genome.fa.s1.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  133  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42929235--42930305	210	5.1	210	87	6	1489	41	5	31	20	1.75
42929946--42929977	3	10.7	3	93	0	55	71	0	28	0	0.86
42928950--42930181	309	4.0	306	84	9	1605	40	5	31	22	1.77
42930159--42930199	3	13.7	3	90	10	66	68	2	29	0	1.03
42929326--42930305	105	9.2	105	87	7	1343	42	5	31	20	1.75
42930052--42930310	117	2.2	114	85	8	344	47	5	30	16	1.70
42938167--42938226	30	2.0	30	83	3	75	41	0	38	20	1.52
42938442--42938478	9	4.1	9	92	0	56	27	10	16	45	1.80
42938865--42938891	2	13.5	2	100	0	54	51	0	0	48	1.00
42961921--42961972	24	2.2	24	89	0	77	51	5	3	38	1.44
42979899--42979948	6	7.8	6	87	12	73	18	0	2	80	0.82
42984669--42984759	26	3.5	26	72	11	78	60	5	8	25	1.48
42984804--42984854	25	2.0	25	85	14	70	66	1	1	29	1.13
42986535--42986567	17	2.0	17	88	5	50	42	3	0	54	1.15
42994737--42994888	26	5.9	26	66	13	71	57	7	7	26	1.53
42994911--42994941	14	2.2	14	94	0	53	67	0	6	25	1.14
42994950--42995000	25	2.0	27	85	14	72	66	1	1	29	1.13
42996681--42996713	17	2.0	17	88	5	50	42	3	0	54	1.15
43003491--43003543	22	2.4	22	74	0	52	24	15	9	50	1.73
43010816--43010846	16	1.9	16	100	0	62	45	12	16	25	1.83
43016749--43016818	5	13.8	5	86	1	86	54	2	5	37	1.39
43017499--43017557	31	1.9	31	85	0	82	50	8	15	25	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43018369--43018438	30	2.2	32	80	16	85	58	5	1	34	1.31
43018481--43018555	30	2.6	29	85	6	89	54	9	4	32	1.51
43032930--43032975	8	5.8	8	97	0	83	41	23	0	34	1.55
43032928--43032975	4	12.0	4	81	0	60	41	25	0	33	1.55
43034107--43034207	51	2.0	51	96	0	184	24	10	21	42	1.85
43036245--43036412	84	2.0	84	100	0	336	40	19	8	32	1.81
43041002--43041072	31	2.4	31	83	6	85	21	4	11	63	1.44
43041519--43041581	17	3.6	17	77	10	65	61	6	0	31	1.21
43055328--43055498	91	1.9	91	86	4	247	27	18	7	46	1.75
43058135--43058169	17	2.1	17	100	0	70	31	22	11	34	1.90
43061613--43061652	18	2.2	19	86	4	55	82	0	17	0	0.67
43062361--43062393	16	2.1	16	100	0	66	15	18	6	60	1.54
43067676--43067787	57	2.0	57	90	0	179	37	27	12	22	1.90
43072534--43072560	13	2.1	13	100	0	54	48	7	14	29	1.71
43079706--43079848	73	1.9	74	82	1	180	46	11	16	25	1.80
43099077--43099104	2	14.0	2	100	0	56	50	0	0	50	1.00
43104646--43104795	54	2.8	54	95	1	266	52	18	0	29	1.46
43108172--43108270	9	10.9	9	91	1	126	40	28	10	21	1.85
43113479--43113513	15	2.3	15	90	0	52	31	11	0	57	1.34
43119540--43119586	15	3.1	16	75	9	53	25	6	2	65	1.27
43128591--43128641	26	2.0	26	84	7	68	25	5	7	60	1.47
43128532--43128783	135	1.9	135	99	0	495	37	10	5	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43128726--43128776	26	2.0	26	84	7	68	25	5	7	60	1.47
43128767--43128822	24	2.3	23	79	11	60	37	0	5	57	1.22
43129601--43129665	31	2.1	31	94	0	112	26	6	13	53	1.63
43134743--43134771	13	2.2	13	100	0	58	34	27	6	31	1.83
43139935--43139991	21	2.8	20	83	2	69	12	17	28	42	1.85
43140049--43140098	15	3.3	15	77	5	64	18	22	32	28	1.97
43140034--43140098	31	2.1	31	88	5	96	23	21	30	24	1.99
43142684--43142716	16	2.1	16	100	0	66	48	6	39	6	1.53
43149110--43149138	15	1.9	15	100	0	58	44	6	0	48	1.29
43149489--43149569	43	1.9	42	87	7	119	23	14	11	50	1.75
43150747--43150790	24	1.9	24	86	9	65	52	4	4	38	1.42
43154137--43154688	275	2.0	275	98	0	1068	27	14	16	41	1.88
43155174--43155473	154	2.0	154	97	0	575	27	13	15	44	1.83
43157559--43157588	16	1.9	16	93	6	53	60	0	0	40	0.97
43158970--43159154	101	1.8	102	88	5	286	24	17	27	30	1.97
43158970--43159152	51	3.6	50	77	9	165	25	17	27	30	1.97
