genome.fa.s1.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  81  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26475882--26476053	19	8.7	22	74	16	116	38	8	14	38	1.76
26481505--26481547	8	5.8	8	83	10	56	83	13	2	0	0.74
26481507--26481547	15	2.8	15	82	10	50	85	12	2	0	0.70
26503971--26504014	22	1.9	24	86	9	65	56	11	6	25	1.58
26506180--26506238	27	2.2	27	87	6	84	59	0	6	33	1.24
26507087--26507152	31	2.2	30	78	5	71	45	12	9	33	1.73
26507142--26507220	39	2.0	41	88	11	121	32	6	1	59	1.31
26507142--26507220	40	2.0	39	85	11	108	32	6	1	59	1.31
26507143--26507237	39	2.4	38	83	14	115	33	5	2	58	1.32
26507723--26507760	18	2.1	19	85	5	51	63	0	2	34	1.09
26516568--26516629	31	2.0	30	84	3	79	32	3	1	62	1.20
26521222--26521256	16	2.2	16	100	0	70	34	31	0	34	1.58
26523298--26523435	42	3.3	42	81	6	154	18	22	15	43	1.88
26523284--26523437	21	7.3	21	70	2	85	18	23	16	42	1.89
26525103--26525134	15	2.1	15	100	0	64	43	18	18	18	1.88
26530775--26530802	6	4.7	6	100	0	56	17	0	0	82	0.68
26531570--26531606	13	2.7	14	84	16	51	67	5	5	21	1.31
26536138--26536176	19	2.0	20	90	5	62	28	10	12	48	1.74
26536183--26536342	80	2.0	80	98	0	311	31	13	12	43	1.81
26540756--26540823	32	2.1	33	81	8	86	26	7	16	50	1.71
26552656--26552688	15	2.2	15	100	0	66	60	12	0	27	1.32
26553046--26553118	27	2.7	25	73	24	60	54	6	2	35	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26554799--26554990	84	2.3	84	89	0	303	28	22	20	28	1.99
26554794--26555250	44	10.7	42	71	13	206	27	22	20	29	1.98
26554874--26555123	133	1.9	128	81	10	301	26	22	20	30	1.98
26555351--26555472	44	2.7	45	81	13	153	25	25	19	29	1.99
26566841--26566873	15	2.2	15	94	0	57	63	12	0	24	1.28
26567247--26567292	23	2.0	24	91	4	76	65	2	2	30	1.16
26567259--26567306	23	2.1	23	84	7	62	64	4	2	29	1.23
26569307--26569362	21	2.6	22	77	8	62	55	3	1	39	1.28
26570792--26570833	4	10.8	4	85	14	61	73	0	0	26	0.83
26570801--26570846	19	2.4	20	86	13	62	73	0	2	23	0.94
26570792--26570835	19	2.5	17	80	16	54	72	0	0	27	0.85
26572935--26572963	8	3.6	8	100	0	58	24	13	27	34	1.93
26573050--26573125	23	3.3	23	98	0	143	19	21	28	30	1.97
26577589--26577843	33	7.8	33	72	4	156	24	41	3	30	1.73
26577601--26577835	66	3.6	65	79	6	244	23	42	3	30	1.71
26579561--26579593	16	2.1	15	94	5	57	24	12	9	54	1.66
26581042--26581070	15	1.9	15	100	0	58	31	6	27	34	1.83
26582264--26582306	16	2.7	16	81	0	50	32	4	18	44	1.71
26584247--26584309	23	2.8	22	72	9	65	49	0	0	50	1.00
26584250--26584309	22	2.6	24	76	7	72	48	0	0	51	1.00
26594934--26594980	16	2.9	16	84	9	51	76	4	4	14	1.09
26597329--26597366	14	2.6	15	87	8	60	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26603818--26603867	16	3.1	16	77	8	57	36	2	4	58	1.29
26605484--26605540	15	3.5	15	71	17	51	49	0	3	47	1.18
26615879--26615964	44	2.0	44	85	0	118	24	0	24	51	1.49
26620293--26620342	12	4.0	13	77	17	52	82	2	16	0	0.77
26623540--26623635	47	2.1	46	86	5	131	34	6	21	37	1.79
26625405--26625432	3	9.3	3	100	0	56	67	0	0	32	0.91
26629519--26629582	21	3.1	21	75	18	62	65	4	9	20	1.39
26632041--26632065	13	1.9	13	100	0	50	48	24	0	28	1.52
26633683--26633841	42	3.7	42	77	11	158	33	11	19	35	1.88
26633723--26633826	47	2.2	49	85	3	140	35	10	19	34	1.86
26639853--26639879	2	13.5	2	100	0	54	51	0	0	48	1.00
26641509--26641554	21	2.1	23	88	11	71	34	6	0	58	1.24
26641684--26641835	80	1.9	77	85	6	207	43	3	5	47	1.44
26643496--26643529	17	2.0	18	88	11	54	41	11	0	47	1.40
26648536--26648605	25	2.8	26	80	6	81	32	18	27	21	1.97
26648964--26649007	18	2.5	18	81	3	54	31	11	15	40	1.83
