genome.fa.s1.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  64  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20872242--20872273	17	1.9	16	93	6	55	34	6	21	37	1.79
20874610--20874713	53	2.0	52	98	1	199	24	11	41	23	1.87
20875862--20875993	67	2.0	65	91	2	210	45	17	6	30	1.74
20880640--20880678	20	2.0	19	90	5	60	48	0	35	15	1.45
20884948--20884992	22	2.0	22	82	0	54	40	17	26	15	1.90
20889009--20889065	18	3.2	18	77	7	62	43	26	15	14	1.85
20893508--20893573	29	2.3	29	97	2	125	40	16	12	30	1.85
20895326--20895358	12	2.8	12	100	0	66	36	21	27	15	1.93
20896882--20896975	17	5.5	17	71	12	59	31	27	19	21	1.97
20896988--20897049	18	3.5	19	78	10	69	35	29	17	17	1.93
20897007--20897084	34	2.3	35	82	6	88	35	32	16	15	1.90
20897235--20897276	3	14.0	3	100	0	84	33	0	0	66	0.92
20906717--20906754	13	2.9	13	96	0	67	26	7	26	39	1.83
20907262--20907288	8	3.4	8	100	0	54	51	0	0	48	1.00
20907531--20907678	30	5.0	29	80	4	125	34	19	4	41	1.70
20907554--20907678	60	2.1	60	84	1	162	37	18	3	40	1.67
20907554--20907678	30	4.2	30	85	1	144	37	18	3	40	1.67
20907875--20907922	23	2.2	21	79	17	53	66	6	18	8	1.39
20907884--20907943	23	2.5	25	91	5	97	63	5	23	8	1.42
20908080--20908104	11	2.3	11	100	0	50	84	0	8	8	0.79
20908398--20908442	15	2.9	15	83	6	54	80	0	17	2	0.82
20909819--20909913	11	9.4	11	70	24	59	36	3	0	60	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20909806--20909921	38	3.2	38	80	19	167	33	2	0	63	1.08
20909849--20909927	30	2.6	31	95	2	142	37	2	0	59	1.11
20909895--20909933	20	2.0	20	89	0	60	35	2	0	61	1.10
20911116--20911301	50	3.7	50	78	5	189	23	25	21	29	1.99
20911123--20911309	100	1.9	99	80	1	221	21	26	20	30	1.98
20917398--20917445	18	2.7	18	96	0	87	39	12	12	35	1.81
20920947--20920980	16	2.2	15	94	5	59	23	2	23	50	1.63
20922324--20922390	34	1.9	35	87	3	100	32	8	11	46	1.72
20922339--20922378	20	2.0	20	85	0	53	30	10	10	50	1.69
20923213--20923254	19	2.3	18	87	4	57	50	0	26	23	1.50
20930195--20930240	21	2.2	21	100	0	92	21	26	15	36	1.93
20934241--20934269	14	2.0	15	93	6	51	58	0	13	27	1.36
20936589--20936646	24	2.4	24	80	8	64	41	17	17	24	1.90
20943074--20943215	23	6.2	23	82	0	176	24	22	23	29	1.99
20943075--20943211	46	3.0	46	87	0	211	23	22	24	29	1.99
20943074--20943215	69	2.1	69	86	0	194	24	22	23	29	1.99
20949354--20949425	35	2.1	35	94	0	126	26	20	22	30	1.98
20951049--20951090	20	2.1	20	100	0	84	14	4	28	52	1.62
20955632--20955672	2	20.5	2	94	0	73	0	46	0	53	1.00
20960168--20960281	37	3.1	36	84	2	147	35	27	14	22	1.94
20961543--20961596	25	2.1	26	89	3	83	25	11	12	50	1.74
20963173--20963201	8	3.6	8	100	0	58	24	0	10	65	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20970140--20970225	45	1.9	45	83	4	111	27	22	13	36	1.92
20971077--20971107	15	2.1	15	93	0	53	45	6	3	45	1.45
20976461--20976527	34	1.9	35	87	3	100	31	7	13	47	1.70
20976455--20976531	14	5.0	15	71	20	52	32	7	15	44	1.75
20981336--20981365	14	2.1	14	93	0	51	36	10	43	10	1.72
20981378--20981443	33	2.0	33	90	0	105	42	3	40	13	1.60
20982466--20982530	13	5.1	13	86	1	96	36	27	7	27	1.84
20982675--20982712	18	2.1	18	95	0	67	57	5	0	36	1.21
20986161--20986210	25	2.0	25	100	0	100	32	20	4	44	1.70
