genome.fa.s1.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  29  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9647586--9647677	9	10.0	9	67	17	55	30	2	3	64	1.21
9649284--9649345	18	3.5	17	91	4	70	46	16	8	29	1.75
9649303--9649345	9	4.8	9	88	0	68	46	13	9	30	1.75
9649285--9649344	27	2.2	27	85	5	77	46	16	8	28	1.76
9649473--9649544	18	3.9	18	87	1	99	11	2	47	38	1.54
9652550--9652606	20	2.8	20	76	5	62	29	3	1	64	1.20
9652550--9652606	26	2.2	26	77	0	60	29	3	1	64	1.20
9656106--9656302	40	4.9	40	81	1	214	32	16	21	28	1.95
9656107--9656302	81	2.4	80	81	0	221	33	16	21	29	1.95
9660853--9660973	59	2.1	59	88	0	179	34	18	14	33	1.90
9663812--9663844	11	3.0	11	87	12	50	18	0	27	54	1.44
9663902--9663950	8	5.9	8	78	7	53	18	0	4	77	0.92
9663899--9663955	17	3.4	16	78	9	60	19	0	5	75	0.99
9663956--9664117	40	4.1	40	85	1	227	30	14	25	29	1.95
9664888--9664922	14	2.5	14	90	9	54	17	2	0	80	0.84
9665669--9665760	5	18.4	5	81	10	109	18	3	1	77	0.97
9669737--9669875	6	23.3	6	91	6	221	16	0	1	81	0.81
9669758--9669875	1	118.0	1	68	0	56	16	0	0	83	0.71
9672819--9672859	3	13.7	3	94	0	73	63	0	2	34	1.08
9677815--9677864	24	2.1	24	85	3	66	48	6	6	40	1.52
9677868--9677913	24	1.9	24	81	0	56	34	0	13	52	1.40
9678845--9678878	14	2.5	14	95	4	61	14	0	35	50	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9679329--9679391	28	2.2	29	82	2	83	19	3	20	57	1.54
9679531--9679579	21	2.2	23	85	7	66	18	4	22	55	1.60
9681794--9681894	47	2.1	47	90	0	157	52	10	3	32	1.55
9682968--9683018	24	2.2	25	86	10	72	19	0	5	74	1.02
9686991--9687055	30	2.1	31	91	2	105	55	12	6	26	1.60
9688389--9688762	124	3.0	123	93	2	617	30	15	22	32	1.95
9692195--9692396	23	8.9	22	76	13	189	26	0	25	47	1.52
9692292--9692413	45	2.7	44	86	7	174	27	0	25	47	1.52
9692224--9692407	44	4.1	45	81	9	198	27	0	26	46	1.53
9692442--9692489	25	1.9	25	95	0	87	41	12	0	45	1.42
9693776--9693813	20	1.9	20	84	10	51	55	7	2	34	1.43
9695505--9695916	164	2.5	161	85	5	526	29	14	12	43	1.82
9695870--9696018	74	2.0	74	93	1	253	27	17	14	40	1.89
9696112--9696352	84	2.9	84	85	3	297	31	10	12	46	1.75
9703852--9703926	37	2.0	37	100	0	150	32	20	5	42	1.74
9709714--9709766	18	3.1	18	75	20	60	28	1	0	69	0.99
9710613--9710668	22	2.5	22	76	2	58	32	1	7	58	1.35
9721048--9721078	4	7.8	4	100	0	62	77	0	0	22	0.77
9722748--9722795	25	2.0	25	91	4	80	6	4	41	47	1.48
9724220--9724264	6	7.2	6	87	7	63	80	2	2	15	0.92
9725771--9725884	44	2.6	45	82	2	149	26	28	14	30	1.95
9726090--9726219	45	2.9	43	73	15	120	26	26	17	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9737779--9737805	2	13.5	2	100	0	54	0	48	0	51	1.00
9757402--9757435	17	1.9	18	88	5	52	29	11	11	47	1.76
9761246--9761350	43	2.5	43	82	4	124	23	31	24	20	1.98
9764396--9764450	27	2.0	27	100	0	110	34	10	21	32	1.89
9766977--9767412	124	3.5	124	90	0	674	32	17	20	29	1.96
9770409--9770622	112	1.9	112	93	1	367	40	7	8	43	1.63
9770689--9770762	21	3.5	21	90	3	121	20	1	33	44	1.60
9771013--9771051	21	1.9	20	84	5	51	5	25	38	30	1.78
9771999--9772024	7	3.7	7	100	0	52	57	15	0	26	1.38
9773150--9773247	51	1.9	51	81	8	119	51	2	20	26	1.59
9773211--9773264	22	2.5	21	77	11	56	50	5	22	22	1.70
9773226--9773258	11	3.0	11	86	13	50	54	9	18	18	1.69
9773407--9773485	40	2.0	40	85	5	106	24	30	24	21	1.99
9780083--9780115	16	2.1	16	88	5	50	57	0	9	33	1.30
9785135--9785193	26	2.4	24	78	13	66	32	10	0	57	1.32
9785393--9785468	38	2.0	38	100	0	152	34	10	13	42	1.78
