genome.fa.s1.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  99  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32181973--32182143	40	4.3	40	82	7	168	28	21	23	25	1.99
32181973--32182143	80	2.1	80	84	6	213	28	21	23	25	1.99
32182126--32182398	141	1.9	139	88	4	406	30	20	20	28	1.97
32182327--32182430	40	2.6	40	87	4	138	26	18	24	30	1.98
32182734--32182886	7	21.6	7	72	10	78	18	0	41	39	1.51
32182734--32182776	15	3.0	14	90	6	68	18	0	34	46	1.50
32182782--32182858	21	3.6	21	83	1	100	16	0	51	31	1.45
32185094--32185157	31	2.1	31	100	0	128	28	12	12	46	1.78
32188221--32188390	32	5.5	32	73	8	138	26	27	14	32	1.94
32188190--32188324	61	2.2	61	84	2	164	25	23	17	34	1.96
32208911--32209010	44	2.2	44	83	1	119	41	19	20	20	1.91
32208989--32209116	45	2.8	45	83	2	159	38	14	21	25	1.92
32213706--32213744	20	1.9	20	84	5	51	41	20	7	30	1.80
32215313--32215506	55	3.5	56	82	4	232	25	20	12	41	1.88
32222670--32222921	27	9.4	26	78	10	226	17	20	19	42	1.89
32222689--32222921	81	2.9	81	86	1	299	17	20	19	42	1.89
32223504--32223536	15	2.1	16	88	5	50	51	0	48	0	1.00
32223506--32223549	10	4.6	10	77	11	56	50	0	47	2	1.13
32226836--32226905	25	2.8	25	88	0	95	24	37	12	25	1.91
32226836--32226897	25	2.5	25	91	0	106	20	37	14	27	1.92
32227039--32227094	28	2.0	28	93	6	96	25	30	12	32	1.92
32227044--32227107	28	2.3	28	89	2	94	28	25	12	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32231814--32231953	39	3.6	38	74	4	118	20	27	17	33	1.96
32236600--32236645	24	1.9	24	86	8	67	21	19	26	32	1.97
32236588--32236696	49	2.2	49	81	4	130	24	22	19	33	1.97
32236593--32236696	25	4.2	25	76	13	72	25	23	20	31	1.98
32242914--32242983	25	2.8	25	81	10	65	30	24	18	27	1.98
32242938--32242985	25	1.9	25	87	8	71	27	22	20	29	1.99
32243154--32243215	31	2.1	30	82	17	76	46	8	16	29	1.75
32246550--32246609	32	1.9	31	82	3	75	23	16	11	48	1.79
32250676--32250728	26	2.0	28	85	7	74	66	5	26	1	1.25
32252714--32252746	11	2.9	12	91	8	52	6	15	0	78	0.93
32252783--32252811	2	14.5	2	100	0	58	48	0	0	51	1.00
32253002--32253039	17	2.2	17	95	0	67	42	13	15	28	1.85
32254794--32255140	173	2.0	172	99	0	685	33	17	19	29	1.95
32259695--32259744	22	2.4	19	81	18	64	14	32	4	50	1.61
32264378--32264410	8	4.1	8	96	0	57	72	0	0	27	0.85
32284037--32284079	21	2.0	21	100	0	86	30	13	9	46	1.75
32289174--32289206	11	2.8	12	90	4	50	33	3	12	51	1.54
32289694--32289766	38	1.9	38	91	0	119	31	1	32	34	1.67
32297045--32297121	38	2.0	38	89	0	118	33	1	33	31	1.66
32297885--32297951	23	2.8	23	86	4	62	29	17	31	20	1.96
32297896--32297951	23	2.4	23	93	0	94	26	14	37	21	1.92
32300206--32300312	46	2.3	47	87	4	146	32	20	21	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32302655--32302696	20	2.1	20	86	0	57	47	0	7	45	1.30
32306002--32306061	21	2.8	22	75	12	63	73	3	18	5	1.16
32306002--32306061	11	5.6	10	74	18	50	73	3	18	5	1.16
32306404--32306441	20	1.9	20	84	10	51	52	0	15	31	1.43
32306939--32307067	40	3.3	40	74	9	122	25	17	23	34	1.96
32308110--32308315	27	7.7	27	90	2	292	32	19	23	24	1.98
32308544--32308678	32	4.2	32	74	0	126	22	23	20	32	1.98
32308548--32308699	64	2.4	64	85	0	205	25	23	18	32	1.97
32317111--32318374	525	2.4	524	94	1	2205	37	21	17	23	1.94
32318724--32318754	9	3.4	9	90	0	53	25	12	22	38	1.90
32318808--32318844	9	4.1	9	92	0	65	45	13	10	29	1.77
32319170--32319226	17	3.4	17	73	22	66	24	40	0	35	1.56
32319168--32319241	33	2.2	33	100	0	148	21	37	0	40	1.54
32319187--32319241	16	3.4	16	72	22	60	18	40	0	41	1.50
32321085--32321591	169	3.0	169	90	1	813	27	26	17	28	1.97
32321610--32321786	44	4.0	44	87	0	228	29	26	17	25	1.97
