genome.fa.s1.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  118  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37687647--37687676	7	4.3	7	95	0	51	83	0	13	3	0.77
37688360--37688409	16	3.2	16	72	16	52	34	2	4	60	1.27
37691565--37691624	29	2.1	28	78	9	66	46	15	8	30	1.74
37692348--37692396	14	3.3	15	85	8	64	65	20	0	14	1.27
37692789--37692827	14	2.7	15	80	11	55	41	10	17	30	1.83
37695721--37695759	19	2.0	20	85	5	53	25	20	7	46	1.77
37697757--37698075	109	3.0	107	85	8	436	33	18	16	30	1.94
37698403--37698445	19	2.3	18	80	7	50	58	0	2	39	1.11
37698528--37698559	9	3.6	9	95	0	55	59	0	6	34	1.23
37699733--37699775	18	2.4	18	84	0	59	11	18	9	60	1.57
37700668--37700715	16	3.2	16	80	14	57	66	2	18	12	1.33
37700685--37700715	14	2.3	13	94	5	53	70	0	16	12	1.16
37701929--37702093	45	3.7	44	71	12	138	31	16	24	27	1.96
37701894--37702137	89	2.7	88	83	4	319	31	15	23	29	1.95
37701894--37702164	44	6.1	44	73	10	228	31	14	24	28	1.95
37702154--37703031	132	6.6	132	98	0	1648	31	16	24	27	1.97
37702154--37703157	396	2.6	393	92	4	1659	31	17	24	27	1.97
37702915--37703136	110	2.0	111	91	0	365	30	17	22	28	1.97
37704646--37704678	3	11.0	3	93	0	57	30	0	0	69	0.88
37706197--37706307	40	2.8	40	87	4	154	33	24	23	18	1.97
37706197--37706331	40	3.4	40	82	3	148	34	22	22	20	1.97
37706365--37706520	41	3.8	41	89	0	240	25	20	24	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37707761--37707807	25	1.9	24	86	4	67	51	4	8	36	1.52
37710400--37710666	43	6.3	43	84	3	342	24	19	29	26	1.98
37710400--37710666	85	3.1	84	86	2	356	24	19	29	26	1.98
37710400--37710666	128	2.1	128	84	2	358	24	19	29	26	1.98
37710747--37710806	21	2.9	21	97	0	111	51	23	15	10	1.72
37710927--37710973	23	2.0	23	95	0	85	38	14	17	29	1.89
37711799--37711826	9	3.1	9	100	0	56	32	10	10	46	1.73
37714131--37714175	22	2.0	22	95	0	81	17	28	8	44	1.79
37717596--37717638	15	2.8	15	82	3	50	30	2	0	67	1.03
37717672--37717729	18	3.2	18	82	7	64	53	1	0	44	1.10
37719316--37719363	11	4.4	11	75	0	51	64	8	6	20	1.43
37723417--37723461	21	2.0	23	87	8	67	42	2	15	40	1.59
37724141--37724183	23	2.0	21	81	9	50	62	18	4	13	1.48
37724274--37724313	20	2.1	19	85	4	53	65	12	2	20	1.38
37725546--37725580	16	2.1	16	89	5	52	8	5	28	57	1.52
37727648--37727698	26	2.0	26	88	7	77	47	9	3	39	1.55
37740305--37740336	15	2.1	15	94	0	55	68	9	6	15	1.36
37744992--37745017	13	2.0	13	100	0	52	38	0	7	53	1.30
37745586--37745644	25	2.4	25	94	0	100	16	25	18	38	1.92
37745599--37745690	22	4.0	22	84	4	103	16	22	18	42	1.89
37747902--37747983	27	2.9	28	69	24	64	34	3	1	60	1.22
37747952--37747985	14	2.4	14	85	0	50	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37756237--37756281	6	7.3	6	80	5	54	44	13	20	22	1.85
37756594--37756651	20	2.8	20	69	27	50	44	18	5	31	1.72
37756580--37756675	40	2.4	41	86	8	128	41	19	6	32	1.77
37758477--37758510	16	2.1	16	94	0	59	14	11	2	70	1.27
37765416--37765477	27	2.3	27	80	5	72	45	0	6	48	1.28
37770667--37770706	21	1.9	21	89	0	62	30	20	12	37	1.89
37770668--37770714	21	2.2	21	84	0	58	27	21	10	40	1.86
37774553--37774587	17	2.0	18	94	5	63	42	0	5	51	1.25
37780138--37780260	61	2.0	61	100	0	246	41	8	22	27	1.82
37780526--37780607	25	3.3	25	82	0	101	15	28	21	34	1.95
37780714--37780781	25	2.7	25	76	0	73	22	30	20	26	1.98
37785845--37785878	17	2.0	17	88	0	50	23	5	14	55	1.61
37788588--37788647	28	2.1	27	82	14	68	65	3	3	28	1.25
37788588--37788647	29	2.1	29	82	17	72	65	3	3	28	1.25
37797204--37797251	24	2.0	24	100	0	96	41	4	8	45	1.53
37797398--37797460	25	2.4	26	92	7	101	41	11	0	47	1.39
