genome.fa.s1.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  138  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44896069--44896095	13	2.1	13	100	0	54	25	22	14	37	1.93
44896815--44896867	16	3.3	16	97	0	97	22	35	3	37	1.72
44909272--44909315	23	2.0	23	86	13	65	50	13	11	25	1.75
44910327--44910386	29	2.1	28	81	9	68	26	18	3	51	1.61
44911362--44911399	20	1.9	20	88	0	58	39	23	23	13	1.90
44912146--44912187	19	2.2	20	83	12	52	42	21	2	33	1.66
44914924--44915267	171	2.0	171	97	0	643	34	18	15	31	1.92
44917259--44917311	14	3.8	14	77	7	54	33	30	1	33	1.69
44917958--44918011	24	2.2	24	83	6	65	59	11	7	22	1.56
44921568--44921642	26	2.9	26	91	0	114	18	22	22	36	1.95
44921745--44921836	28	2.9	33	76	15	104	22	22	25	29	1.99
44921781--44921849	33	2.1	34	83	2	86	23	21	24	30	1.99
44930216--44930322	26	4.1	26	77	0	106	22	22	19	35	1.96
44944043--44944101	31	1.9	31	93	6	102	30	28	0	40	1.57
44961124--44961303	94	1.9	94	90	0	288	33	16	17	32	1.92
44969833--44969871	7	5.6	7	81	0	51	15	0	35	48	1.45
44970038--44970222	7	26.6	7	72	3	131	18	1	32	47	1.59
44970071--44970189	62	1.9	62	86	3	168	18	2	30	48	1.61
44971257--44971303	18	2.6	18	93	6	78	23	38	12	25	1.90
44971448--44971486	20	2.0	20	90	10	62	15	23	5	56	1.59
44975484--44975807	161	2.0	159	94	1	567	32	5	32	29	1.81
44977385--44977449	34	1.9	34	84	6	87	35	18	18	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44977462--44977551	43	2.1	43	83	4	110	30	18	21	30	1.97
44982394--44982418	1	25.0	1	100	0	50	100	0	0	0	0.00
44986442--44986697	56	4.8	51	88	6	309	22	29	23	24	1.99
44990356--44990390	17	2.1	17	94	0	61	37	22	17	22	1.94
44994065--44994316	50	4.8	53	82	8	300	22	28	22	26	1.99
45007406--45007581	33	5.3	33	72	6	142	30	18	26	25	1.98
45007367--45007611	133	1.8	133	85	3	350	31	17	25	25	1.97
45022926--45023048	57	2.1	57	85	4	167	47	4	17	29	1.68
45027346--45027383	20	2.0	19	85	10	51	34	10	15	39	1.82
45046779--45046832	27	2.0	27	85	0	72	70	0	7	22	1.12
45046797--45046853	17	3.3	17	82	2	60	75	1	3	19	1.04
45049206--45049269	32	1.9	34	81	6	78	37	4	10	46	1.60
45053711--45053758	25	1.9	25	86	0	69	35	8	4	52	1.51
45054210--45054454	122	2.0	123	99	0	483	41	7	6	44	1.58
45057434--45057498	26	2.7	24	78	17	71	61	1	15	21	1.42
45058264--45058312	19	2.5	21	71	15	52	26	0	10	63	1.26
45058330--45058481	70	2.2	70	96	2	279	30	3	17	48	1.65
45060986--45061016	2	15.0	2	93	6	53	48	3	0	48	1.17
45067328--45067391	26	2.5	26	87	5	85	21	26	23	28	1.99
45078159--45078197	20	2.0	20	90	10	62	15	23	5	56	1.59
45079936--45080160	51	4.4	50	82	6	249	29	26	14	29	1.95
45081976--45082001	5	5.2	5	100	0	52	38	19	19	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45081950--45082001	26	2.0	26	81	7	61	34	15	26	23	1.94
45082822--45082852	9	3.4	9	90	0	53	38	22	12	25	1.90
45085921--45085991	26	2.7	26	82	4	81	19	16	25	38	1.93
45086137--45086257	28	4.3	28	76	5	93	28	20	21	29	1.98
45086137--45086236	28	3.5	28	80	1	101	26	21	22	31	1.98
45088124--45088169	23	2.0	24	82	4	58	43	2	30	23	1.66
45093595--45093621	12	2.2	12	100	0	54	48	0	18	33	1.49
45096943--45097125	92	1.9	91	84	10	235	27	26	24	21	1.99
45097039--45097339	113	2.7	113	88	3	423	27	23	24	24	2.00
45097308--45097556	106	2.4	105	89	2	367	31	19	24	24	1.98
45097070--45097642	283	2.0	286	86	4	798	28	21	24	24	1.99
45097522--45097685	74	2.2	73	93	1	274	25	23	25	26	2.00
45097686--45097753	13	5.5	13	75	19	65	26	2	5	64	1.30
45097695--45097739	9	5.1	9	89	5	74	28	0	2	68	1.01
45097686--45097752	26	2.9	22	79	16	89	26	2	4	65	1.26
