genome.fa.s1.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  41  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12949859--12949889	5	6.2	5	100	0	62	19	0	0	80	0.71
12956481--12956645	85	2.0	85	90	1	260	27	10	10	51	1.68
12957892--12957937	25	1.9	23	82	8	56	21	8	8	60	1.53
12958026--12958469	114	3.9	113	89	3	678	25	26	23	25	2.00
12959058--12959117	25	2.4	24	81	8	75	40	43	1	15	1.56
12960303--12960343	3	13.3	3	89	5	64	29	0	2	68	1.03
12960363--12960432	31	2.2	32	85	7	90	32	5	4	57	1.42
12967799--12967839	21	2.0	21	85	9	57	29	4	0	65	1.13
12967785--12968005	110	2.0	111	99	0	435	21	9	6	63	1.46
12967909--12967949	21	2.0	21	85	9	57	29	4	0	65	1.13
12969620--12969648	10	3.0	10	95	5	51	51	10	27	10	1.68
12984456--12984546	34	2.7	34	91	0	137	37	30	4	27	1.76
12987646--12987691	24	1.9	24	86	8	67	19	2	15	63	1.41
12987789--12987850	20	3.1	20	71	13	56	14	30	16	38	1.88
12997141--12997165	12	2.1	12	100	0	50	32	8	0	60	1.26
12997966--12997991	12	2.2	12	100	0	52	23	15	23	38	1.92
13003232--13003381	74	2.0	75	98	1	293	50	4	2	43	1.35
13003247--13003362	37	3.1	37	69	14	121	51	2	2	43	1.29
13006527--13006552	2	13.0	2	100	0	52	50	0	0	50	1.00
13007520--13007586	27	2.5	27	85	0	89	25	22	31	20	1.98
13011495--13011546	26	2.0	26	100	0	104	46	26	3	23	1.69
13017632--13017729	8	11.0	8	72	21	54	67	2	4	26	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13017661--13017709	17	3.1	15	77	13	53	73	2	2	22	1.04
13017643--13017729	42	2.0	45	88	6	135	68	1	4	25	1.15
13017624--13017729	9	11.7	9	76	18	80	66	1	3	27	1.19
13017646--13017729	20	4.1	20	72	13	64	70	1	3	25	1.11
13017968--13018027	9	6.1	10	78	20	56	60	0	5	35	1.19
13017968--13018037	17	3.6	20	79	14	67	62	0	4	32	1.14
13017982--13018035	16	3.1	16	80	19	63	68	0	1	29	1.00
13018292--13018338	18	2.7	17	80	9	51	25	6	2	65	1.27
13018348--13018436	31	2.9	31	81	6	110	48	11	3	37	1.56
13018356--13018436	29	2.7	31	82	3	103	46	12	3	37	1.59
13019683--13019707	13	1.9	13	100	0	50	20	16	8	56	1.65
13020205--13020272	29	2.3	29	85	5	84	36	20	14	27	1.92
13021599--13021628	9	3.3	9	100	0	60	46	10	23	20	1.80
13022063--13022100	14	2.7	14	100	0	76	31	36	5	26	1.79
13022668--13023253	111	5.2	112	88	5	808	24	25	20	28	1.99
13023885--13023919	16	2.2	16	89	0	52	48	5	0	45	1.26
13024019--13024046	2	14.0	2	100	0	56	50	0	0	50	1.00
13027634--13027668	13	2.8	12	83	8	52	40	0	0	60	0.97
13027629--13027671	19	2.3	19	84	4	61	44	0	0	55	0.99
13027848--13027925	20	3.9	19	80	12	70	60	2	1	35	1.19
13027848--13027925	21	3.9	20	82	9	72	60	2	1	35	1.19
13028094--13028129	18	2.1	17	89	5	54	44	11	16	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13028391--13028430	9	4.4	9	81	12	55	32	2	0	65	1.06
13028391--13028456	17	3.7	18	74	20	59	30	3	1	65	1.17
13029889--13029924	18	2.0	18	100	0	72	38	5	0	55	1.23
13035930--13035991	31	2.0	31	96	0	115	33	22	9	33	1.87
13039857--13040053	108	1.8	108	87	2	297	29	20	12	37	1.89
13042251--13042348	25	3.9	25	78	12	94	22	22	22	32	1.98
13042251--13042348	50	2.0	50	82	11	121	22	22	22	32	1.98
13042614--13042663	24	2.1	24	100	0	100	28	12	26	34	1.92
13042889--13042919	2	15.5	2	100	0	62	48	0	0	51	1.00
13044064--13044244	84	2.1	85	97	2	346	40	4	4	50	1.42
13053817--13054171	125	2.8	126	90	2	570	30	15	21	32	1.94
13057283--13057307	10	2.5	10	100	0	50	48	0	8	44	1.32
13057291--13057399	55	2.0	56	92	1	184	44	3	12	38	1.60
13057601--13057715	29	3.8	29	88	6	158	24	0	29	46	1.53
13057601--13057707	35	3.2	35	82	15	163	23	0	31	44	1.53
13057717--13057920	71	2.9	71	98	0	390	45	14	2	36	1.60