43159158--43159250	46	2.1	43	82	9	107	25	18	23	32	1.97
43159380--43159411	16	2.0	16	93	0	55	59	0	15	25	1.36
43162771--43162805	18	1.9	18	88	11	54	8	5	5	80	1.03
43162783--43162810	13	2.2	13	100	0	56	7	7	7	78	1.09
43162999--43163140	29	4.8	30	80	4	146	38	2	23	34	1.70
43163043--43163141	30	3.3	30	83	4	128	42	3	22	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43163153--43163188	11	3.2	11	92	4	54	19	0	0	80	0.71
43163142--43163191	20	2.5	20	83	9	57	20	0	2	78	0.86
43163152--43163188	6	6.3	6	90	6	58	18	0	0	81	0.70
43163443--43163977	75	7.1	75	88	1	689	33	18	19	28	1.95
43164255--43164306	19	2.7	21	77	14	58	11	25	13	50	1.75
43167508--43167563	28	2.0	28	89	6	87	26	30	19	23	1.98
43175387--43175440	27	2.0	28	92	3	92	5	16	48	29	1.69
43175532--43175578	15	3.0	15	81	9	58	10	8	0	80	0.89
43175553--43175588	18	1.9	18	94	5	63	8	11	0	80	0.90
43175541--43175597	18	3.3	17	74	13	55	7	10	0	82	0.84
43175550--43175616	15	4.6	15	78	12	77	4	16	0	79	0.90
43177773--43179257	549	2.8	535	82	7	1649	36	11	15	35	1.85
43178779--43180239	501	3.0	478	82	8	1732	37	11	16	34	1.84
43180131--43181192	541	2.0	545	86	4	1522	36	11	16	35	1.84
43180930--43181484	277	2.0	278	99	0	1103	37	12	20	30	1.89
43184080--43184441	187	1.9	188	88	3	543	37	12	12	36	1.82
43183622--43184985	729	1.9	724	84	5	1814	36	11	15	35	1.84
43217004--43217092	45	1.9	47	84	8	121	22	21	16	39	1.92
43218703--43218746	20	2.2	20	95	0	79	31	2	20	45	1.64
43222105--43222137	6	5.5	6	100	0	66	84	0	0	15	0.61
43223649--43223731	28	3.0	29	73	19	86	68	1	6	24	1.19
43228275--43228332	17	3.4	17	87	0	80	12	29	37	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43236586--43236659	24	3.0	25	84	5	107	44	8	27	20	1.79
43236586--43236648	25	2.6	25	92	2	101	42	7	26	22	1.81
43236744--43236816	21	3.6	19	71	14	56	17	23	20	38	1.93
43244277--43244344	24	2.8	24	90	2	100	41	5	30	22	1.77
43246760--43246807	23	2.1	23	84	0	60	27	14	14	43	1.84
43260716--43260756	19	2.2	19	86	0	55	14	9	31	43	1.78
43262496--43262563	35	1.9	35	85	5	93	32	8	14	44	1.76
43265335--43265372	17	2.2	17	86	9	51	50	5	0	44	1.24
43270607--43270651	20	2.2	20	80	0	54	24	0	4	71	1.05
43273534--43275828	143	16.1	144	82	4	2557	36	10	15	37	1.81
43275679--43276003	181	1.8	180	87	4	494	36	9	14	39	1.78
43277417--43280009	143	18.1	142	76	8	1768	36	9	15	38	1.81
43277417--43280009	285	9.1	283	75	8	1600	36	9	15	38	1.81
43278536--43279199	229	3.0	212	78	10	681	35	9	14	39	1.80
43279942--43280075	66	2.0	66	83	0	169	41	8	18	31	1.80
43280008--43281898	142	13.0	142	69	11	751	38	8	14	38	1.77
43280008--43281898	143	13.0	141	68	11	723	38	8	14	38	1.77
43280008--43280654	144	4.5	143	81	4	691	37	8	14	39	1.77
43279375--43280994	638	2.5	640	81	6	1757	37	9	15	37	1.79
43280449--43280874	227	1.9	228	88	1	640	37	11	15	35	1.83
43280764--43281216	224	2.0	222	85	5	601	40	9	13	36	1.77
43281028--43281871	291	2.9	285	78	6	763	38	8	13	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43281986--43282157	86	2.0	86	82	4	213	34	9	18	38	1.82
43282070--43283727	142	11.6	143	77	6	1400	37	9	15	38	1.79
43283514--43283939	233	1.8	233	88	2	649	35	9	16	38	1.82
43283229--43284224	520	1.9	515	82	4	1245	35	9	15	38	1.81
43283747--43285242	142	10.5	140	77	7	1241	36	9	15	38	1.79
43285171--43285328	86	1.8	86	87	5	239	33	9	17	39	1.82
43285027--43285471	229	2.0	225	86	3	615	36	8	16	38	1.80
43285511--43287151	143	11.6	142	78	6	1463	37	9	14	37	1.80
43285241--43287154	285	6.8	285	78	5	1555	37	9	15	37	1.80
43286883--43287138	129	2.0	129	80	5	295	40	10	12	37	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141