genome.fa.s1.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  125  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39856385--39856448	10	6.6	10	72	13	53	53	1	3	42	1.26
39857093--39857121	5	5.8	5	100	0	58	58	0	0	41	0.98
39857862--39857899	6	6.2	6	82	17	51	13	2	2	81	0.90
39857862--39857899	19	2.1	18	85	14	51	13	2	2	81	0.90
39858745--39858782	3	13.0	3	94	5	69	31	0	0	68	0.90
39858941--39858965	13	1.9	13	100	0	50	20	0	0	80	0.72
39859194--39859338	72	2.0	74	89	5	224	28	17	18	35	1.93
39865582--39865612	15	2.1	15	100	0	62	32	12	12	41	1.81
39867047--39867075	2	14.5	2	100	0	58	48	0	0	51	1.00
39868112--39868138	14	1.9	14	100	0	54	22	0	29	48	1.51
39868973--39869053	24	3.4	24	84	0	108	49	4	18	27	1.68
39870258--39870348	40	2.3	40	82	1	103	20	23	29	26	1.99
39879694--39879729	3	12.0	3	93	0	63	36	33	0	30	1.58
39888390--39888506	61	1.9	59	89	6	182	41	4	2	52	1.35
39891145--39891179	19	1.9	17	88	11	52	34	28	2	34	1.72
39891546--39891582	9	4.1	9	92	0	65	45	13	10	29	1.77
39895615--39895662	21	2.2	23	85	7	64	52	0	0	47	1.00
39896758--39896812	21	2.5	22	82	11	60	58	7	3	30	1.43
39907760--39907812	24	2.2	24	96	3	99	32	11	13	43	1.79
39910594--39910650	20	2.7	22	71	20	59	61	8	10	19	1.54
39911065--39911165	18	5.7	18	72	9	73	58	3	4	32	1.38
39911133--39911185	24	2.2	24	86	0	70	56	5	3	33	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39911065--39911163	3	33.3	3	71	13	62	59	4	5	31	1.37
39912224--39912280	27	2.1	28	83	9	73	8	3	35	52	1.50
39918932--39919131	98	2.0	99	99	0	393	36	7	7	49	1.57
39923116--39923385	143	1.9	143	82	1	344	35	14	21	27	1.93
39924716--39925031	170	1.9	171	88	2	483	24	14	14	46	1.82
39930649--39930712	32	1.9	32	84	9	83	37	3	4	54	1.37
39941730--39941800	28	2.5	28	84	8	83	43	0	4	52	1.20
39941844--39941908	16	4.1	16	88	7	105	23	35	6	35	1.80
39943928--39943957	14	2.1	14	93	0	51	43	6	16	33	1.74
39944420--39944478	29	2.0	29	100	0	118	32	6	6	54	1.53
39946664--39946736	36	2.0	36	91	0	119	39	4	20	35	1.72
39948410--39948459	26	1.9	26	83	0	64	50	6	10	34	1.60
39949382--39949421	21	1.9	21	85	10	55	22	5	2	70	1.19
39950219--39950292	31	2.3	32	79	6	78	43	4	2	50	1.35
39951261--39951315	19	2.9	19	76	10	51	52	7	0	40	1.29
39953064--39953105	2	21.5	2	95	4	77	0	0	47	52	1.00
39959700--39959894	50	3.9	50	78	2	160	22	26	21	29	1.99
39960286--39960346	30	2.0	30	83	0	77	29	24	6	39	1.80
39972846--39972877	2	16.0	2	100	0	64	50	0	0	50	1.00
39973140--39973174	2	17.5	2	100	0	70	0	48	0	51	1.00
39977737--39977775	18	2.2	17	86	13	53	33	0	20	46	1.51
39978001--39978073	23	3.2	23	82	0	83	28	19	20	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39988418--39988468	21	2.4	21	80	9	68	29	7	29	33	1.85
39989415--39989448	17	2.0	17	88	0	50	32	2	2	61	1.26
39990335--39990379	19	2.4	18	85	7	54	68	0	0	31	0.89
40004695--40005825	565	2.0	566	99	0	2255	37	9	7	45	1.65
40011439--40011478	21	1.9	21	84	0	53	35	7	20	37	1.81
40048217--40048250	15	2.2	16	89	5	52	29	14	5	50	1.67
40048658--40048697	13	3.1	13	88	0	62	30	7	22	40	1.81
40049133--40049176	20	2.2	19	84	15	54	65	9	4	20	1.38
40055311--40055353	17	2.6	17	81	3	52	65	9	0	25	1.22
40055365--40055391	5	5.4	5	100	0	54	77	0	0	22	0.76
40055345--40055406	28	2.3	29	83	10	78	74	0	0	25	0.82
40055365--40055411	17	2.9	17	82	14	55	74	0	0	25	0.82
40058296--40058355	24	2.6	23	77	15	61	36	1	0	61	1.06
40065549--40065614	30	2.2	30	83	0	87	33	12	9	45	1.73
40065654--40065693	21	1.9	20	85	10	53	32	10	2	55	1.47
40075460--40075485	7	3.7	7	100	0	52	11	11	15	61	1.57
