genome.fa.s1.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  22  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7115469--7115577	57	1.9	57	90	3	175	23	27	19	29	1.98
7117975--7118053	28	2.7	29	76	7	79	30	16	15	37	1.89
7118492--7118529	20	1.9	20	88	0	58	34	2	10	52	1.50
7122300--7122581	135	2.1	136	97	2	543	44	12	1	41	1.50
7123262--7123313	24	2.2	24	85	0	68	36	5	9	48	1.60
7127473--7127524	24	2.2	24	85	0	68	38	3	9	48	1.54
7130971--7131000	15	2.0	15	100	0	60	46	13	26	13	1.80
7141093--7141160	33	2.1	33	91	5	111	47	10	16	26	1.78
7141263--7141288	2	13.0	2	100	0	52	50	0	0	50	1.00
7142672--7142710	16	2.5	16	83	4	53	64	2	0	33	1.08
7142672--7142744	27	2.7	26	77	10	67	60	1	0	38	1.06
7146704--7146751	25	1.9	25	95	0	87	16	14	31	37	1.89
7150858--7150923	32	2.1	32	85	2	89	37	6	16	39	1.74
7157345--7157400	28	2.0	29	85	3	78	35	17	8	37	1.82
7158104--7158144	5	7.6	5	84	15	55	41	53	0	4	1.22
7158092--7158134	18	2.4	18	88	0	59	41	44	2	11	1.53
7158252--7158336	9	9.4	9	93	0	125	23	8	24	43	1.81
7164129--7164351	96	2.3	96	86	3	308	31	13	18	35	1.91
7164286--7164505	51	4.4	51	80	6	245	35	13	17	34	1.89
7164192--7164656	147	3.2	146	80	5	505	35	12	18	33	1.88
7164319--7164508	96	2.0	96	89	0	290	34	14	16	34	1.89
7164323--7164541	96	2.3	96	86	1	287	33	14	18	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7164890--7164914	13	1.9	13	100	0	50	40	36	8	16	1.77
7171463--7171808	69	5.1	64	78	11	275	29	7	2	59	1.40
7171390--7171808	134	3.2	133	80	12	386	29	7	2	59	1.40
7171518--7171808	70	4.3	67	81	8	338	28	7	3	60	1.38
7174659--7174725	30	2.2	31	92	5	111	43	5	20	29	1.76
7180203--7180347	41	3.5	40	81	15	138	27	25	20	26	1.99
7180201--7180362	41	4.0	39	76	20	136	29	24	20	25	1.99
7202607--7202645	15	2.4	16	87	8	53	35	0	0	64	0.94
7202606--7202736	24	5.0	25	68	17	70	42	0	0	56	1.04
7202602--7202782	81	2.2	81	100	0	362	44	0	1	54	1.07
7202688--7202726	15	2.4	16	87	8	53	35	0	0	64	0.94
7202634--7202781	30	5.2	28	71	21	105	44	0	1	54	1.08
7206318--7206576	136	1.9	135	82	7	319	31	13	17	37	1.89
7250732--7251066	41	7.8	41	73	8	222	28	20	22	28	1.99
7250732--7250942	84	2.5	84	90	3	341	27	21	23	27	1.99
7250815--7251061	131	1.9	130	87	2	361	28	21	22	27	1.99
7253848--7253887	21	1.9	21	84	0	53	20	2	12	65	1.38
7256181--7256241	3	20.3	3	100	0	122	65	0	0	34	0.93
7258529--7258572	14	2.9	15	81	18	56	68	0	2	29	1.02
7258531--7258573	16	2.8	15	80	13	52	72	0	2	25	0.97
7262488--7262545	21	2.8	20	80	17	64	46	6	8	37	1.61
7269173--7269256	43	2.0	43	92	2	143	42	15	4	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7276639--7276697	31	1.9	30	82	3	73	38	10	13	37	1.79
7277097--7277149	21	2.5	21	87	0	79	30	35	9	24	1.87
7278664--7278695	13	2.5	13	100	0	64	28	56	9	6	1.55
7282277--7282822	183	3.0	183	93	0	894	24	26	15	34	1.94
7288678--7288722	18	2.5	18	85	0	54	46	4	0	48	1.22
7292046--7292094	23	2.1	23	88	0	71	26	6	22	44	1.76
7293395--7293509	60	1.9	60	87	1	169	40	16	6	35	1.75
7296347--7296374	14	2.0	14	100	0	56	28	14	14	42	1.84
7296922--7296965	19	2.4	19	88	3	63	47	0	0	52	1.00
7302435--7302498	31	2.1	31	85	5	85	57	1	3	37	1.24
7304182--7304217	13	2.8	13	86	0	54	5	13	16	63	1.47
7333510--7333553	14	3.1	14	83	0	52	54	2	6	36	1.40
7335947--7335985	20	2.0	20	94	0	69	48	0	2	48	1.15
7336084--7336123	20	2.0	20	90	0	62	50	12	10	27	1.72
7336072--7336138	34	1.9	35	87	3	100	46	11	8	32	1.72
7337273--7337308	17	2.2	16	90	5	54	58	2	0	38	1.13