45097695--45097735	17	2.4	17	87	4	64	29	0	2	68	1.03
45097695--45097748	26	2.1	26	96	0	99	27	1	3	66	1.19
45097989--45098022	14	2.3	15	95	5	61	38	0	26	35	1.57
45102337--45102472	43	3.2	43	78	2	130	25	18	29	27	1.98
45103136--45103181	19	2.4	20	78	10	60	45	2	2	50	1.26
45104192--45104240	23	2.1	23	85	7	64	48	12	0	38	1.41
45106269--45106455	30	6.3	30	73	7	114	40	15	24	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45106236--45106423	60	3.2	59	71	10	168	39	15	25	19	1.91
45107529--45107558	12	2.5	12	94	0	51	23	40	30	6	1.80
45113915--45113989	29	2.6	29	84	2	105	42	12	28	17	1.84
45113962--45114077	30	3.8	30	75	3	90	35	13	22	28	1.92
45122134--45122164	7	4.4	7	100	0	62	29	12	25	32	1.93
45124644--45124696	25	2.1	26	85	3	72	35	22	9	32	1.86
45128783--45128825	18	2.3	19	88	4	61	25	23	0	51	1.49
45128800--45128885	43	2.0	43	88	0	127	23	22	2	52	1.59
45129279--45129329	25	2.0	27	84	7	70	47	13	0	39	1.43
45129941--45130370	214	2.0	215	99	0	844	30	17	6	45	1.73
45132824--45132874	16	2.9	18	75	21	54	78	0	15	5	0.93
45132825--45132889	6	10.7	6	72	21	55	78	1	15	4	0.99
45132850--45132905	18	3.3	17	73	16	62	73	1	16	8	1.17
45133282--45133312	9	3.6	9	95	4	55	29	0	0	70	0.87
45133291--45133342	19	2.8	19	77	8	54	38	0	1	59	1.08
45133377--45133503	61	2.1	61	86	0	173	41	14	12	31	1.83
45135058--45135219	62	2.6	61	76	11	143	43	11	4	40	1.62
45135520--45135639	61	2.0	60	83	1	150	30	13	10	45	1.77
45136053--45136177	62	2.0	62	84	3	162	48	12	14	25	1.78
45136154--45136201	24	2.0	24	91	0	78	41	10	18	29	1.84
45136092--45136265	88	2.0	87	97	2	332	45	12	16	25	1.82
45141780--45141821	16	2.6	16	88	0	57	45	4	2	47	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45141795--45141856	23	2.7	23	87	5	81	50	0	1	48	1.10
45146863--45146890	6	4.7	6	100	0	56	64	35	0	0	0.94
45153537--45153598	24	2.6	24	86	0	88	32	30	8	29	1.86
45155359--45155420	26	2.4	26	91	0	97	43	14	9	32	1.78
45161002--45161043	20	2.2	20	87	12	61	57	4	21	16	1.58
45161492--45161521	16	1.9	16	93	6	53	30	0	20	50	1.49
45164363--45164393	15	2.1	15	93	0	53	29	9	25	35	1.88
45190641--45190703	21	3.2	20	74	24	55	42	19	1	36	1.61
45195065--45195171	25	4.3	25	81	11	114	32	20	21	25	1.97
45211233--45211308	25	3.0	25	90	0	125	31	17	21	30	1.96
45211234--45211357	50	2.5	50	83	10	139	31	19	19	29	1.96
45215280--45215375	50	1.9	49	87	6	140	25	22	32	19	1.98
45215288--45215402	50	2.3	50	80	4	126	26	24	27	20	1.99
45215676--45215724	20	2.5	20	81	15	66	57	6	24	12	1.58
45226769--45226810	21	1.9	23	90	9	70	30	11	14	42	1.81
45227255--45227349	47	2.0	47	100	0	190	37	10	16	34	1.84
45236751--45236818	20	3.2	22	77	10	70	13	32	22	32	1.92
45246659--45246705	20	2.3	20	85	10	60	29	19	12	38	1.89
45247404--45247428	13	1.9	13	100	0	50	40	0	12	48	1.40
45247564--45247597	18	1.9	17	88	5	50	61	0	8	29	1.26
45248755--45248817	6	10.2	6	81	6	72	12	3	4	79	1.01
45248842--45248887	3	15.3	3	100	0	92	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45248976--45249035	23	2.6	22	73	17	59	40	3	1	55	1.27
45249042--45249085	21	2.1	21	82	0	52	29	6	0	63	1.20
45253873--45253916	18	2.4	19	85	11	56	34	0	9	56	1.31
45254413--45254465	20	2.6	20	79	8	54	56	7	1	33	1.38
45255355--45255444	44	2.0	45	97	2	173	30	17	2	50	1.59
45262747--45262805	8	7.1	8	77	7	55	13	6	1	77	1.03
45262749--45262817	32	2.1	33	86	2	95	14	7	1	76	1.06
45269528--45269599	26	2.8	25	85	6	99	36	5	23	34	1.78
45270132--45270203	37	1.9	37	97	0	135	40	6	23	29	1.81
45278553--45278616	26	2.5	26	86	0	83	37	6	20	35	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141