genome.fa.s1.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  42  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13164817--13164877	17	3.5	17	72	16	61	27	13	11	47	1.77
13164809--13164879	36	2.0	36	97	0	133	28	12	12	46	1.78
13164809--13164860	19	2.9	18	72	16	54	26	13	13	46	1.80
13170813--13170883	36	2.0	36	94	0	124	28	11	12	47	1.76
13171265--13171308	19	2.4	19	84	3	54	34	0	2	63	1.07
13173326--13173391	31	2.1	33	82	5	82	56	0	28	15	1.40
13180036--13180345	158	2.0	158	100	0	620	33	6	11	48	1.66
13180937--13181433	116	4.4	112	87	7	643	36	12	15	36	1.85
13181087--13181440	111	3.2	106	86	9	406	35	12	14	36	1.85
13181487--13181730	127	1.9	130	86	6	356	31	14	12	41	1.83
13181617--13181824	106	2.0	105	91	6	343	34	16	14	35	1.89
13188032--13188058	4	6.8	4	100	0	54	25	0	0	74	0.83
13188136--13188197	30	2.0	31	81	9	74	40	12	8	38	1.73
13189704--13189742	13	2.9	13	85	14	53	66	5	0	28	1.12
13189792--13189834	18	2.5	17	79	20	54	62	0	2	34	1.08
13190346--13190384	19	2.0	20	85	5	53	23	10	7	58	1.56
13190264--13190504	129	1.9	129	83	1	279	26	5	8	58	1.51
13192792--13192841	25	2.0	25	92	0	82	18	24	22	36	1.95
13195765--13196848	540	2.0	539	94	1	1906	29	22	14	34	1.93
13200326--13200371	21	2.0	24	84	12	62	47	8	4	39	1.54
13207969--13208001	13	2.3	15	90	10	52	24	18	18	39	1.92
13211616--13211797	98	1.9	95	90	5	294	38	1	19	40	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13211848--13212092	126	1.9	126	94	1	429	35	15	20	28	1.93
13226233--13226311	25	3.0	25	72	18	72	22	24	18	34	1.97
13226670--13227137	231	2.0	232	96	0	868	38	21	4	35	1.73
13235600--13236100	248	2.0	249	99	0	995	37	7	13	41	1.74
13238581--13238804	94	2.4	93	83	8	269	37	17	9	34	1.82
13262632--13262658	12	2.2	12	100	0	54	48	18	18	14	1.82
13265345--13265387	19	2.3	19	84	8	52	44	2	16	37	1.60
13270752--13270812	20	3.0	20	68	13	54	37	3	6	52	1.44
13282496--13282731	25	9.6	24	71	14	101	35	20	24	19	1.96
13282493--13282731	49	4.9	48	75	15	170	35	20	24	19	1.95
13282593--13282731	74	1.9	74	83	5	183	36	21	24	17	1.94
13282496--13282731	99	2.4	99	76	12	236	35	20	24	19	1.96
13286875--13286912	3	12.7	3	100	0	76	31	0	0	68	0.90
13292258--13292291	3	11.3	3	100	0	68	64	0	0	35	0.94
13293957--13294350	45	8.7	45	72	7	251	27	22	18	31	1.97
13293853--13294350	228	2.2	228	87	1	703	28	21	18	32	1.96
13294601--13294911	45	6.9	46	84	4	375	29	21	18	30	1.97
13296203--13296233	3	10.7	3	93	6	55	0	29	0	70	0.87
13300439--13300469	16	1.9	16	93	0	53	61	0	3	35	1.12
13301871--13301917	18	2.5	19	80	13	53	48	8	10	31	1.68
13303938--13303971	15	2.3	15	94	0	59	32	14	14	38	1.87
13307634--13307954	174	1.8	174	84	1	437	36	15	9	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13314761--13314813	20	2.7	20	71	11	54	39	22	5	32	1.78
13317132--13317240	36	3.0	36	89	0	164	30	17	11	40	1.86
13321027--13321188	87	1.9	86	87	2	236	27	14	22	35	1.93
13323405--13323477	28	2.6	27	82	8	85	23	10	6	58	1.55
13323460--13323497	20	1.9	20	94	0	67	21	10	0	68	1.19
13324117--13324141	13	1.9	13	100	0	50	24	16	12	48	1.79
13324735--13324814	29	2.8	29	82	3	90	42	18	27	11	1.84
13324789--13324833	17	2.6	18	89	6	67	37	20	28	13	1.90
13326373--13326483	50	2.2	50	83	3	134	38	20	18	21	1.93
13328644--13328681	19	2.1	19	90	9	62	39	0	2	57	1.12
13334188--13334334	58	2.5	58	79	5	136	33	12	22	31	1.92
13336450--13336651	105	2.0	102	81	8	239	41	13	17	27	1.87
13338067--13338108	21	2.0	21	90	0	66	19	19	23	38	1.93
13338112--13338159	2	24.0	2	100	0	96	50	0	50	0	1.00
13338429--13338472	3	15.0	3	95	4	81	68	0	31	0	0.90
