genome.fa.s1.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  50  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15981063--15981290	41	5.6	41	92	0	366	21	22	28	28	1.99
15986768--15986908	43	3.3	41	79	7	140	19	17	26	36	1.94
15986826--15986929	43	2.4	43	84	6	122	27	16	28	26	1.97
15986999--15987043	22	2.1	21	91	4	72	42	28	17	11	1.84
15993125--15993202	38	2.1	38	95	0	138	50	8	1	39	1.42
15993483--15993592	57	1.9	56	80	5	123	55	11	5	27	1.58
15994145--15994172	14	2.0	14	100	0	56	14	14	21	50	1.78
15994158--15994885	125	5.9	125	86	4	1035	28	16	21	32	1.95
15994158--15994887	248	2.9	248	99	0	1426	28	16	21	32	1.95
15997541--15997758	116	1.9	116	95	0	391	43	9	8	38	1.68
15997808--15998363	51	11.1	51	78	15	463	28	2	23	44	1.66
15997791--15998370	74	7.8	74	81	12	598	28	2	23	45	1.66
15998037--15998101	34	1.9	34	93	0	112	29	0	21	49	1.50
15998153--15998267	50	2.3	50	89	3	151	27	0	26	45	1.60
15997791--15998305	23	21.0	23	78	16	448	29	2	23	44	1.67
15998287--15998350	30	2.1	30	85	0	83	21	0	25	53	1.46
15998376--15998473	43	2.3	43	89	5	144	48	11	0	39	1.39
15998893--15998927	18	1.9	18	94	0	61	34	8	31	25	1.86
15999572--15999603	7	4.6	7	100	0	64	59	12	0	28	1.34
16001535--16001595	20	3.0	20	79	9	79	62	8	3	26	1.39
16002843--16002881	19	2.1	19	85	0	51	61	0	5	33	1.18
16004561--16004610	8	6.1	8	77	13	57	20	0	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16004563--16004623	26	2.3	27	91	8	99	24	0	1	73	0.92
16004563--16004633	26	2.7	26	82	8	65	22	0	5	71	1.06
16006146--16006506	43	8.5	43	88	0	530	26	26	17	29	1.97
16006835--16007006	88	2.0	88	89	0	263	11	28	19	40	1.87
16009528--16009558	6	5.2	6	100	0	62	48	16	0	35	1.46
16011085--16011350	41	6.5	41	87	3	347	37	27	18	16	1.92
16011530--16011813	126	2.3	125	91	0	451	33	18	21	27	1.96
16012677--16012719	18	2.4	18	88	0	59	44	9	27	18	1.80
16013374--16013406	7	4.7	7	96	0	57	54	18	0	27	1.44
16020414--16020449	18	2.0	18	100	0	72	44	16	5	33	1.71
16022233--16022258	10	2.6	10	100	0	52	84	0	0	15	0.62
16022232--16022264	10	3.0	11	86	13	50	78	0	3	18	0.87
16024655--16024696	13	3.2	13	87	12	68	28	0	2	69	1.01
16024655--16024696	12	3.3	12	76	23	50	28	0	2	69	1.01
16029572--16029632	30	2.0	30	93	0	104	9	31	34	24	1.88
16032812--16032855	24	1.9	24	86	9	65	40	4	34	20	1.73
16039356--16039383	12	2.3	12	100	0	56	25	25	0	50	1.50
16041615--16041643	15	1.9	15	100	0	58	62	6	3	27	1.37
16041613--16041658	15	2.7	17	77	19	51	60	6	6	26	1.46
16044439--16044508	21	3.2	21	66	15	61	47	11	5	35	1.64
16044407--16044539	44	3.0	44	100	0	266	47	11	4	36	1.60
16045998--16046029	14	2.3	14	94	0	55	18	9	12	59	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16055297--16055345	24	2.0	24	100	0	98	26	12	4	57	1.53
16055300--16055351	24	2.2	24	92	0	86	25	15	3	55	1.57
16066506--16066535	12	2.5	12	94	0	51	20	26	30	23	1.98
16069853--16069956	41	2.5	41	85	0	127	19	25	25	29	1.98
16076901--16076962	6	10.2	6	75	20	58	79	1	14	4	0.98
16076901--16076940	17	2.3	17	87	12	55	82	0	15	2	0.77
16100466--16100497	16	2.0	16	93	0	55	6	21	25	46	1.74
16114504--16114676	50	3.4	51	82	2	206	26	21	30	21	1.98
16131658--16131693	18	2.0	18	94	0	63	44	13	5	36	1.68
16137595--16137719	66	1.9	67	89	1	198	33	13	11	41	1.80
16138427--16138466	20	2.0	20	95	0	71	27	10	7	55	1.60
16150854--16150902	19	2.5	20	80	6	57	42	12	18	26	1.85
16152480--16152537	21	2.8	22	80	15	61	62	5	12	20	1.49
16152904--16152960	17	3.4	17	68	18	55	35	8	0	56	1.31
16152906--16152988	34	2.4	34	96	4	150	36	9	0	54	1.33
16153317--16153374	21	2.8	21	80	15	59	20	12	5	62	1.49