40078526--40078594	35	1.9	36	94	2	122	26	4	17	52	1.63
40079842--40079884	20	2.2	19	91	4	68	48	0	4	46	1.22
40079890--40079919	3	10.0	3	100	0	60	66	0	0	33	0.92
40089727--40089767	20	2.0	20	86	9	57	9	0	41	48	1.36
40095056--40095101	20	2.2	20	96	3	83	21	17	23	36	1.94
40102400--40102569	42	4.0	42	100	0	340	40	7	14	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40106163--40106203	20	2.0	20	85	9	55	58	2	4	34	1.32
40106174--40106213	20	1.9	20	85	10	53	57	5	2	35	1.34
40107079--40107131	3	17.7	3	88	0	79	33	60	0	5	1.20
40107079--40107202	30	4.1	30	73	4	88	29	56	4	8	1.51
40107142--40107182	21	2.0	21	90	0	64	29	53	4	12	1.58
40111886--40112012	60	2.1	60	85	2	166	40	6	11	42	1.66
40123170--40123194	13	1.9	13	100	0	50	24	0	0	76	0.80
40123171--40123214	16	2.9	15	90	6	70	27	0	0	72	0.85
40145116--40145142	13	2.1	13	100	0	54	44	22	0	33	1.53
40146131--40146197	16	4.2	16	67	17	50	32	7	1	58	1.35
40146379--40146426	24	2.0	22	81	18	53	47	2	8	41	1.45
40148910--40149197	144	2.0	145	92	1	479	44	17	14	23	1.85
40150398--40150455	29	2.0	29	100	0	116	31	31	6	31	1.84
40154567--40154652	42	2.1	41	93	4	147	44	13	17	24	1.85
40155771--40155821	17	3.1	17	77	13	52	56	0	1	41	1.10
40164355--40164407	21	2.5	21	90	0	88	26	7	35	30	1.84
40177473--40177634	81	2.0	81	97	2	308	33	25	9	30	1.89
40178794--40178839	18	2.4	19	82	7	58	43	2	0	54	1.12
40179285--40179309	3	8.3	3	100	0	50	68	0	0	32	0.90
40183621--40184255	317	2.0	318	99	0	1263	30	12	15	41	1.85
40185188--40185458	85	3.1	88	84	7	354	36	18	11	34	1.86
40185217--40185518	85	3.4	90	80	9	262	35	18	10	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40185728--40185769	19	2.3	18	84	15	59	38	2	2	57	1.25
40185697--40185757	27	2.2	29	77	11	74	36	1	3	59	1.24
40185699--40185796	29	3.4	28	78	12	85	32	3	2	62	1.22
40185677--40185785	47	2.3	47	84	7	132	34	1	2	60	1.22
40187015--40187039	6	4.2	6	100	0	50	84	16	0	0	0.63
40191101--40191164	31	2.1	31	100	0	128	59	9	15	15	1.60
40191599--40191629	15	2.1	14	94	5	53	87	12	0	0	0.55
40191654--40191734	27	3.0	28	87	5	114	30	22	28	18	1.97
40191810--40191879	19	3.7	19	82	3	97	37	10	0	52	1.35
40191815--40191885	37	1.9	37	97	0	133	40	9	0	49	1.36
40192002--40192146	71	2.0	72	94	1	256	34	16	17	31	1.92
40192227--40192295	19	3.7	19	76	5	79	52	1	10	36	1.44
40192227--40192304	19	4.1	19	76	5	59	51	1	11	35	1.46
40192472--40192516	23	2.0	23	95	0	81	57	0	6	35	1.25
40203718--40203754	18	2.1	18	94	0	65	35	13	0	51	1.41
40206494--40206606	59	2.0	55	86	6	154	27	16	7	47	1.74
40214827--40214855	12	2.4	12	100	0	58	41	17	10	31	1.83
40215256--40215300	18	2.5	19	80	20	60	44	2	11	42	1.52
40215781--40215819	21	1.9	20	89	5	60	43	5	17	33	1.72
40233518--40233559	20	2.1	20	86	0	57	47	0	7	45	1.30
40233636--40233666	15	2.1	15	100	0	62	48	32	0	19	1.49
40245717--40245750	15	2.3	15	89	0	50	14	41	0	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40245747--40245814	3	22.7	3	83	5	84	30	32	1	35	1.67
40253166--40253275	26	4.1	28	70	13	70	59	5	7	28	1.47
40253324--40253374	25	2.0	27	85	14	72	66	1	1	29	1.13
40254487--40254524	18	2.1	18	85	9	51	13	7	34	44	1.72
40255477--40255533	29	2.0	28	86	10	80	14	10	0	75	1.05
40255477--40255531	15	3.6	15	76	18	60	14	10	0	74	1.07
40256994--40257116	65	1.9	64	85	5	167	31	14	8	44	1.76
40264547--40264637	27	3.4	27	83	3	94	17	23	36	23	1.95
40268933--40268957	2	12.5	2	100	0	50	48	0	0	52	1.00
40274056--40274094	18	2.2	18	86	9	53	53	2	5	38	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141