9785959--9786000	17	2.5	16	75	24	50	66	7	7	19	1.39
9790957--9790992	18	2.0	18	100	0	72	27	5	22	44	1.75
9794754--9794792	14	2.8	14	92	0	60	23	0	30	46	1.53
9802182--9802262	32	2.4	34	85	8	103	38	12	18	30	1.88
9807958--9808010	27	1.9	28	81	11	65	43	0	3	52	1.19
9809061--9809091	12	2.6	12	89	0	53	29	22	6	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9809915--9809965	24	2.1	24	88	0	75	39	5	7	47	1.57
9809925--9809971	24	2.0	24	91	0	76	40	6	8	44	1.60
9814160--9814211	24	2.2	24	89	0	77	36	3	9	50	1.54
9815849--9815879	7	4.4	7	95	0	53	29	35	32	3	1.73
9816971--9816999	4	7.5	4	92	7	51	24	0	0	75	0.80
9822736--9822784	19	2.5	19	83	3	53	46	0	28	24	1.53
9825745--9825778	16	2.1	16	88	0	50	23	0	17	58	1.38
9828559--9828715	42	3.6	44	74	12	130	28	26	19	25	1.98
9834311--9834382	28	2.6	28	86	0	99	30	9	26	33	1.89
9839025--9839135	30	3.6	31	72	9	102	19	14	27	38	1.91
9840074--9840113	19	2.1	20	86	9	57	57	2	35	5	1.34
9844211--9844240	11	2.7	11	94	0	51	56	0	23	20	1.42
9845113--9845271	38	4.2	38	82	4	169	32	28	19	18	1.96
9847225--9847276	27	1.9	27	92	0	86	30	26	7	34	1.85
9847224--9847283	27	2.2	27	84	0	84	30	28	10	31	1.89
9847268--9847512	27	9.1	27	79	7	203	22	22	11	43	1.85
9847268--9847512	54	4.6	53	78	8	237	22	22	11	43	1.85
9849037--9849135	25	4.0	25	82	8	105	30	15	20	34	1.93
9849113--9849226	25	4.5	25	76	7	81	30	18	17	33	1.94
9850934--9850958	10	2.5	10	100	0	50	44	0	0	56	0.99
9857511--9857549	15	2.6	15	83	0	51	66	12	2	17	1.35
9861448--9861473	13	2.0	13	100	0	52	53	7	0	38	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9863878--9863933	3	18.7	3	96	0	103	32	0	35	32	1.58
9864483--9864605	42	2.9	42	92	0	201	47	17	4	30	1.66
9866296--9866331	3	12.3	3	94	5	65	69	0	0	30	0.89
9866677--9866714	18	2.1	19	85	5	51	47	2	15	34	1.60
9867333--9867409	40	1.9	40	81	0	91	31	20	19	28	1.97
9873818--9873949	49	2.7	50	77	12	130	18	26	18	35	1.95
9873891--9873951	25	2.5	24	78	7	68	16	27	18	37	1.92
9877555--9877620	31	2.2	30	86	5	89	43	13	9	33	1.76
9887041--9887079	15	2.6	15	95	0	69	23	0	7	69	1.14
9890464--9890496	17	1.9	17	93	0	57	18	36	3	42	1.66
9894197--9894244	23	2.1	23	85	11	64	29	0	22	47	1.51
9899372--9899412	21	2.0	20	86	9	57	31	14	0	53	1.41
9902973--9903060	21	4.2	21	89	0	131	39	18	26	15	1.90
9902962--9903060	42	2.4	42	86	3	139	40	18	26	15	1.89
9903230--9903272	17	2.4	18	80	11	52	51	11	0	37	1.39
9903759--9903805	22	2.2	21	84	3	58	53	10	0	36	1.36
9909203--9909260	30	1.9	31	85	3	82	48	5	0	46	1.24
9915273--9915701	213	2.0	214	99	0	851	41	10	7	40	1.69
9916143--9916213	36	2.0	36	94	0	124	47	12	11	28	1.76
9920951--9921021	36	2.0	36	94	0	124	47	12	11	28	1.76
9932085--9932113	13	2.2	13	100	0	58	24	10	37	27	1.88
9938357--9938407	26	2.0	26	88	7	79	49	23	5	21	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9940758--9940791	17	2.0	17	94	0	59	44	5	0	50	1.26
9942096--9942147	24	2.2	24	89	0	77	34	3	7	53	1.48
9943553--9943646	24	3.9	24	74	2	71	19	29	18	32	1.95
9943711--9943854	27	5.6	25	82	8	123	21	27	20	31	1.98
9943731--9943843	27	4.4	26	86	5	133	23	28	20	28	1.99
9943711--9943829	52	2.3	51	79	12	136	21	26	20	31	1.98
9943886--9943964	39	2.0	39	92	4	133	36	13	17	31	1.89
9947495--9948232	368	2.0	368	99	0	1458	33	9	22	35	1.86
9949334--9949366	12	2.8	12	95	0	57	42	3	39	15	1.62
9949590--9949631	4	10.5	4	94	0	75	2	0	23	73	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141