genome.fa.s1.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  19  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6107595--6107666	21	3.0	24	71	22	62	47	0	0	52	1.00
6131808--6131840	16	2.0	17	88	5	50	18	21	9	51	1.73
6133947--6133977	16	1.9	16	93	0	53	54	6	6	32	1.51
6137773--6137822	25	2.0	25	88	7	75	30	0	6	64	1.18
6146255--6146292	18	2.1	18	95	0	67	71	0	5	23	1.07
6146259--6146298	18	2.2	18	86	0	53	72	2	2	22	1.09
6147428--6147480	26	2.1	26	89	10	83	16	5	37	39	1.73
6148140--6148214	29	2.6	29	91	0	123	24	16	22	37	1.93
6148860--6148911	11	4.7	11	82	0	59	46	1	26	25	1.63
6148860--6148917	22	2.6	22	76	13	64	44	1	27	25	1.64
6156156--6156242	45	1.9	46	88	2	131	34	17	28	19	1.94
6160381--6160423	22	2.0	21	95	4	77	46	0	0	53	1.00
6161150--6161197	22	2.0	25	88	11	75	41	0	4	54	1.20
6161169--6161219	27	1.9	26	88	4	75	41	0	3	54	1.19
6170427--6170457	16	1.9	16	93	0	53	48	0	0	51	1.00
6170490--6170611	39	3.1	39	62	17	99	50	7	4	36	1.52
6170490--6170646	78	2.0	79	98	1	307	49	7	5	36	1.55
6175652--6175692	15	2.7	15	92	0	64	43	7	0	48	1.30
6180388--6180413	2	13.0	2	100	0	52	50	0	0	50	1.00
6188338--6188402	32	2.1	32	97	2	123	47	12	9	30	1.72
6204269--6204329	26	2.3	26	88	5	86	40	4	1	52	1.33
6204726--6204786	25	2.3	27	83	8	81	52	0	8	39	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6204734--6204788	28	1.9	29	88	3	85	54	0	9	36	1.32
6212009--6212076	18	3.9	18	76	20	72	63	1	1	33	1.13
6213259--6213320	29	2.0	31	84	9	83	37	0	3	59	1.13
6214276--6214310	18	2.1	17	89	10	54	51	0	0	48	1.00
6216358--6216436	39	2.0	39	95	0	140	20	11	13	54	1.70
6222048--6222087	19	2.0	20	86	13	57	20	0	20	60	1.37
6223935--6223975	5	8.2	5	100	0	82	80	0	0	19	0.71
6225489--6225532	20	2.2	20	80	4	54	29	4	6	59	1.44
6229516--6229557	3	14.3	3	95	5	77	35	0	0	64	0.94
6230620--6231179	279	2.0	280	99	0	1113	40	5	10	43	1.62
6237781--6238091	154	2.0	155	99	0	615	38	7	6	47	1.58
6239094--6239160	33	2.0	33	100	0	134	49	23	2	23	1.64
6240629--6240654	6	4.3	6	100	0	52	15	0	15	69	1.20
6244519--6244558	15	2.7	15	96	0	71	0	32	50	17	1.47
6249116--6249150	7	5.0	7	100	0	70	71	0	0	28	0.86
6249186--6249234	17	2.7	19	75	12	50	36	0	6	57	1.24
6249941--6249983	19	2.3	19	84	11	54	62	0	0	37	0.95
6250199--6250495	148	2.0	149	99	0	587	35	12	16	35	1.86
6251370--6251402	15	2.2	15	100	0	66	45	0	6	48	1.27
6265146--6265183	17	2.1	19	85	9	53	55	10	13	21	1.67
6268346--6268393	23	2.0	22	84	11	60	39	8	6	45	1.59
6268812--6268844	16	2.1	16	88	5	50	60	0	3	36	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6274429--6274453	2	12.5	2	100	0	50	48	0	0	52	1.00
6278856--6278895	21	2.0	21	85	5	55	35	35	10	20	1.86
6290138--6290195	3	19.3	3	100	0	116	65	0	0	34	0.93
6291589--6291653	30	2.3	26	72	22	69	50	1	0	47	1.10
6291616--6291671	20	2.7	20	71	15	51	46	3	0	50	1.19
6291631--6291679	24	2.2	24	86	13	70	48	2	0	48	1.12
6296520--6296551	6	5.3	6	92	0	55	43	37	18	0	1.51
6304106--6304228	61	2.0	62	98	1	239	34	4	6	53	1.48
6306466--6306495	11	2.7	11	94	0	51	0	23	0	76	0.78
6306538--6306564	6	4.5	6	100	0	54	14	0	0	85	0.61
6325784--6325819	7	5.3	7	86	6	56	38	0	0	61	0.96
6325772--6325811	20	2.1	18	86	9	53	35	0	0	65	0.93
6325457--6326269	406	2.0	407	99	0	1619	35	12	11	41	1.78
6326190--6326225	7	5.3	7	86	6	56	38	0	0	61	0.96
6326178--6326217	20	2.1	18	86	9	53	35	0	0	65	0.93
6326710--6326768	30	2.0	29	83	6	75	57	3	1	37	1.25
