9	93	81	9	250	47	34	1	17	1.55
36231375--36231486	50	2.2	51	79	7	122	47	35	1	15	1.56
36231340--36231656	22	14.2	21	76	14	228	47	34	0	17	1.54
36231136--36231660	22	23.7	21	70	17	115	48	31	0	20	1.55
36234664--36234999	125	2.7	125	84	1	458	30	23	16	29	1.96
36236658--36236724	32	2.1	32	97	0	125	46	13	7	32	1.71
36240578--36240769	96	2.0	96	98	0	375	35	18	13	32	1.90
36242353--36242380	2	14.0	2	100	0	56	50	0	0	50	1.00
36243207--36243240	9	3.6	10	88	11	54	70	0	0	29	0.87
36243197--36243240	18	2.4	17	88	11	61	68	0	0	31	0.90
36244664--36244703	17	2.6	16	88	11	57	0	12	5	82	0.82
36245582--36245786	43	4.8	42	92	2	347	33	22	21	22	1.98
36245854--36245966	56	2.0	57	98	1	219	23	19	10	46	1.80
36246216--36246263	21	2.3	21	81	0	60	6	45	18	29	1.74
36256279--36256483	42	4.8	42	88	7	315	22	21	22	33	1.97
36256279--36256495	85	2.5	85	87	6	314	22	21	22	33	1.97
36259755--36260103	174	2.0	175	99	0	691	24	25	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36264248--36264278	14	2.2	14	94	0	53	41	0	9	48	1.36
36265359--36265393	17	2.1	18	89	10	56	48	0	8	42	1.33
36266328--36266366	9	4.3	9	87	12	62	35	0	0	64	0.94
36273619--36273647	4	7.2	4	100	0	58	48	0	0	51	1.00
36274990--36275182	63	3.1	63	60	15	146	42	4	10	42	1.59
36274973--36275224	125	2.0	126	99	0	497	40	5	11	43	1.64
36274993--36275184	62	3.1	62	60	15	142	42	4	10	42	1.59
36285194--36285236	23	1.9	22	85	4	59	9	20	0	69	1.15
36286398--36286647	30	8.3	30	88	0	374	29	11	17	42	1.83
36286398--36286960	60	9.6	60	75	5	380	29	9	15	39	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141