13057782--13057893	35	3.2	35	61	16	86	48	14	3	33	1.61
13058208--13058449	131	1.8	132	90	0	387	24	28	25	21	1.99
13059135--13059159	7	3.6	7	100	0	50	60	12	0	28	1.32
13060011--13060089	9	8.2	9	73	13	50	65	0	0	34	0.93
13060011--13060103	30	3.2	29	92	6	152	63	0	0	36	0.95
13060104--13060216	51	2.2	51	90	3	174	39	1	29	29	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13060191--13060238	22	2.2	22	100	0	96	41	0	33	25	1.55
13066694--13066746	21	2.4	21	78	9	52	49	0	1	49	1.12
13066702--13066742	20	2.0	21	85	4	57	46	0	0	53	1.00
13070951--13070988	14	2.7	14	95	0	67	34	21	7	36	1.82
13075474--13075500	6	4.5	6	100	0	54	66	0	0	33	0.92
13082313--13082357	21	2.2	21	88	4	65	35	2	8	53	1.45
13082237--13082447	9	22.6	9	64	19	60	34	3	4	57	1.36
13084150--13084217	30	2.3	30	87	2	93	29	7	2	60	1.39
13084175--13084218	14	3.0	14	80	6	52	34	2	2	61	1.21
13085668--13085822	57	2.7	57	97	0	292	25	23	34	15	1.94
13099276--13099347	4	17.8	4	75	15	51	19	6	1	72	1.15
13101842--13101987	30	4.9	30	82	8	174	33	23	3	39	1.72
13101842--13101978	58	2.3	60	84	3	188	32	23	3	40	1.72
13101943--13102008	30	2.2	30	83	0	78	33	30	6	30	1.82
13102331--13102382	3	17.0	3	84	11	70	65	1	32	0	1.04
13102332--13102391	18	3.1	18	74	21	50	70	1	28	0	0.97
13102495--13102529	14	2.4	14	85	4	52	85	8	0	5	0.73
13102496--13102522	14	1.9	14	100	0	54	88	11	0	0	0.50
13102589--13102648	24	2.5	25	75	17	65	35	45	20	0	1.51
13102676--13102752	25	3.3	23	80	18	79	80	0	15	3	0.85
13102674--13102754	34	2.4	35	85	8	105	77	0	18	3	0.91
13102678--13102742	26	2.5	25	80	14	78	80	0	16	3	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13103080--13103145	19	3.5	18	78	15	62	31	15	9	43	1.77
13103080--13103145	20	3.5	19	79	16	66	31	15	9	43	1.77
13103331--13103398	35	2.0	34	88	2	100	35	10	4	50	1.57
13103366--13103884	18	28.6	18	69	15	250	32	11	10	44	1.76
13103751--13103885	53	2.5	53	79	5	157	33	10	11	45	1.74
13103758--13103824	35	2.0	34	91	5	109	31	11	10	46	1.75
13113262--13113687	74	5.6	74	92	3	663	27	16	21	34	1.95
13113245--13113687	150	2.9	149	92	4	699	27	16	20	35	1.94
13113877--13114048	30	5.8	30	75	11	156	33	21	4	40	1.74
13113884--13114032	59	2.5	59	84	4	183	35	20	4	40	1.71
13114373--13114399	3	9.0	3	100	0	54	66	0	33	0	0.92
13114669--13114732	22	3.0	22	84	8	78	78	0	21	0	0.76
13114673--13114747	34	2.3	33	86	6	100	80	0	17	2	0.84
13114669--13114733	20	3.0	21	84	8	87	78	0	21	0	0.75
13114669--13114739	26	3.0	23	82	12	72	78	0	19	1	0.82
13114899--13114926	5	5.6	5	100	0	56	35	0	0	64	0.94
13115086--13115132	20	2.5	20	83	16	64	29	14	8	46	1.74
13115086--13115151	19	3.5	18	78	15	62	31	16	9	42	1.80
13115378--13115912	18	29.1	18	71	16	316	29	11	11	46	1.76
13115472--13115518	24	2.0	24	87	8	69	46	8	6	38	1.60
13115750--13115815	21	3.2	22	83	10	86	37	9	9	43	1.68
13115792--13115921	53	2.4	52	78	6	136	33	10	11	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13116804--13117013	107	2.0	107	80	7	239	20	28	20	30	1.98
13125808--13125837	15	2.0	15	100	0	60	26	0	0	73	0.84
13127714--13127801	46	1.9	46	95	0	158	51	19	6	22	1.70
13145781--13145838	25	2.3	26	93	3	100	32	13	12	41	1.82
13150635--13150704	3	23.3	3	72	5	52	58	8	2	30	1.42
13150623--13150704	24	3.4	24	75	9	62	59	9	2	28	1.42
13150623--13150692	12	5.8	12	74	0	50	57	11	2	28	1.48
13154325--13154377	8	6.6	8	85	8	54	47	0	1	50	1.12
13162777--13162873	49	2.0	49	93	0	167	61	6	7	24	1.45
13162898--13162931	16	2.2	15	89	5	50	61	0	8	29	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141