genome.fa.s1.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  120  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38227647--38227741	27	3.6	26	74	16	79	61	3	3	32	1.28
38230596--38230626	14	2.1	15	94	5	55	16	0	0	83	0.64
38231121--38231150	14	2.1	15	93	6	53	16	0	0	83	0.65
38230505--38231552	524	2.0	524	99	0	2080	34	7	13	44	1.72
38232879--38232916	12	3.2	12	100	0	76	34	7	15	42	1.76
38232908--38232957	23	2.2	22	85	7	64	40	6	16	38	1.73
38232908--38232967	23	2.7	23	79	7	61	38	5	15	41	1.68
38233272--38233312	3	13.7	3	84	0	55	31	4	2	60	1.30
38237135--38237176	16	2.6	17	74	11	52	52	9	4	33	1.55
38246873--38246949	37	2.1	37	100	0	154	53	5	0	41	1.23
38246880--38246938	17	3.3	17	68	13	55	50	3	0	45	1.18
38247169--38247233	20	3.3	20	76	18	66	26	9	24	40	1.85
38247354--38247625	134	2.0	135	98	1	528	33	10	12	43	1.76
38248573--38248610	14	2.7	14	84	8	51	57	2	0	39	1.12
38251322--38251374	22	2.4	22	84	6	63	39	11	1	47	1.50
38251331--38251386	22	2.5	23	82	5	69	42	8	1	46	1.45
38251870--38252208	109	3.1	109	90	2	515	32	15	15	36	1.89
38262128--38262191	27	2.3	28	94	2	112	62	3	3	31	1.26
38270862--38270887	3	8.7	3	100	0	52	34	0	34	30	1.58
38273319--38273390	24	3.0	24	93	0	117	37	4	9	48	1.55
38286871--38287012	73	1.9	73	91	2	232	35	18	17	28	1.94
38288033--38288073	20	2.0	21	86	13	59	63	0	9	26	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38288080--38288126	14	3.3	14	81	3	58	76	2	0	21	0.89
38288197--38288384	62	3.0	62	65	25	160	59	7	5	27	1.48
38290150--38290256	45	2.4	45	84	3	126	28	26	14	31	1.94
38290259--38290846	132	4.5	132	89	3	862	24	25	21	28	1.99
38290461--38290662	44	4.6	43	67	17	119	24	25	22	27	2.00
38290901--38291026	51	2.5	51	84	0	162	29	22	20	27	1.98
38291107--38291149	21	2.1	21	91	4	70	18	30	11	39	1.86
38291065--38291200	72	1.9	72	87	0	200	27	27	13	30	1.95
38291194--38291650	123	3.6	123	73	10	423	27	25	16	30	1.96
38291290--38291333	21	2.1	21	86	0	61	20	34	6	38	1.79
38291162--38291649	261	1.9	261	88	0	751	28	25	16	30	1.96
38291437--38291564	51	2.5	51	83	0	139	28	26	15	29	1.96
38292437--38292690	108	2.4	108	97	0	481	45	9	16	27	1.79
38295422--38295470	17	2.9	17	90	3	73	30	0	18	51	1.47
38295414--38295471	17	3.4	17	80	4	64	34	0	17	48	1.47
38296683--38296867	46	4.0	46	89	1	282	36	9	25	28	1.87
38301636--38301681	21	2.2	21	88	0	65	23	32	17	26	1.97
38306830--38306874	23	2.0	23	81	0	54	55	8	4	31	1.51
38310176--38310251	30	2.7	26	72	20	62	63	14	2	19	1.42
38311785--38311826	18	2.3	19	87	4	59	52	2	11	33	1.51
38312545--38312630	24	3.6	23	81	9	91	13	24	23	38	1.91
38312573--38312648	24	3.1	24	81	12	75	13	25	23	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38315106--38315160	25	2.2	25	83	6	67	38	3	0	58	1.16
38315089--38315408	100	3.2	100	99	0	631	43	1	0	54	1.11
38315206--38315375	25	6.7	26	69	12	86	40	2	0	57	1.12
38315924--38315965	22	1.9	22	85	0	57	23	19	28	28	1.98
38317868--38317894	13	2.1	13	100	0	54	40	22	22	14	1.90
38320750--38320778	15	1.9	15	100	0	58	75	0	0	24	0.80
38320864--38321023	86	1.8	87	85	7	227	44	13	8	33	1.75
38321658--38321853	90	2.2	89	85	6	252	33	9	19	37	1.84
38324126--38324238	41	2.8	41	91	0	181	19	21	28	30	1.97
38324510--38324557	14	3.4	14	80	5	51	18	0	35	45	1.50
38324524--38324557	15	2.3	15	90	5	52	20	0	38	41	1.53
38324576--38324634	7	7.9	7	75	14	55	20	0	47	32	1.50
38324576--38324624	15	3.2	15	85	8	55	18	0	46	34	1.49
38324574--38324623	23	2.1	24	92	3	84	16	0	48	36	1.46
38324582--38324632	23	2.2	23	82	6	59	21	0	45	33	1.52
38324807--38324842	15	2.5	15	95	4	65	25	0	41	33	1.55
