genome.fa.s1.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  70  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22781427--22781511	24	3.6	24	77	3	109	41	14	18	25	1.88
22781409--22781527	47	2.5	47	95	0	211	42	12	19	26	1.87
22782367--22782496	43	3.0	42	80	16	167	30	29	17	23	1.97
22787656--22787687	16	2.0	16	93	0	55	25	15	0	59	1.36
22787918--22788037	46	2.5	48	81	11	131	28	28	19	24	1.98
22790564--22790620	26	2.3	25	85	8	73	45	0	3	50	1.18
22811401--22811446	23	2.0	23	83	8	58	6	13	2	78	1.04
22813049--22813104	29	1.9	29	100	0	112	32	21	25	21	1.98
22818409--22818445	15	2.3	17	86	9	51	37	0	10	51	1.37
22818332--22818448	38	3.0	36	75	16	101	38	3	8	49	1.50
22835108--22835142	14	2.5	14	90	0	52	34	22	5	37	1.78
22835780--22835831	24	2.2	24	85	0	68	25	38	34	1	1.67
22836369--22836647	62	4.7	61	83	11	348	48	10	5	35	1.61
22836412--22836647	61	4.3	51	85	9	203	48	9	5	36	1.59
22836381--22836589	112	1.9	112	92	0	355	46	9	6	37	1.63
22836480--22836647	61	2.7	62	92	1	277	49	9	5	35	1.58
22839323--22839360	18	2.1	19	95	5	69	0	26	2	71	1.00
22840042--22840085	20	2.2	20	88	4	63	6	22	6	63	1.43
22845047--22845109	30	2.1	29	85	8	83	44	4	1	49	1.33
22847160--22847263	49	2.1	49	92	0	172	32	8	9	49	1.66
22849206--22849243	16	2.4	16	90	0	58	26	31	2	39	1.70
22857626--22857815	65	2.9	64	88	1	281	36	21	8	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22864036--22864066	16	1.9	16	93	0	53	41	9	12	35	1.76
22864836--22864957	63	1.9	63	88	1	181	27	5	33	32	1.81
22864836--22864974	64	2.2	63	84	1	170	29	5	33	31	1.81
22864836--22864991	64	2.5	64	81	9	160	29	6	33	30	1.82
22871262--22871354	7	13.3	7	76	12	66	47	0	20	32	1.51
22871251--22871354	35	3.0	33	76	9	91	46	0	22	31	1.52
22874283--22874433	30	5.0	30	99	0	293	23	12	16	47	1.80
22886349--22886534	54	3.4	55	81	8	175	6	49	4	38	1.51
22886399--22886475	24	3.0	24	67	20	64	2	51	2	42	1.29
22888013--22888046	15	2.3	15	89	0	50	8	8	47	35	1.66
22889063--22889156	48	2.0	48	89	0	143	46	14	10	27	1.78
22891180--22891213	7	4.9	7	96	0	59	70	26	0	2	1.01
22898785--22898892	54	2.0	54	100	0	216	29	18	12	38	1.88
22899310--22899336	2	13.5	2	100	0	54	51	0	0	48	1.00
22899329--22899534	67	3.1	66	81	6	265	45	15	6	32	1.72
22901878--22901916	18	2.2	18	85	0	51	51	0	41	7	1.31
22905909--22905963	20	2.8	18	83	10	56	20	5	0	74	1.01
22910275--22910299	12	2.1	12	100	0	50	52	8	16	24	1.70
22914177--22914400	44	5.1	44	66	6	130	25	25	26	22	2.00
22914118--22914845	88	8.3	88	82	2	750	27	24	25	23	2.00
22914121--22914845	176	4.1	176	84	3	861	27	24	25	23	2.00
22914616--22914758	44	3.2	44	69	11	139	25	25	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22914121--22914838	263	2.7	265	82	3	840	27	24	25	23	2.00
22914824--22915445	44	14.1	44	73	10	441	29	15	25	29	1.96
22914832--22915445	132	4.7	131	91	1	953	28	15	25	29	1.96
22914832--22915445	262	2.3	264	91	0	989	28	15	25	29	1.96
22920599--22920694	44	2.2	44	90	1	147	39	10	22	27	1.87
22920712--22921302	50	11.8	50	91	0	941	25	22	31	20	1.98
22920712--22921253	100	5.4	100	99	0	1050	24	23	32	19	1.98
22921829--22921960	44	3.0	44	100	0	264	29	15	9	45	1.77
22928250--22928281	9	3.6	9	91	0	55	31	3	21	43	1.68
22928317--22928360	9	4.9	9	94	0	79	36	0	20	43	1.52
22928311--22928360	18	2.8	18	93	0	82	36	2	18	44	1.61
22928369--22928395	13	2.1	13	100	0	54	37	11	0	51	1.37
22931113--22931156	22	2.0	22	82	8	54	59	11	2	27	1.44
22932752--22932901	50	3.0	50	93	0	255	20	31	20	27	1.98
22937924--22937956	13	2.8	12	86	13	50	27	15	18	39	1.90
