genome.fa.s1.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  103  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33399231--33399325	48	2.0	48	80	0	109	43	16	24	15	1.87
33400650--33401135	44	11.0	44	64	13	194	24	22	27	24	2.00
33400592--33401257	88	7.6	88	89	1	987	26	22	27	24	2.00
33402615--33402662	21	2.2	22	85	10	64	10	10	0	79	0.95
33405954--33405991	19	2.0	19	89	0	58	36	28	7	26	1.84
33408168--33408218	24	2.1	24	88	0	75	25	23	5	45	1.75
33408224--33408381	33	4.7	33	66	12	88	29	22	14	33	1.94
33408212--33408451	101	2.4	101	88	0	354	30	22	14	32	1.94
33410353--33410402	11	4.4	11	78	9	55	64	4	0	32	1.12
33413249--33413295	5	9.4	5	82	17	62	40	0	17	42	1.49
33416300--33416336	17	2.1	18	90	5	58	78	0	18	2	0.87
33422599--33422654	25	2.2	26	79	17	73	62	0	1	35	1.06
33424693--33424731	20	2.0	20	85	5	53	51	5	2	41	1.38
33424712--33424777	26	2.4	29	75	12	68	53	4	3	39	1.37
33425520--33425566	12	3.9	12	78	10	51	36	2	17	44	1.60
33426499--33426557	30	1.9	31	86	3	84	45	3	20	30	1.67
33429964--33430296	50	6.6	49	77	9	244	26	19	29	24	1.98
33431778--33431825	23	2.1	23	92	0	78	47	22	4	25	1.69
33434104--33434806	44	15.4	43	68	14	274	32	18	21	28	1.96
33434193--33434806	89	6.7	88	69	14	278	31	18	21	28	1.97
33434520--33434700	94	1.9	95	80	4	213	35	14	20	28	1.93
33434516--33434803	45	6.3	45	70	13	187	34	16	19	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33436231--33436317	26	3.3	26	85	3	102	29	3	3	63	1.27
33436249--33436335	26	3.4	24	76	12	66	33	4	3	58	1.35
33436319--33436367	19	2.5	21	71	21	52	40	8	0	51	1.32
33436375--33436466	25	3.7	25	77	7	89	21	2	4	71	1.14
33438735--33438782	23	2.1	23	100	0	96	25	4	27	43	1.72
33439382--33439423	21	2.1	20	82	8	50	52	2	23	21	1.59
33439477--33439521	19	2.4	19	100	0	90	40	4	24	31	1.75
33440257--33440312	28	1.9	30	82	7	71	42	1	1	53	1.21
33441106--33441134	11	2.7	11	94	5	51	37	0	0	62	0.96
33449305--33449342	12	3.5	11	82	10	51	57	0	0	42	0.98
33449636--33449680	22	2.0	22	87	8	65	40	11	4	44	1.60
33451889--33451924	18	2.1	18	94	5	65	44	16	16	22	1.86
33461855--33461890	13	2.8	13	91	4	56	52	11	0	36	1.37
33471466--33471608	72	2.0	72	83	5	182	25	22	16	35	1.95
33473775--33473823	25	2.0	24	84	4	62	16	18	24	40	1.90
33475168--33475217	24	2.1	24	88	0	73	40	18	16	26	1.90
33475175--33475487	36	8.7	36	85	0	383	39	15	12	32	1.84
33475175--33475488	108	2.9	108	87	0	448	39	15	12	32	1.84
33475593--33475649	24	2.4	24	96	0	105	28	14	29	28	1.95
33488306--33488369	32	2.0	32	96	0	119	35	20	15	28	1.93
33492892--33492975	31	2.7	31	79	3	89	46	7	9	36	1.64
33508999--33509027	15	2.0	15	93	6	51	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33516094--33516296	29	6.9	29	78	7	148	37	14	25	22	1.92
33516102--33516350	30	8.4	30	76	7	195	36	13	25	23	1.92
33526725--33526821	25	3.9	25	77	8	90	35	25	17	21	1.95
33529398--33529541	25	5.8	25	77	0	126	18	29	18	33	1.95
33529571--33529619	25	2.0	25	91	0	80	26	28	14	30	1.95
33529470--33529638	25	6.8	25	74	8	76	20	28	18	32	1.96
33529578--33529658	25	3.2	25	73	13	69	23	25	19	30	1.98
33534225--33534265	22	1.9	21	85	5	55	51	4	4	39	1.45
33534578--33534644	34	2.0	34	88	2	100	40	7	1	50	1.39
33538440--33538472	6	5.5	6	100	0	66	15	33	33	18	1.92
33539553--33539649	47	2.1	47	98	0	185	44	7	12	36	1.70
33540516--33540588	29	2.6	28	77	12	76	75	0	16	8	1.03
33541438--33541491	26	2.1	26	100	0	108	31	18	18	31	1.95
33544005--33544656	326	2.0	326	89	0	1000	33	19	13	32	1.91
33548655--33548771	34	3.4	34	84	0	144	30	5	16	47	1.70
33553815--33553865	17	3.0	17	80	5	50	54	3	5	35	1.43