7339218--7339257	13	3.0	14	86	13	50	57	0	0	42	0.98
7339290--7339346	15	3.5	15	71	17	51	49	1	1	47	1.22
7342983--7343036	27	2.0	27	82	7	65	48	1	1	48	1.23
7349607--7349635	3	9.7	3	100	0	58	0	31	0	68	0.89
7353923--7353971	24	2.0	24	96	0	89	36	20	8	34	1.82
7362708--7362764	28	2.0	28	100	0	114	14	17	24	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7369614--7369783	89	1.9	88	82	7	209	47	11	15	25	1.80
7369796--7369841	23	2.0	24	91	4	76	56	17	6	19	1.62
7370720--7370765	19	2.4	20	85	7	60	21	2	2	73	1.04
7371025--7371086	32	1.9	32	84	12	83	59	0	8	32	1.26
7371058--7371099	19	2.3	19	87	4	59	57	0	7	35	1.26
7371173--7371209	19	1.9	19	89	10	58	29	0	0	70	0.88
7371358--7371424	20	3.3	19	74	17	64	35	1	0	62	1.04
7371834--7371889	21	2.8	19	84	10	76	32	12	19	35	1.89
7373680--7373761	40	2.1	39	95	2	146	35	31	1	31	1.66
7376376--7376415	21	1.9	21	89	0	62	60	0	0	40	0.97
7378926--7378969	16	2.8	16	78	0	52	52	0	6	40	1.28
7380875--7380901	2	13.5	2	100	0	54	48	0	0	51	1.00
7386397--7386436	14	2.9	14	84	0	53	32	2	17	47	1.61
7386419--7386458	20	2.0	20	90	0	62	32	10	12	45	1.75
7398486--7398529	20	2.2	20	84	8	54	68	6	0	25	1.14
7398568--7398631	9	7.2	9	87	3	94	23	10	23	42	1.86
7398568--7398631	26	2.4	27	94	2	112	23	10	23	42	1.86
7399273--7399380	11	9.8	11	69	15	62	27	8	18	45	1.78
7399258--7399380	22	5.6	22	89	0	174	26	8	18	45	1.79
7399864--7399963	30	3.2	30	81	15	139	41	4	18	37	1.69
7401073--7401166	11	9.6	10	74	12	72	60	1	2	36	1.16
7401082--7401133	17	2.9	18	80	8	61	67	0	1	30	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7401208--7401264	26	2.1	27	90	3	89	35	0	12	52	1.39
7401217--7401271	26	2.1	26	86	0	74	32	5	10	50	1.60
7404948--7404985	20	1.9	20	88	0	58	39	10	10	39	1.74
7405124--7405183	22	2.6	23	81	10	77	38	18	26	16	1.92
7405127--7405205	25	3.3	24	79	11	83	37	18	25	17	1.93
7405785--7405843	31	1.9	31	96	0	109	23	22	1	52	1.56
7405936--7405999	22	2.9	22	77	9	67	35	20	28	15	1.93
7407683--7407709	13	2.1	13	100	0	54	0	25	0	74	0.83
7413939--7414032	11	9.6	10	74	12	72	60	1	2	36	1.16
7413948--7413999	17	2.9	18	80	8	61	67	0	1	30	1.02
7414074--7414130	26	2.1	27	93	3	98	33	0	14	52	1.41
7414083--7414137	26	2.1	26	89	0	83	30	5	12	50	1.63
7414416--7414452	18	1.9	19	89	10	58	54	5	8	32	1.53
7414876--7414903	13	2.2	13	100	0	56	32	0	14	53	1.41
7415265--7415497	115	2.0	115	100	0	466	42	6	6	45	1.53
7415529--7415560	3	10.7	3	100	0	64	68	0	0	31	0.90
7419652--7419707	27	2.1	27	96	0	103	35	16	10	37	1.83
7430541--7430570	15	1.9	16	93	6	53	46	10	23	20	1.80
7440198--7440286	45	2.0	45	90	0	142	48	10	23	17	1.78
7440745--7440912	26	6.8	26	69	14	113	19	20	22	37	1.94
7442615--7442683	26	2.7	26	84	4	88	39	20	18	21	1.93
7442718--7442840	63	1.9	65	85	3	169	36	26	17	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7448137--7448192	16	3.5	16	78	9	69	30	17	3	48	1.65
7448314--7448370	27	2.1	28	80	9	64	45	0	1	52	1.11
7448736--7448775	20	2.0	20	90	0	62	50	12	10	27	1.72
7448724--7448790	34	1.9	35	87	3	100	46	11	8	32	1.72
7448759--7448798	14	2.9	14	84	0	53	42	17	7	32	1.77
7450599--7450632	17	2.1	17	88	5	52	29	11	5	52	1.61
7454211--7454256	16	2.9	16	93	0	83	36	6	34	21	1.80
7465351--7465421	24	3.1	22	75	16	72	63	5	11	19	1.47
7465351--7465448	47	2.1	47	80	3	108	65	4	12	18	1.41
7466960--7467011	22	2.4	22	80	6	61	19	15	9	55	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141