genome.fa.s1.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  20  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6469580--6469678	29	3.4	30	80	5	114	34	15	2	48	1.56
6469697--6469752	5	11.0	5	88	3	85	39	0	0	60	0.97
6469858--6469884	10	2.7	10	100	0	54	77	7	0	14	0.97
6469899--6470367	18	26.3	18	70	11	277	32	15	9	42	1.79
6469889--6470013	56	2.2	57	79	9	132	35	15	8	40	1.78
6469956--6470307	35	10.0	35	75	13	228	31	16	10	41	1.82
6477867--6477936	18	3.8	19	74	24	69	82	10	5	1	0.88
6477868--6477936	20	3.8	18	76	19	72	82	10	5	1	0.89
6477877--6477942	11	6.0	11	78	16	50	83	10	6	0	0.81
6477881--6477925	11	3.2	15	73	26	53	84	13	2	0	0.72
6478802--6480491	78	22.0	79	80	10	1617	26	17	20	35	1.94
6478822--6480506	231	7.3	231	79	11	1562	26	17	20	35	1.94
6479813--6480470	80	8.5	80	75	10	379	27	16	20	35	1.94
6480633--6480778	29	5.0	29	83	2	166	33	19	2	44	1.65
6480632--6480792	30	5.4	30	81	3	164	34	18	2	44	1.63
6480630--6480778	59	2.5	59	88	0	217	34	18	2	44	1.64
6481001--6481059	31	1.9	30	86	6	82	66	3	18	11	1.38
6481167--6481199	11	2.9	11	95	4	57	72	0	27	0	0.85
6481162--6481217	18	3.1	18	80	12	53	71	0	28	0	0.86
6481486--6481528	20	2.1	20	86	4	59	76	0	23	0	0.78
6481484--6481522	12	3.2	12	85	7	53	74	0	25	0	0.82
6482882--6482968	10	9.1	10	72	8	65	34	2	0	63	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6482887--6482970	19	4.4	18	76	15	71	35	2	0	61	1.09
6482882--6482970	9	9.4	9	76	9	72	34	2	0	62	1.07
6483137--6483195	28	2.1	28	84	9	77	23	3	6	66	1.32
6490502--6490551	12	3.9	13	77	12	59	38	0	2	60	1.09
6491569--6491617	6	8.2	6	86	8	55	36	2	8	53	1.43
6498452--6498477	6	4.3	6	100	0	52	84	0	0	15	0.62
6515710--6515745	11	3.4	10	85	14	54	80	0	8	11	0.90
6516533--6516582	4	12.5	4	100	0	100	26	0	24	50	1.50
6516875--6516946	3	24.3	3	91	2	119	63	2	0	33	1.08
6518058--6518096	19	2.2	19	86	9	55	0	10	17	71	1.12
6519109--6519155	16	2.7	17	78	15	51	55	0	0	44	0.99
6525689--6525786	28	3.5	28	80	6	117	17	13	19	50	1.78
6532878--6532946	27	2.5	29	90	6	108	39	10	1	49	1.46
6532996--6533182	27	6.9	27	93	4	299	27	26	29	16	1.97
6533468--6533493	3	8.7	3	100	0	52	34	0	0	65	0.93
6533499--6533616	61	1.9	62	83	13	154	33	0	11	54	1.37
6537766--6537819	24	2.2	24	93	0	90	53	0	9	37	1.33
6537766--6537831	24	2.6	25	85	7	80	50	1	10	37	1.47
6538040--6538396	118	3.1	119	85	8	554	48	9	4	37	1.55
6555947--6556051	33	3.3	33	68	12	112	52	17	7	22	1.69
6555941--6556062	61	2.0	61	100	0	244	52	14	8	24	1.69
6556708--6556948	120	2.0	121	99	0	475	37	3	9	49	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6557150--6557237	30	2.9	29	73	15	72	39	4	4	51	1.43
6558387--6558500	48	2.4	48	80	4	122	30	19	21	28	1.97
6558926--6559013	30	2.9	29	73	15	72	39	4	4	51	1.43
6566843--6567047	102	2.0	103	99	0	403	41	7	7	42	1.62
6567466--6567766	150	2.0	151	99	0	595	36	10	12	39	1.78
6569804--6570330	132	4.0	132	94	0	885	29	20	23	26	1.99
6572779--6572836	26	2.1	28	84	6	75	43	3	0	53	1.17
6573090--6573141	26	2.0	26	81	7	61	34	0	0	65	0.93
6576890--6576940	20	2.9	18	80	13	54	19	7	9	62	1.50
6578736--6578765	1	30.0	1	100	0	60	100	0	0	0	0.00
6585811--6585873	22	2.8	23	80	20	71	55	0	0	44	0.99
6590227--6590485	129	2.0	130	99	0	511	42	8	4	44	1.55
6592665--6592738	36	2.1	36	100	0	148	56	16	5	21	1.59
6593190--6593410	112	2.0	112	90	1	354	34	15	19	30	1.93
6595670--6595694	11	2.3	11	100	0	50	40	8	0	52	1.31
6595654--6595736	40	2.1	39	86	6	114	30	4	0	65	1.14