6328244--6328286	22	2.0	22	85	0	59	20	6	9	62	1.48
6328797--6328870	30	2.5	30	82	4	80	37	5	6	50	1.52
6329136--6329174	12	3.2	12	82	13	53	43	2	0	53	1.14
6330939--6331001	31	2.0	31	93	0	108	39	14	6	39	1.71
6334311--6334375	30	2.1	32	83	8	82	38	16	6	38	1.74
6337216--6337305	45	2.0	45	84	6	119	33	1	0	65	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6337226--6337320	45	2.1	45	80	7	104	29	1	1	68	1.03
6337275--6337326	26	2.0	26	92	0	86	36	0	1	61	1.07
6348467--6348498	16	2.1	16	88	11	50	62	0	21	15	1.32
6351036--6351154	41	3.0	40	74	9	127	31	24	16	26	1.96
6351310--6351356	24	2.0	24	84	16	62	51	17	0	31	1.46
6352128--6352172	8	5.6	8	84	10	65	42	2	0	55	1.12
6353114--6353168	26	2.0	28	89	6	87	58	5	0	36	1.21
6353131--6353247	9	12.0	9	72	17	60	59	2	1	35	1.21
6353178--6353222	20	2.2	20	88	7	65	60	2	0	37	1.09
6353993--6354144	75	2.0	76	98	1	297	33	13	13	40	1.83
6357768--6357933	43	3.9	42	83	7	165	33	29	18	18	1.95
6357768--6357933	86	1.9	86	81	7	203	33	29	18	18	1.95
6362760--6362784	7	3.6	7	100	0	50	16	16	16	52	1.76
6369973--6370009	13	2.8	13	91	0	65	29	0	24	45	1.53
6372091--6372115	12	2.1	12	100	0	50	32	8	0	60	1.26
6372788--6372848	18	3.4	18	69	15	54	59	8	4	27	1.47
6372894--6372966	31	2.4	29	78	12	85	54	4	13	27	1.57
6376007--6376045	16	2.5	16	87	4	53	28	2	20	48	1.62
6380806--6380962	63	2.5	63	97	0	296	21	20	15	42	1.89
6388471--6388557	33	2.6	33	96	0	165	20	24	24	31	1.98
6390575--6390642	19	3.5	19	69	21	50	47	16	2	33	1.62
6390583--6390651	17	3.7	17	70	20	57	47	18	2	30	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6390570--6390688	40	3.0	40	96	0	211	45	17	5	31	1.70
6390600--6390674	23	3.5	22	70	20	70	42	18	5	33	1.73
6396989--6397045	27	2.1	28	83	9	73	61	5	8	24	1.46
6397711--6397757	24	1.9	25	82	4	60	27	4	2	65	1.22
6399996--6400037	21	2.0	22	81	13	52	40	2	9	47	1.49
6400105--6400134	9	3.3	9	100	0	60	66	10	0	23	1.21
6400105--6400140	18	2.0	18	88	0	54	72	8	0	19	1.10
6402964--6403006	22	1.9	23	85	4	61	32	4	6	55	1.47
6404075--6404108	17	2.0	17	88	0	50	82	5	5	5	0.95
6404949--6404989	16	2.6	17	85	14	61	19	2	7	70	1.22
6404949--6404990	15	2.7	16	89	10	61	21	2	7	69	1.25
6408843--6408873	7	4.4	7	100	0	62	87	0	12	0	0.55
6409110--6409171	22	2.8	22	73	4	63	53	8	17	20	1.69
6409109--6409170	11	5.6	11	69	7	54	51	9	17	20	1.73
6410431--6410466	18	1.9	19	88	5	56	38	0	27	33	1.57
6410786--6410832	24	2.0	24	84	16	62	31	0	17	51	1.46
6410803--6410856	21	2.6	21	75	13	58	37	0	12	50	1.41
6410989--6411123	40	3.4	41	74	12	138	25	17	24	33	1.96
6413756--6413796	18	2.1	20	86	13	59	29	4	2	63	1.28
6415811--6415852	16	2.6	16	84	0	57	38	11	21	28	1.89
6420763--6420796	17	2.0	17	88	0	50	55	2	11	29	1.50
6427898--6427935	2	19.0	2	89	10	60	50	0	2	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6431841--6431870	2	15.0	2	100	0	60	50	0	0	50	1.00
6441501--6441561	31	2.0	31	87	6	88	32	21	21	24	1.98
6442630--6442662	3	11.0	3	93	0	57	33	36	0	30	1.58
6447797--6447905	55	2.0	55	90	0	173	43	26	6	23	1.78
6457414--6457467	20	2.7	20	94	0	90	12	24	0	62	1.30
6458664--6458690	8	3.4	8	100	0	54	25	0	0	74	0.83
6459258--6459286	13	2.3	13	94	5	51	79	3	17	0	0.87
6460216--6460252	18	2.0	20	89	10	60	40	10	2	45	1.53
6463544--6463568	3	8.3	3	100	0	50	68	0	0	32	0.90
6464328--6464389	4	15.5	4	100	0	124	25	0	24	50	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141