genome.fa.s1.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  110  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35585558--35585801	91	2.7	90	85	3	296	33	10	19	36	1.86
35592115--35592183	27	2.6	27	90	4	104	40	7	1	50	1.39
35592247--35592353	27	4.0	27	95	0	160	26	28	29	15	1.96
35592640--35592680	3	13.7	3	100	0	82	34	0	0	65	0.93
35593205--35593249	18	2.5	18	96	0	81	28	4	51	15	1.63
35597122--35597271	38	4.3	32	74	23	92	0	33	0	66	0.97
35597183--35597293	18	6.1	18	73	15	86	0	32	0	65	1.05
35597214--35597293	34	2.8	28	73	24	76	0	32	1	66	1.00
35597172--35597262	38	2.4	38	96	0	164	1	36	0	62	1.02
35597254--35597296	22	1.9	23	85	4	61	0	30	2	67	1.03
35597216--35597297	28	2.7	30	73	19	80	0	32	1	65	1.00
35597449--35597508	27	2.2	26	91	8	102	50	0	6	43	1.28
35597451--35597516	27	2.4	27	90	7	89	48	1	7	42	1.40
35605035--35605100	33	2.0	33	93	0	114	16	25	13	43	1.85
35606893--35606930	18	2.1	19	85	5	51	42	15	15	26	1.87
35609533--35609598	33	2.0	33	93	0	114	15	24	15	45	1.84
35614958--35615217	127	2.0	127	94	1	459	45	13	11	29	1.79
35615956--35616169	41	5.3	41	85	2	254	21	19	21	37	1.94
35615956--35616169	81	2.6	81	86	3	288	21	19	21	37	1.94
35623265--35623299	6	5.8	6	87	12	54	14	2	0	82	0.77
35623878--35623940	31	2.0	32	96	3	119	31	9	15	42	1.79
35628984--35629035	6	8.7	6	86	0	59	26	0	55	17	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35628984--35629037	18	3.0	18	86	0	72	27	0	55	16	1.42
35643375--35643432	24	2.5	24	80	2	64	60	18	1	18	1.45
35644879--35645063	43	4.3	43	84	0	244	33	25	15	25	1.95
35651089--35651430	9	39.1	9	73	9	219	33	0	18	46	1.54
35651096--35651430	70	4.8	70	74	10	292	34	0	18	46	1.54
35651307--35651444	45	3.1	43	73	21	117	32	0	19	47	1.50
35652814--35653563	228	3.3	226	77	5	753	31	19	22	26	1.98
35652700--35653563	113	7.6	115	79	4	680	31	20	22	26	1.98
35653728--35653850	7	17.0	7	72	15	81	17	1	39	40	1.60
35653748--35653803	23	2.4	23	96	0	103	14	0	42	42	1.45
35653748--35653848	23	4.5	23	85	4	86	17	0	39	41	1.57
35654972--35655018	22	2.1	22	96	0	85	27	8	23	40	1.83
35654854--35664602	140	69.6	140	100	0	19498	25	10	21	42	1.85
35655112--35655158	22	2.1	22	96	0	85	27	8	23	40	1.83
35655252--35655298	22	2.1	22	96	0	85	27	8	23	40	1.83
35655392--35655438	22	2.1	22	96	0	85	27	8	23	40	1.83
35655532--35655578	22	2.1	22	96	0	85	27	8	23	40	1.83
35655672--35655718	22	2.1	22	96	0	85	27	8	23	40	1.83
35655812--35655858	22	2.1	22	96	0	85	27	8	23	40	1.83
35655952--35655998	22	2.1	22	96	0	85	27	8	23	40	1.83
35656092--35656138	22	2.1	22	96	0	85	27	8	23	40	1.83
35656232--35656278	22	2.1	22	96	0	85	27	8	23	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35656372--35656418	22	2.1	22	96	0	85	27	8	23	40	1.83
35656512--35656558	22	2.1	22	96	0	85	27	8	23	40	1.83
35656652--35656698	22	2.1	22	96	0	85	27	8	23	40	1.83
35656792--35656838	22	2.1	22	96	0	85	27	8	23	40	1.83
35656932--35656978	22	2.1	22	96	0	85	27	8	23	40	1.83
35657072--35657118	22	2.1	22	96	0	85	27	8	23	40	1.83
35657212--35657258	22	2.1	22	96	0	85	27	8	23	40	1.83
35657352--35657398	22	2.1	22	96	0	85	27	8	23	40	1.83
35657492--35657538	22	2.1	22	96	0	85	27	8	23	40	1.83
35657632--35657678	22	2.1	22	96	0	85	27	8	23	40	1.83
35657772--35657818	22	2.1	22	96	0	85	27	8	23	40	1.83
35657912--35657958	22	2.1	22	96	0	85	27	8	23	40	1.83
35658052--35658098	22	2.1	22	96	0	85	27	8	23	40	1.83
35658192--35658238	22	2.1	22	96	0	85	27	8	23	40	1.83
35658332--35658378	22	2.1	22	96	0	85	27	8	23	40	1.83
35658472--35658518	22	2.1	22	96	0	85	27	8	23	40	1.83