26649192--26649239	5	9.2	5	88	6	69	39	22	0	37	1.55
26650275--26650356	41	2.0	41	100	0	164	41	14	17	26	1.88
26653300--26653407	37	2.9	36	78	9	103	43	12	21	23	1.85
26655680--26655787	37	2.9	36	78	9	103	43	12	21	23	1.85
26659166--26659206	21	2.0	21	100	0	82	53	7	4	34	1.50
26662624--26662648	5	5.0	5	100	0	50	0	20	40	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26663403--26663428	12	2.2	12	100	0	52	15	30	23	30	1.95
26669109--26669168	29	2.1	29	90	0	93	48	25	11	15	1.78
26672712--26672768	26	2.1	27	87	9	82	64	3	31	0	1.10
26674363--26674823	113	4.1	113	89	3	660	27	23	21	27	1.99
26692396--26692474	36	2.2	36	95	4	142	17	20	31	30	1.96
26693311--26694099	44	17.7	44	74	5	503	30	20	17	32	1.95
26693457--26694099	89	7.2	87	74	6	293	30	20	16	32	1.95
26693564--26694096	89	5.9	88	76	5	314	30	21	15	32	1.94
26693750--26694094	133	2.6	132	80	3	361	32	23	14	29	1.95
26706386--26706434	23	2.1	24	96	3	91	46	4	22	26	1.69
26709118--26709173	29	1.9	29	96	0	103	48	23	12	16	1.80
26710742--26710778	3	12.3	3	100	0	74	32	0	0	67	0.91
26714381--26714675	147	2.0	148	94	2	522	47	12	17	22	1.81
26718505--26718584	33	2.4	34	74	19	87	53	5	3	37	1.41
26725307--26725367	9	6.4	10	76	16	51	31	4	1	62	1.26
26725307--26725396	19	4.8	19	76	10	71	31	4	1	63	1.21
26725349--26725428	30	2.8	29	78	16	85	30	3	0	66	1.09
26732806--26732984	58	3.1	57	87	4	234	27	18	6	47	1.72
26740304--26740350	25	1.9	24	82	4	58	42	8	10	38	1.70
26740335--26740367	14	2.4	14	100	0	66	24	15	12	48	1.78
26740968--26741005	18	2.1	19	85	5	51	34	2	5	57	1.35
26748500--26748686	57	3.3	57	100	0	374	43	13	20	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26748865--26748909	21	2.1	20	84	12	54	60	11	6	22	1.54
26751891--26751930	18	2.2	18	86	8	55	30	0	5	65	1.14
26756716--26756777	27	2.4	27	81	10	76	35	14	0	50	1.43
26756716--26756787	27	2.7	26	77	8	74	33	16	0	50	1.46
26758050--26758104	22	2.6	21	74	23	53	12	9	18	60	1.58
26761134--26761164	2	15.5	2	100	0	62	51	0	0	48	1.00
26762701--26763223	44	11.8	44	84	2	541	30	20	16	32	1.95
26765857--26765919	25	2.6	24	77	5	72	17	28	20	33	1.95
26766026--26766108	27	3.3	26	79	11	84	20	26	20	32	1.97
26766092--26766156	24	2.7	24	87	0	103	18	29	16	35	1.93
26766004--26766174	24	7.0	24	73	15	86	19	26	18	35	1.95
26768395--26768437	21	2.0	21	95	0	77	9	20	25	44	1.81
26772753--26772800	23	2.0	24	88	4	71	22	22	22	31	1.99
26772900--26772992	45	2.1	45	85	0	123	29	16	20	34	1.94
26780090--26780116	2	13.5	2	100	0	54	51	0	0	48	1.00
26780153--26780254	33	3.2	30	66	12	78	61	2	5	29	1.34
26780133--26780330	65	3.0	65	84	8	263	63	2	5	29	1.29
26780191--26780300	35	3.1	35	68	19	102	60	3	3	32	1.32
26780296--26780339	19	2.2	20	88	4	63	77	0	6	15	0.97
26780177--26780347	70	2.4	70	79	15	204	64	2	5	27	1.29
26787184--26787331	41	3.6	41	96	1	262	31	20	24	23	1.98
26787311--26787360	26	1.9	26	88	8	75	22	20	28	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26787373--26787483	43	2.6	43	76	11	122	25	14	24	36	1.93
26789975--26790120	42	3.5	42	80	6	170	35	26	17	21	1.95
26790097--26790149	26	2.0	26	96	0	97	24	30	22	22	1.99
26790123--26790273	41	3.7	41	90	0	248	23	24	19	32	1.98
26797782--26797821	18	2.2	18	86	8	55	60	2	0	37	1.11
26797792--26797842	17	2.8	19	82	11	54	60	0	0	39	0.97
26804134--26804169	18	2.1	18	89	5	56	55	5	8	30	1.52
26806912--26806948	17	2.2	17	90	4	58	24	5	13	56	1.58
26809135--26809220	42	2.0	42	84	4	109	44	12	5	37	1.67
26823783--26823817	18	1.9	18	88	0	52	42	17	20	20	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141