37797519--37797570	27	1.9	27	88	0	77	26	25	30	17	1.97
37797613--37797891	30	9.2	30	69	20	138	70	0	29	0	0.87
37797619--37797908	78	3.7	78	99	0	571	71	0	28	0	0.87
37797698--37797908	48	4.1	49	72	19	189	71	0	28	0	0.86
37804062--37804106	3	14.7	3	90	4	72	66	2	0	31	1.04
37804326--37804428	27	3.8	26	75	7	98	20	33	21	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37804459--37804492	17	2.0	17	88	0	50	8	2	8	79	1.03
37804485--37804547	26	2.4	26	89	2	99	46	0	12	41	1.42
37809802--37809848	24	2.0	24	91	0	76	55	8	12	23	1.64
37811933--37811989	29	2.0	29	96	0	105	40	0	21	38	1.53
37812156--37812217	21	3.0	21	75	0	70	19	19	25	35	1.95
37812156--37812300	42	3.5	41	66	16	109	21	20	22	35	1.96
37812155--37812309	83	1.9	83	95	0	283	20	21	21	36	1.96
37815220--37815371	45	3.4	45	83	3	166	35	24	16	23	1.95
37817004--37817046	18	2.4	19	80	11	54	53	6	2	37	1.41
37824269--37824314	9	5.1	9	94	0	83	30	10	13	45	1.77
37824368--37824398	9	3.4	9	90	0	53	38	22	12	25	1.90
37825744--37825896	82	1.9	82	100	0	306	25	9	16	48	1.76
37827094--37827118	10	2.5	10	100	0	50	20	28	0	52	1.47
37829255--37829492	127	1.9	127	84	5	320	34	15	15	34	1.89
37829809--37829855	23	2.0	23	91	0	76	51	12	4	31	1.59
37832514--37832579	5	13.4	5	78	15	59	83	0	15	1	0.72
37832515--37832577	6	10.5	6	82	15	69	85	0	12	1	0.66
37832515--37832579	30	2.2	30	89	8	98	84	0	13	1	0.69
37833526--37833753	89	2.6	89	88	0	339	27	23	23	25	2.00
37833528--37833841	89	3.5	89	82	1	335	27	23	23	26	2.00
37833603--37834204	88	6.8	88	81	2	553	30	20	21	27	1.98
37833800--37833937	44	3.1	44	63	8	109	28	23	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37833685--37834198	264	1.9	264	83	0	652	31	18	21	27	1.97
37834388--37834482	44	2.2	43	81	7	104	31	20	22	26	1.98
37834413--37834765	44	7.9	44	73	13	220	33	18	19	27	1.96
37836499--37836548	26	1.9	26	84	8	66	28	14	8	50	1.70
37836973--37837214	127	1.9	127	81	5	292	32	16	16	35	1.91
37841926--37842035	54	2.0	54	92	0	184	45	35	8	10	1.69
37843202--37843245	20	2.2	20	83	0	52	43	6	4	45	1.51
37843119--37843363	120	2.0	122	97	1	467	33	11	13	42	1.80
37843848--37843882	5	7.0	5	90	9	54	17	0	2	80	0.84
37847879--37847914	17	2.1	17	100	0	72	38	0	5	55	1.23
37849949--37849991	22	1.9	22	86	13	61	27	2	4	65	1.25
37864224--37864248	2	12.5	2	100	0	50	52	0	48	0	1.00
37864161--37864291	69	1.9	69	96	0	244	45	6	29	19	1.74
37866659--37866738	31	2.7	29	82	5	79	35	10	8	46	1.68
37866909--37866975	31	2.3	27	73	14	62	43	13	7	35	1.72
37868027--37868068	13	3.5	13	81	12	54	59	2	38	0	1.10
37868019--37868074	23	2.4	24	79	8	71	64	1	32	1	1.14
37870948--37870975	12	2.3	12	100	0	56	46	17	7	28	1.75
37871072--37871113	22	1.9	22	95	0	75	57	11	0	30	1.35
37871072--37871228	19	8.2	19	73	16	110	56	10	0	32	1.39
37871384--37871416	3	11.3	3	87	6	50	0	36	0	63	0.95
37871380--37871428	14	3.7	13	84	13	55	0	36	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37871554--37871618	27	2.4	27	92	0	103	15	30	23	30	1.95
37871569--37871629	27	2.3	27	88	5	88	18	29	24	27	1.98
37871687--37871745	26	2.2	26	85	8	75	47	3	0	49	1.18
37877111--37877157	17	2.8	17	80	6	60	42	0	31	25	1.55
37885645--37885707	27	2.4	27	94	2	110	47	0	11	41	1.39
37886105--37886169	31	2.1	31	86	11	89	50	0	4	44	1.22
37888777--37889420	134	4.8	135	80	10	686	22	18	18	41	1.90
37888736--37889565	267	3.1	266	83	5	922	23	18	16	41	1.90
37888716--37889612	398	2.3	391	84	6	1116	23	18	17	41	1.90
37891946--37892028	42	2.0	42	85	0	112	39	8	14	37	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141