32327272--32327342	26	2.9	24	66	22	58	45	8	12	33	1.73
32332924--32332995	28	2.5	28	88	2	99	38	20	26	13	1.90
32332952--32333125	88	2.0	89	88	3	262	35	19	27	17	1.94
32332952--32333127	45	4.0	44	78	6	194	35	19	28	17	1.94
32333068--32333099	17	1.9	17	93	6	57	34	18	34	12	1.89
32333084--32333235	28	5.4	28	82	7	175	36	19	28	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32333087--32333243	84	1.9	85	91	1	262	36	19	28	15	1.93
32341577--32341680	45	2.3	44	83	3	127	38	20	27	13	1.90
32341641--32341733	28	3.3	28	87	0	141	45	18	20	16	1.86
32341696--32341827	44	3.0	43	80	1	156	39	17	25	18	1.92
32344265--32344293	15	1.9	15	100	0	58	31	0	13	55	1.39
32350465--32350503	18	2.1	19	90	4	62	58	5	2	33	1.33
32352756--32352787	17	1.9	17	93	6	57	31	18	37	12	1.88
32352772--32352915	28	5.1	28	81	1	144	34	18	30	15	1.93
32352822--32352950	28	4.6	28	79	3	98	39	20	27	13	1.89
32353879--32353937	31	1.9	31	82	0	73	40	6	5	47	1.52
32358147--32358182	2	18.0	2	88	0	54	50	5	0	44	1.25
32363808--32363946	28	4.9	29	88	2	203	12	20	23	43	1.86
32363809--32363946	57	2.4	57	89	1	206	12	21	23	42	1.86
32364703--32364899	109	1.8	109	86	2	288	28	23	21	25	1.99
32368386--32368489	51	2.0	51	88	3	156	25	13	13	47	1.80
32369185--32369237	21	2.5	21	81	6	63	62	1	1	33	1.17
32377020--32377146	24	5.3	24	74	0	119	19	15	18	45	1.85
32378498--32378541	21	2.1	21	83	8	54	34	25	11	29	1.91
32379249--32379333	42	2.0	42	95	0	152	50	10	10	28	1.70
32380726--32380767	21	2.0	22	90	4	68	40	23	0	35	1.55
32384711--32384890	88	2.0	88	89	1	270	41	9	20	28	1.84
32385371--32385438	29	2.4	29	87	2	93	13	23	20	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32389228--32389253	7	3.7	7	100	0	52	26	0	0	73	0.84
32390151--32390179	2	14.5	2	100	0	58	48	0	0	51	1.00
32391580--32391604	11	2.3	11	100	0	50	68	8	0	24	1.16
32392543--32392609	35	1.9	35	90	0	107	14	8	31	44	1.76
32392553--32392646	35	2.7	34	83	5	107	14	10	30	43	1.80
32402410--32402434	13	1.9	13	100	0	50	56	12	0	32	1.36
32402490--32402555	31	2.2	29	82	10	80	30	10	12	46	1.75
32411603--32411635	17	1.9	17	100	0	66	48	24	9	18	1.76
32416600--32416625	2	13.0	2	100	0	52	50	0	0	50	1.00
32431065--32431159	1	95.0	1	74	0	82	87	4	7	1	0.71
32431065--32431159	19	5.0	19	87	3	102	87	4	7	1	0.71
32431659--32431705	14	3.3	14	85	8	60	76	0	10	12	1.02
32433060--32433622	50	11.3	50	65	6	201	29	23	25	21	1.99
32433053--32433621	100	5.7	100	88	3	815	29	23	25	21	1.99
32444492--32444586	40	2.4	40	85	3	120	17	20	21	41	1.91
32456972--32457014	21	2.0	21	86	9	59	46	4	0	48	1.22
32457914--32457944	14	2.1	15	94	5	55	58	0	0	41	0.98
32458964--32459002	20	1.9	21	84	5	53	25	0	28	46	1.53
32460531--32460566	14	2.3	17	86	13	51	38	0	27	33	1.57
32460617--32460873	43	6.0	43	80	2	264	21	15	24	38	1.92
32460627--32460877	86	2.9	86	82	3	299	21	15	25	38	1.92
32461583--32461646	29	2.2	29	97	0	119	31	4	26	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32461674--32461729	25	2.4	22	78	16	67	23	12	48	16	1.80
32461680--32461733	25	2.2	25	96	0	99	24	12	48	14	1.79
32463228--32463443	27	8.0	26	81	7	216	41	20	14	23	1.90
32463237--32463433	54	3.7	53	85	4	245	40	21	14	23	1.90
32463237--32463433	81	2.4	81	85	3	272	40	21	14	23	1.90
32470012--32470043	7	4.6	7	100	0	64	43	43	0	12	1.42
32478956--32478992	19	1.9	19	89	10	58	5	24	0	70	1.08
32480171--32480240	21	3.3	21	71	11	54	22	22	34	20	1.97
32480860--32480891	3	11.0	3	93	6	57	34	0	0	65	0.93
32486307--32486342	17	2.1	18	89	5	56	33	0	2	63	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141