13339061--13339110	15	3.1	15	74	20	55	44	28	8	20	1.79
13345164--13345211	2	24.0	2	100	0	96	50	0	50	0	1.00
13345481--13346010	3	177.0	3	99	0	1053	66	0	33	0	0.92
13346599--13346648	15	3.1	15	74	20	55	44	28	8	20	1.79
13362799--13362832	2	17.0	2	100	0	68	50	0	0	50	1.00
13365622--13365815	42	4.7	41	74	12	137	19	13	29	37	1.90
13365642--13365815	41	4.2	41	75	12	140	19	14	30	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13366404--13366532	14	9.1	14	68	17	54	22	0	41	35	1.54
13366426--13366472	22	2.2	22	92	3	78	21	0	38	40	1.53
13366478--13366532	15	3.6	15	81	18	69	20	0	49	30	1.49
13369332--13369672	43	8.0	43	92	1	551	18	17	34	29	1.94
13369844--13369899	28	2.0	28	92	0	94	46	12	12	28	1.78
13372043--13372096	8	6.9	8	76	16	51	53	0	1	44	1.11
13372036--13372087	22	2.4	22	86	0	68	50	0	1	48	1.12
13372042--13372121	39	2.1	39	81	13	94	52	2	1	43	1.22
13378476--13378527	19	2.6	20	87	9	79	30	0	0	69	0.89
13379598--13379860	130	2.0	131	99	0	519	39	3	12	44	1.60
13379642--13379849	61	3.3	62	67	15	181	39	4	12	43	1.61
13380735--13380812	19	4.0	19	77	11	77	37	8	1	52	1.41
13385532--13385608	35	2.2	35	95	0	136	32	24	16	25	1.96
13386432--13386487	24	2.4	24	82	8	71	3	26	7	62	1.38
13386515--13386549	6	5.8	6	87	12	54	0	20	0	80	0.72
13386569--13386636	24	2.8	24	81	0	82	45	8	36	8	1.67
13386572--13386612	21	2.0	21	90	0	64	48	4	36	9	1.58
13386575--13386636	27	2.3	27	88	0	88	46	6	37	9	1.62
13386719--13386800	6	13.8	6	79	7	51	1	28	1	69	1.03
13386816--13386902	12	7.2	12	74	16	63	5	40	1	52	1.33
13386775--13386900	48	2.5	49	83	10	146	5	38	1	53	1.34
13386782--13386894	48	2.4	48	86	0	154	6	38	1	53	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13386869--13386902	6	5.7	6	100	0	68	0	50	0	50	1.00
13386869--13386936	24	2.8	24	78	8	59	1	44	2	51	1.25
13400343--13400589	87	2.8	89	74	5	214	26	24	21	27	1.99
13401781--13401816	15	2.5	15	90	4	56	13	0	0	86	0.58
13416536--13416656	41	3.0	41	100	0	242	14	7	36	41	1.75
13422029--13422087	10	6.1	10	80	4	68	69	1	1	27	1.07
13422029--13422087	28	2.1	28	84	6	75	69	1	1	27	1.07
13425357--13425406	26	1.9	26	83	0	64	34	10	2	54	1.45
13426259--13426324	21	3.4	21	69	26	63	7	6	10	75	1.17
13426251--13426326	37	2.1	36	95	2	134	6	6	10	76	1.16
13426754--13426803	26	1.9	26	83	0	64	34	10	2	54	1.45
13427814--13427992	97	1.9	95	86	2	259	34	6	15	44	1.72
13431709--13431761	18	2.9	18	78	10	63	66	1	1	30	1.13
13431716--13431761	10	4.9	9	83	2	56	63	2	2	32	1.19
13435307--13435332	13	2.0	13	100	0	52	23	15	38	23	1.92
13443476--13443532	15	3.8	15	72	6	53	63	7	3	26	1.36
13462948--13463037	46	2.0	46	86	0	126	21	31	38	8	1.84
13481700--13481833	50	2.7	50	87	3	189	32	19	20	26	1.97
13481959--13483561	50	32.2	51	71	13	945	32	21	20	24	1.98
13481959--13483516	100	15.7	100	85	3	1995	32	22	20	24	1.98
13481959--13483516	198	7.8	197	90	1	2048	32	22	20	24	1.98
13489705--13489738	14	2.4	14	85	5	50	38	0	23	38	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13499911--13500108	17	10.6	17	72	23	132	39	1	11	47	1.48
13499911--13500117	57	3.6	57	100	0	414	40	1	10	47	1.47
13502251--13502687	84	5.1	84	91	4	705	28	18	20	32	1.96
13502251--13502687	172	2.6	171	94	2	747	28	18	20	32	1.96
13505057--13505217	82	2.0	82	92	0	268	21	22	21	33	1.97
13505170--13505259	40	2.3	38	81	9	117	17	25	18	37	1.93
13505183--13505276	40	2.3	40	87	1	125	21	29	17	31	1.96
13525821--13525927	53	2.0	53	100	0	214	29	7	20	42	1.80
13526647--13526699	22	2.5	22	82	11	65	20	30	1	47	1.61
13526649--13526699	11	4.5	11	76	9	50	21	31	1	45	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141