33559066--33559107	14	3.2	13	77	12	50	19	2	0	78	0.86
33559148--33559216	31	2.3	30	87	2	93	42	8	0	49	1.34
33559149--33559219	29	2.5	30	82	17	89	42	9	0	47	1.36
33561273--33561325	24	2.2	25	82	3	63	26	20	7	45	1.78
33564050--33564116	31	2.2	30	81	7	80	83	2	7	5	0.89
33564550--33564602	19	2.8	18	86	11	70	83	3	13	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33565612--33565698	44	2.0	44	81	0	102	26	18	28	26	1.98
33565769--33566178	45	9.1	45	88	3	585	27	17	25	29	1.97
33565771--33566178	90	4.5	90	92	1	658	27	17	25	29	1.97
33566296--33566635	50	6.8	49	71	6	164	33	21	19	25	1.97
33566304--33566634	100	3.3	100	86	0	430	33	21	19	25	1.97
33566769--33566876	44	2.4	45	90	1	164	25	22	27	24	2.00
33573793--33574083	21	14.0	21	69	6	153	16	20	15	47	1.83
33573795--33574064	84	3.2	84	82	2	335	16	20	15	48	1.81
33573802--33574064	42	6.3	42	81	4	280	16	19	15	48	1.81
33573784--33574064	126	2.2	126	82	3	352	16	20	14	48	1.81
33576320--33576389	35	2.0	35	91	0	113	32	25	7	34	1.83
33580884--33580954	35	2.0	35	86	0	97	30	22	9	36	1.87
33590106--33590142	16	2.2	17	86	13	51	78	18	0	2	0.87
33593858--33593981	38	3.3	38	88	0	176	34	31	20	13	1.91
33595719--33595753	18	1.9	18	94	0	61	34	8	40	17	1.80
33601541--33601590	24	2.1	23	82	10	57	56	2	2	40	1.22
33602457--33602504	19	2.7	17	78	15	53	62	0	2	35	1.07
33602455--33602499	19	2.3	20	81	11	58	60	0	2	37	1.09
33602485--33602574	37	2.4	38	84	3	110	58	1	3	36	1.22
33602511--33602593	37	2.2	37	80	0	94	50	4	4	39	1.45
33602710--33602755	19	2.4	19	82	7	58	32	2	2	63	1.19
33612673--33612735	20	3.1	20	72	22	60	55	1	1	41	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33612673--33612734	21	3.1	18	78	17	61	56	1	1	40	1.19
33619085--33619165	31	2.6	31	86	1	101	38	8	7	45	1.63
33621785--33621854	3	23.0	3	85	2	95	28	1	4	65	1.20
33623658--33623708	24	2.2	24	82	3	59	25	13	5	54	1.61
33623672--33623712	12	3.4	12	79	0	55	31	7	4	56	1.48
33628698--33628760	31	2.0	31	100	0	126	34	15	15	33	1.90
33634412--33634545	44	3.2	44	65	25	126	61	5	5	26	1.40
33634424--33634546	37	3.1	37	65	26	99	60	5	5	28	1.43
33634390--33634553	81	2.0	82	98	1	321	59	7	4	28	1.45
33634429--33634561	44	3.2	44	64	25	124	58	6	6	28	1.47
33634406--33634578	81	2.2	79	88	7	251	61	6	5	26	1.43
33636536--33636570	11	3.2	11	100	0	70	51	8	8	31	1.63
33636536--33636579	22	1.9	24	90	9	74	56	6	9	27	1.55
33643089--33643122	17	2.0	17	94	0	59	61	0	2	35	1.11
33643396--33643420	6	4.2	6	100	0	50	84	0	0	16	0.63
33643774--33643938	41	4.0	41	100	0	330	20	31	26	21	1.98
33656268--33656427	27	6.0	27	81	4	171	44	22	15	18	1.86
33656268--33656400	53	2.5	53	91	2	203	44	23	15	16	1.86
33656814--33656938	28	4.5	27	83	6	151	22	22	24	31	1.99
33658585--33658624	20	2.0	21	90	5	64	67	2	22	7	1.28
33658610--33658643	9	3.4	10	88	12	52	79	0	20	0	0.73
33658590--33658643	20	2.8	20	86	8	67	75	1	20	1	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33659644--33659672	13	2.2	13	100	0	58	34	17	27	20	1.95
33661797--33661835	20	1.9	20	84	5	51	51	2	15	30	1.57
33662332--33662500	86	2.0	86	98	0	329	42	26	2	28	1.68
33665561--33665649	30	3.0	29	78	4	106	32	15	17	33	1.92
33667410--33667923	256	2.0	256	95	0	929	25	24	18	31	1.98
33670707--33670735	14	2.1	14	100	0	58	65	6	0	27	1.18
33670769--33670817	22	2.2	22	92	0	80	2	14	46	36	1.56
33670769--33670818	12	4.3	12	77	10	59	2	14	48	36	1.55
33675546--33675986	27	16.4	26	83	4	452	43	21	16	18	1.88
33675546--33675986	81	5.5	80	85	2	517	43	21	16	18	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141