22938522--22938636	56	2.1	56	93	3	196	26	19	27	26	1.99
22939903--22939989	41	2.1	41	80	4	95	18	24	12	44	1.84
22946317--22946426	41	2.7	41	89	0	166	31	20	25	21	1.98
22946400--22946452	26	2.0	26	88	0	79	18	22	33	24	1.97
22954703--22954766	27	2.4	27	89	0	92	34	17	14	34	1.89
22955213--22955239	5	5.4	5	100	0	54	37	0	0	62	0.95
22956508--22956555	20	2.4	19	82	6	51	33	6	16	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22960179--22960727	272	2.0	271	95	1	992	32	17	13	36	1.89
22979175--22979214	20	2.0	20	85	9	55	22	27	0	50	1.50
22989630--22989834	91	2.2	90	82	8	234	38	19	9	32	1.84
22989847--22989898	25	2.0	26	85	3	70	67	1	1	28	1.12
22990059--22990111	27	2.0	27	84	0	70	30	0	3	66	1.10
22990162--22990383	91	2.4	91	84	8	290	36	8	21	34	1.83
22990168--22990392	93	2.5	90	82	7	276	35	8	20	35	1.83
22995632--22995662	13	2.4	13	100	0	62	25	32	19	22	1.97
22996425--22996537	44	2.5	45	85	1	156	24	21	14	39	1.90
22998725--22998993	141	1.9	141	78	9	296	44	14	11	29	1.81
23003011--23003174	46	3.6	46	84	3	197	30	23	18	27	1.98
23005082--23005133	25	2.1	25	96	0	95	36	0	44	19	1.51
23012238--23012295	9	6.4	9	80	7	73	24	10	24	41	1.86
23012348--23012384	9	4.1	9	92	0	65	45	13	10	29	1.77
23015565--23015664	19	5.3	19	71	9	96	65	9	9	17	1.46
23015548--23015665	38	3.1	38	100	0	236	63	11	10	15	1.52
23022583--23022617	17	2.1	17	94	0	61	45	17	5	31	1.71
23022587--23022625	17	2.3	17	86	0	51	43	15	2	38	1.60
23030546--23030578	2	16.5	2	93	0	57	51	3	0	45	1.16
23035336--23035398	28	2.3	27	83	10	74	68	3	0	28	1.05
23035339--23035398	27	2.2	27	82	14	70	70	3	0	26	1.03
23037363--23037412	24	2.1	23	81	3	55	36	0	4	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23038700--23038729	15	1.9	16	93	6	53	13	0	13	73	1.10
23041676--23041708	3	11.0	3	100	0	66	33	33	0	33	1.58
23042313--23042346	15	2.2	16	94	5	61	35	0	0	64	0.94
23042903--23042953	25	2.0	25	81	7	59	45	1	1	50	1.24
23057995--23058067	25	2.9	25	81	0	92	34	16	17	31	1.93
23061179--23061276	52	1.9	51	91	2	160	31	14	10	43	1.78
23061178--23061278	26	3.9	25	84	6	130	33	13	9	42	1.78
23070695--23070723	14	2.1	14	100	0	58	20	0	6	72	1.07
23072378--23072476	43	2.3	43	92	0	171	22	17	26	34	1.95
23073498--23073584	44	2.0	43	93	2	147	32	17	13	36	1.89
23079509--23079534	5	5.2	5	100	0	52	38	19	19	23	1.93
23080244--23080274	9	3.4	9	90	0	53	38	22	12	25	1.90
23082936--23083001	30	2.2	30	83	2	80	31	9	25	33	1.87
23083400--23083469	16	4.4	16	88	0	86	31	0	35	32	1.58
23083410--23083471	32	1.9	32	90	0	97	33	0	37	29	1.58
23083448--23083557	45	2.6	43	80	9	129	33	5	29	31	1.80
23083751--23083790	20	2.0	21	85	5	55	60	5	0	35	1.19
23083892--23083955	28	2.4	28	86	5	87	56	0	0	43	0.99
23083702--23084138	120	3.7	120	93	3	735	51	4	1	42	1.31
23083701--23084121	59	7.1	59	68	21	258	51	4	1	42	1.31
23092290--23092319	15	2.0	15	93	0	51	20	36	0	43	1.52
23093001--23093113	50	2.3	51	84	4	142	30	23	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23093017--23093113	25	3.9	25	77	8	99	30	23	23	21	1.99
23098274--23098310	13	2.8	13	100	0	74	56	5	8	29	1.51
23099953--23100132	40	4.6	40	80	4	186	22	25	16	35	1.95
23100862--23100965	54	1.9	54	80	7	122	25	25	29	19	1.98
23106220--23106254	16	2.2	16	90	5	54	22	37	8	31	1.85
23109469--23109496	2	14.0	2	100	0	56	50	0	50	0	1.00
23111109--23111147	6	6.3	6	88	5	60	15	20	0	64	1.30
23111120--23111259	57	2.5	56	78	14	146	25	20	5	49	1.69
23122986--23123068	33	2.5	34	88	3	116	43	6	4	45	1.49
23132118--23132151	12	2.9	11	87	12	50	88	0	8	2	0.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141