35658612--35658658	22	2.1	22	96	0	85	27	8	23	40	1.83
35658752--35658798	22	2.1	22	96	0	85	27	8	23	40	1.83
35658892--35658938	22	2.1	22	96	0	85	27	8	23	40	1.83
35659032--35659078	22	2.1	22	96	0	85	27	8	23	40	1.83
35659172--35659218	22	2.1	22	96	0	85	27	8	23	40	1.83
35659312--35659358	22	2.1	22	96	0	85	27	8	23	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35659452--35659498	22	2.1	22	96	0	85	27	8	23	40	1.83
35659592--35659638	22	2.1	22	96	0	85	27	8	23	40	1.83
35659732--35659778	22	2.1	22	96	0	85	27	8	23	40	1.83
35659872--35659918	22	2.1	22	96	0	85	27	8	23	40	1.83
35660012--35660058	22	2.1	22	96	0	85	27	8	23	40	1.83
35660152--35660198	22	2.1	22	96	0	85	27	8	23	40	1.83
35660292--35660338	22	2.1	22	96	0	85	27	8	23	40	1.83
35660432--35660478	22	2.1	22	96	0	85	27	8	23	40	1.83
35660572--35660618	22	2.1	22	96	0	85	27	8	23	40	1.83
35660712--35660758	22	2.1	22	96	0	85	27	8	23	40	1.83
35660852--35660898	22	2.1	22	96	0	85	27	8	23	40	1.83
35660992--35661038	22	2.1	22	96	0	85	27	8	23	40	1.83
35661132--35661178	22	2.1	22	96	0	85	27	8	23	40	1.83
35661272--35661318	22	2.1	22	96	0	85	27	8	23	40	1.83
35661412--35661458	22	2.1	22	96	0	85	27	8	23	40	1.83
35661552--35661598	22	2.1	22	96	0	85	27	8	23	40	1.83
35661692--35661738	22	2.1	22	96	0	85	27	8	23	40	1.83
35661832--35661878	22	2.1	22	96	0	85	27	8	23	40	1.83
35661972--35662018	22	2.1	22	96	0	85	27	8	23	40	1.83
35662112--35662158	22	2.1	22	96	0	85	27	8	23	40	1.83
35662252--35662298	22	2.1	22	96	0	85	27	8	23	40	1.83
35662392--35662438	22	2.1	22	96	0	85	27	8	23	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35662532--35662578	22	2.1	22	96	0	85	27	8	23	40	1.83
35662672--35662718	22	2.1	22	96	0	85	27	8	23	40	1.83
35662812--35662858	22	2.1	22	96	0	85	27	8	23	40	1.83
35662952--35662998	22	2.1	22	96	0	85	27	8	23	40	1.83
35663092--35663138	22	2.1	22	96	0	85	27	8	23	40	1.83
35663232--35663278	22	2.1	22	96	0	85	27	8	23	40	1.83
35663372--35663418	22	2.1	22	96	0	85	27	8	23	40	1.83
35663512--35663558	22	2.1	22	96	0	85	27	8	23	40	1.83
35663652--35663698	22	2.1	22	96	0	85	27	8	23	40	1.83
35663792--35663838	22	2.1	22	96	0	85	27	8	23	40	1.83
35663932--35663978	22	2.1	22	96	0	85	27	8	23	40	1.83
35664072--35664118	22	2.1	22	96	0	85	27	8	23	40	1.83
35664212--35664258	22	2.1	22	96	0	85	27	8	23	40	1.83
35664352--35664398	22	2.1	22	96	0	85	27	8	23	40	1.83
35664492--35664538	22	2.1	22	96	0	85	27	8	23	40	1.83
35664667--35664846	43	4.2	42	81	7	170	28	19	22	29	1.98
35664680--35665078	42	9.4	42	84	4	437	27	19	20	32	1.97
35664680--35665078	86	4.7	84	84	7	425	27	19	20	32	1.97
35666708--35666785	41	2.0	39	90	7	122	37	3	5	53	1.41
35667140--35667386	7	34.4	7	68	12	90	45	34	0	19	1.56
35667152--35667193	22	1.9	22	90	0	66	47	30	0	21	1.51
35667287--35667386	41	2.4	41	82	9	107	46	36	1	17	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35667286--35667386	48	2.1	48	81	7	116	45	36	0	16	1.55
35667709--35667795	40	2.2	40	80	0	102	28	22	17	31	1.97
35667888--35667979	40	2.3	40	79	3	96	23	18	22	34	1.96
35668434--35668462	15	1.9	15	100	0	58	27	0	13	58	1.36
35687598--35687670	20	3.7	20	80	14	87	35	23	32	8	1.84
35694087--35694205	60	2.0	60	98	0	229	26	10	31	32	1.89
35699103--35699176	36	2.0	37	97	2	141	40	8	16	35	1.78
35702677--35702813	20	7.3	20	64	14	85	33	5	13	48	1.64
35702686--35702820	17	7.4	17	64	14	63	33	4	13	48	1.62
35702681--35702829	37	4.0	37	93	0	253	34	5	14	46	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141