6595680--6595766	30	2.9	30	83	13	101	33	3	0	63	1.11
6595694--6595725	16	2.0	16	93	0	55	28	0	0	71	0.86
6595702--6595766	30	2.2	29	94	2	112	33	3	0	63	1.10
6596226--6596585	178	2.0	179	99	0	713	36	13	5	44	1.67
6598129--6598183	22	2.5	23	79	5	69	30	5	3	60	1.37
6599123--6599161	20	2.0	20	89	0	60	64	2	0	33	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6604873--6604900	13	2.2	13	100	0	56	57	7	7	28	1.52
6609707--6610133	213	2.0	214	99	0	847	25	10	13	50	1.73
6622378--6622411	11	3.1	11	91	0	50	29	0	2	67	1.05
6622425--6622468	18	2.2	20	84	11	56	36	0	6	56	1.26
6628000--6628024	10	2.5	10	100	0	50	64	8	0	28	1.22
6645887--6645921	16	2.2	16	100	0	70	22	31	8	37	1.85
6654133--6654160	7	4.0	7	100	0	56	14	14	14	57	1.66
6655438--6655478	15	2.5	17	80	11	59	63	0	0	36	0.95
6660994--6661040	20	2.3	21	85	3	60	31	2	6	59	1.34
6661477--6661554	31	2.5	31	81	6	88	28	12	11	47	1.76
6661719--6661762	22	2.0	22	82	8	54	65	0	4	29	1.12
6665826--6666005	87	2.0	89	94	4	321	23	6	13	57	1.58
6671853--6672004	41	3.7	41	76	5	137	23	19	23	33	1.97
6672903--6673158	24	11.1	24	67	15	112	26	8	19	45	1.78
6672817--6673173	69	5.2	68	88	4	477	26	9	19	44	1.81
6672817--6673173	137	2.6	137	88	3	495	26	9	19	44	1.81
6672853--6673198	23	15.1	23	66	13	108	26	9	20	43	1.82
6674317--6674344	14	2.0	14	100	0	56	42	14	7	35	1.73
6675345--6675500	30	5.2	30	78	9	140	31	23	4	41	1.74
6675338--6675498	59	2.7	59	78	8	148	32	22	4	40	1.74
6675757--6675782	11	2.4	11	100	0	52	69	15	7	7	1.35
6675862--6675933	21	3.4	21	77	12	69	70	12	13	2	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6675878--6675939	19	3.2	19	78	17	65	72	11	14	1	1.19
6676025--6676085	11	5.3	11	70	18	52	75	1	21	1	0.98
6676062--6676097	14	2.6	14	90	0	54	75	0	25	0	0.81
6676183--6676238	22	2.4	24	80	20	82	67	7	25	0	1.15
6676183--6676238	21	2.6	22	91	5	89	67	7	25	0	1.15
6676418--6676451	14	2.6	14	90	9	54	20	11	2	64	1.39
6676673--6676710	20	1.9	20	88	0	58	34	21	7	36	1.82
6676833--6676878	17	2.6	17	83	12	58	30	15	8	45	1.76
6676935--6677019	17	4.9	16	68	16	53	35	12	12	38	1.82
6676935--6677021	34	2.5	35	83	9	97	34	13	12	39	1.83
6677070--6677170	18	5.7	18	72	13	84	33	13	10	41	1.80
6682741--6682783	20	2.1	21	95	4	79	81	4	9	4	0.97
6682726--6682798	31	2.4	31	82	13	82	82	5	9	2	0.93
6683649--6684202	75	7.3	75	86	4	684	27	14	18	39	1.90
6683666--6684202	228	2.3	226	87	4	747	27	15	18	38	1.91
6684358--6684451	30	3.2	30	87	1	127	26	21	7	44	1.78
6684765--6684790	11	2.4	11	100	0	52	69	15	7	7	1.35
6684885--6684949	20	3.2	20	79	16	71	75	10	12	1	1.12
6684883--6684949	21	3.1	21	83	16	84	76	10	11	1	1.10
6685034--6685107	7	10.3	7	73	11	51	74	1	24	0	0.90
6685036--6685107	11	6.3	11	75	15	74	75	1	23	0	0.89
6685034--6685119	14	6.0	14	71	15	68	73	1	25	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6685034--6685117	19	4.6	19	77	15	88	72	1	26	0	0.92
6685036--6685107	4	19.8	4	71	21	52	75	1	23	0	0.89
6685253--6685298	14	3.5	14	74	17	53	23	34	32	8	1.86
6685244--6685307	25	2.6	25	94	0	110	25	34	29	10	1.90
6685448--6685481	14	2.6	14	90	9	54	20	11	2	64	1.39
6685853--6685901	17	2.9	16	79	11	53	30	16	10	42	1.81
6686096--6686178	35	2.3	36	91	2	132	32	13	10	43	1.78
6686095--6686180	18	4.8	18	77	7	95	31	12	11	44	1.79
6686148--6686199	19	2.7	19	78	21	56	30	9	11	48	1.72
6686099--6686213	16	6.5	17	70	18	67	33	12	10	44	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141