38324845--38324944	44	2.3	43	80	10	105	25	1	39	35	1.63
38325675--38325896	43	5.2	42	80	7	225	22	15	31	30	1.94
38325675--38325892	86	2.6	85	84	7	264	22	15	32	30	1.95
38325936--38326031	31	3.4	31	71	28	113	34	25	20	19	1.96
38325936--38326053	53	2.2	53	100	0	236	35	25	21	17	1.95
38326017--38326060	22	2.0	22	90	0	70	45	27	18	9	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38326377--38326402	2	13.0	2	100	0	52	50	0	0	50	1.00
38337324--38338096	87	8.9	87	83	1	865	29	22	23	24	1.99
38337324--38338096	260	3.0	260	84	3	896	29	22	23	24	1.99
38337318--38338096	347	2.2	346	84	3	976	29	22	23	24	1.99
38338236--38338378	51	2.8	51	68	0	115	27	16	25	30	1.97
38338193--38338797	169	3.6	169	88	0	886	28	17	25	28	1.97
38338821--38339082	50	5.2	50	67	1	175	27	22	23	25	2.00
38338821--38339101	100	2.8	100	91	0	463	28	22	22	25	1.99
38339159--38339275	44	2.7	43	76	9	119	33	19	22	24	1.97
38346775--38346806	15	2.0	17	88	11	50	56	6	3	34	1.40
38346933--38346989	30	1.9	30	82	7	71	28	5	7	59	1.45
38352464--38352534	36	2.0	36	94	0	124	47	12	11	28	1.76
38358944--38358997	17	3.1	17	70	19	56	46	14	12	25	1.81
38358929--38358997	36	1.9	36	96	0	129	46	13	13	27	1.79
38358929--38358989	17	3.5	17	72	16	61	47	11	13	27	1.77
38368121--38368215	41	2.3	41	87	0	127	31	29	18	20	1.96
38370663--38370696	15	2.3	15	89	0	50	52	0	0	47	1.00
38371739--38371935	72	2.7	72	82	0	232	23	17	22	36	1.95
38371916--38371982	25	2.7	25	71	13	66	31	14	26	26	1.95
38371914--38371990	25	3.1	25	66	17	61	32	14	25	27	1.94
38372599--38372637	13	3.1	12	85	10	51	25	0	28	46	1.53
38375508--38375570	29	2.1	31	85	11	87	47	0	3	49	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38377755--38377785	14	2.2	14	94	0	53	35	3	12	48	1.58
38383301--38383345	18	2.5	19	82	7	58	62	6	0	31	1.21
38383977--38384022	19	2.3	20	88	3	67	78	2	8	10	1.05
38384851--38385264	132	3.1	132	85	4	539	29	22	18	29	1.98
38386711--38386798	44	2.0	46	88	4	135	15	22	18	43	1.88
38389896--38389941	19	2.4	19	85	7	58	47	10	19	21	1.80
38392805--38392850	19	2.3	20	88	3	67	78	2	8	10	1.05
38418442--38418504	32	2.0	32	100	0	126	31	12	9	46	1.74
38424735--38424781	24	2.0	24	86	0	67	29	4	17	48	1.65
38425260--38425284	10	2.5	10	100	0	50	40	8	0	52	1.31
38428205--38428249	23	2.0	23	100	0	90	51	8	17	22	1.73
38433372--38433438	29	2.3	29	79	5	73	31	26	16	25	1.96
38433507--38433597	38	2.4	37	78	8	103	37	13	19	29	1.90
38440152--38440186	17	2.1	17	100	0	70	48	11	5	34	1.63
38445130--38445161	7	4.6	7	96	0	55	9	0	3	87	0.64
38445678--38445717	19	2.1	19	85	0	53	57	5	15	22	1.57
38452617--38452648	16	2.0	16	100	0	64	43	6	31	18	1.75
38459575--38459649	28	2.7	28	97	2	143	60	0	4	36	1.16
38460986--38461043	11	5.2	11	77	4	53	70	10	6	12	1.33
38460986--38461061	34	2.2	34	85	0	98	72	10	6	10	1.28
38467444--38467477	18	1.9	18	88	5	52	35	2	5	55	1.39
38468744--38468777	18	1.9	18	88	5	52	35	2	5	55	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38469630--38469663	18	1.9	18	88	5	52	35	2	5	55	1.39
38472588--38472651	30	2.2	29	86	8	85	25	9	21	43	1.82
38474051--38474088	20	1.9	20	84	10	51	31	15	13	39	1.86
38476617--38476968	122	2.8	119	85	8	420	44	6	12	36	1.69
38481441--38481834	153	2.6	149	81	7	465	42	3	8	44	1.53
38481643--38481687	20	2.2	21	88	4	65	40	0	8	51	1.33
38481308--38482393	544	2.0	544	94	2	1914	37	7	11	43	1.70
38482188--38482232	20	2.2	21	88	4	65	40	0	8	51	1.33
38481990--38482444	153	3.0	152	84	7	525	42	3	9	43	1.56
38483000--38483034	10	3.5	10	84	0	52	17	2	2	77	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141