16153416--16153725	109	2.9	109	84	3	385	30	16	19	33	1.94
16157416--16157601	66	2.7	68	81	8	243	27	20	25	25	1.99
16173273--16173366	41	2.3	38	71	18	91	42	18	2	37	1.62
16175217--16175350	68	1.9	71	86	6	193	54	6	2	35	1.42
16175255--16175352	17	5.8	17	70	22	73	58	4	2	35	1.29
16178096--16178123	12	2.3	12	100	0	56	53	7	7	32	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16182736--16182760	13	1.9	13	100	0	50	44	24	8	24	1.80
16195731--16195769	17	2.1	20	86	13	57	51	5	12	30	1.62
16216131--16216304	29	6.1	29	80	9	151	35	12	25	27	1.92
16216143--16216364	85	2.6	86	83	8	256	36	12	27	23	1.91
16216176--16216406	29	8.0	29	76	8	175	37	13	26	22	1.91
16216170--16216366	58	3.4	57	74	6	200	36	13	27	23	1.92
16216143--16216389	85	2.9	85	82	8	234	36	12	27	24	1.91
16219319--16219352	17	2.0	17	88	0	50	29	29	23	17	1.97
16228830--16228863	17	2.1	17	94	5	61	47	11	5	35	1.65
16240100--16240154	26	2.1	26	100	0	110	41	10	10	36	1.75
16242854--16243128	137	2.0	138	87	3	394	32	26	21	20	1.97
16246497--16246664	87	1.9	87	85	2	230	33	16	22	27	1.95
16247043--16247237	96	2.0	97	98	1	383	51	5	7	36	1.52
16247081--16247228	46	3.1	46	62	24	108	53	5	8	33	1.53
16249517--16249565	24	2.0	25	84	8	64	40	14	6	38	1.71
16250133--16250171	14	2.8	14	84	0	51	33	2	7	56	1.41
16259429--16259453	7	3.6	7	100	0	50	28	0	12	60	1.32
16260104--16260143	18	2.2	18	95	0	71	22	30	7	40	1.81
16260402--16260441	21	1.9	21	84	0	53	37	32	20	10	1.85
16260564--16260607	23	1.9	23	100	0	88	40	0	15	43	1.47
16260563--16260618	23	2.4	23	85	5	78	41	0	14	44	1.45
16260652--16261137	23	21.6	23	78	13	294	47	26	0	25	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16260648--16261120	158	3.0	154	82	8	546	47	27	0	25	1.52
16260694--16261137	181	2.5	179	87	5	623	47	27	0	25	1.52
16260648--16261137	45	10.9	46	78	12	429	47	26	0	25	1.52
16264084--16264129	23	2.0	23	100	0	92	56	4	13	26	1.55
16264434--16264487	24	2.2	24	80	0	63	51	0	0	48	1.00
16264800--16264849	7	7.6	7	76	10	52	32	0	0	68	0.90
16264784--16264841	21	2.9	20	75	12	57	36	0	0	63	0.94
16264785--16264852	20	3.3	20	81	6	75	36	0	0	63	0.95
16265169--16265228	29	2.1	29	81	6	68	43	11	10	35	1.75
16265845--16265896	24	2.2	23	80	10	61	48	5	1	44	1.38
16267100--16267143	23	1.9	23	90	9	72	18	0	25	56	1.41
16279300--16279339	20	2.0	21	90	5	64	72	0	22	5	1.04
16279348--16279386	17	2.2	18	86	4	53	64	2	25	7	1.33
16280781--16280817	16	2.3	16	100	0	74	16	5	18	59	1.55
16292213--16292244	16	2.0	16	100	0	64	50	12	6	31	1.65
16298551--16298732	45	4.1	44	83	5	206	32	28	18	21	1.96
16300651--16300731	41	2.0	41	100	0	162	41	35	7	14	1.74
16301180--16301221	19	2.3	19	84	12	52	4	14	2	78	1.01
16302494--16302802	108	2.8	108	89	4	453	29	17	20	32	1.95
16313440--16313488	22	2.2	22	92	0	80	46	10	2	40	1.49
16316883--16316919	19	1.9	19	88	0	56	16	5	5	72	1.21
16320156--16320187	16	2.0	16	93	0	55	25	15	0	59	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16320176--16320247	37	1.9	38	88	2	110	30	22	2	44	1.67
16320439--16320631	101	1.9	102	89	1	298	28	26	16	29	1.97
16320439--16320631	51	3.8	50	84	5	237	28	26	16	29	1.97
16326176--16326208	16	2.0	17	88	5	50	39	12	3	45	1.57
16327697--16327964	41	6.6	41	89	3	382	33	23	17	25	1.97
16327696--16327957	122	2.2	121	88	2	400	33	23	17	25	1.97
16327717--16327964	81	3.0	81	91	3	383	34	22	17	25	1.96
16331025--16331056	15	2.1	15	94	0	55	15	6	9	68	1.36
16337883--16337937	18	2.9	19	67	20	51	43	1	9	45	1.46
16342564--16342609	20	2.2	22	85	14	62	32	4	4	58	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141