20986376--20986621	46	5.3	45	81	4	244	31	21	21	25	1.98
20989916--20989951	19	1.9	18	88	5	54	47	11	16	25	1.79
20995340--20995370	15	2.1	15	100	0	62	38	6	29	25	1.81
20999617--20999649	17	1.9	17	88	11	50	54	0	6	39	1.25
21001315--21001341	14	1.9	14	100	0	54	77	0	7	14	0.97
21002241--21002279	11	3.5	11	82	3	51	56	15	5	23	1.59
21003413--21003487	38	2.0	37	84	2	96	32	32	22	13	1.93
21010562--21010616	22	2.5	22	78	0	74	40	32	20	7	1.80
21015961--21016187	38	6.0	38	85	0	292	14	19	30	35	1.91
21016227--21016271	19	2.4	19	96	0	81	24	6	24	44	1.77
21019545--21019582	9	4.2	9	93	0	67	42	0	0	57	0.98
21027967--21028017	25	2.0	25	96	0	93	15	41	3	39	1.66
21028985--21029116	24	5.1	26	78	9	69	18	40	4	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21029001--21029116	24	4.8	24	81	6	128	17	41	5	36	1.72
21030843--21030888	23	2.0	23	100	0	92	34	13	26	26	1.92
21032761--21032795	15	2.3	15	90	5	52	31	8	0	60	1.27
21037172--21037206	16	2.2	16	89	0	52	34	20	2	42	1.66
21039822--21039882	14	4.7	13	80	11	72	77	4	4	13	1.10
21039818--21039901	26	3.2	26	81	6	91	76	7	4	11	1.15
21039860--21039897	19	2.1	18	90	5	58	86	2	5	5	0.76
21039822--21039909	14	6.5	14	77	18	71	77	6	4	11	1.11
21042044--21042225	88	2.1	88	81	2	204	28	21	26	23	1.99
21042190--21042293	44	2.4	44	80	6	113	26	21	24	27	1.99
21042230--21042854	131	4.8	131	91	3	904	31	21	22	24	1.98
21042850--21043661	218	3.7	218	90	0	1239	27	19	25	27	1.99
21042972--21043489	44	11.8	45	67	12	204	26	19	26	27	1.99
21043371--21043780	174	2.4	173	88	2	545	28	20	23	27	1.99
21042886--21043780	436	2.1	434	84	4	1149	27	19	24	27	1.99
21042886--21043787	218	4.1	218	86	2	700	27	19	24	27	1.99
21043449--21043834	174	2.2	174	93	0	657	27	20	24	27	1.99
21043887--21044150	100	2.6	100	90	1	413	33	22	18	25	1.97
21043884--21044142	50	5.2	50	70	3	207	33	22	19	24	1.97
21045855--21046254	202	2.0	202	98	0	773	27	8	7	57	1.55
21053326--21053365	20	2.0	20	90	0	62	27	10	12	50	1.72
21055606--21055646	18	2.2	20	86	8	59	70	0	24	4	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21058822--21059196	194	1.9	194	99	0	741	25	17	17	40	1.91
21060062--21060252	61	3.2	61	71	11	203	42	3	6	47	1.46
21060050--21060301	120	2.1	120	96	3	461	43	2	5	48	1.42
21060333--21060437	44	2.5	40	76	18	106	33	30	4	31	1.78
21060343--21060439	45	2.2	45	88	5	144	34	29	5	30	1.79
21060419--21060483	16	4.1	16	91	0	112	20	36	6	36	1.77
21062138--21062208	25	2.8	25	84	0	88	18	26	16	38	1.92
21063209--21063241	12	2.6	13	85	9	50	12	24	36	27	1.91
21078487--21078528	21	2.0	21	85	0	57	38	14	7	40	1.73
21081476--21081538	33	1.9	32	87	3	90	39	3	23	33	1.71
21081621--21081664	22	1.9	24	86	9	65	43	2	13	40	1.57
21084189--21084271	25	3.3	25	86	3	96	19	28	21	30	1.98
21087683--21087733	21	2.5	20	87	9	75	35	7	27	29	1.85
21088461--21088490	15	2.0	15	100	0	60	33	20	20	26	1.97
21093633--21093666	14	2.4	14	100	0	68	8	44	26	20	1.81
21097157--21097185	13	2.2	13	100	0	58	44	13	24	17	1.85
21099692--21099761	36	1.9	36	94	0	122	30	7	14	48	1.70
21101461--21101485	8	3.1	8	100	0	50	24	24	0	52	1.48
21104593--21104657	25	2.6	25	87	0	85	32	23	23	21	1.98
21106125--21106158	3	11.3	3	100	0	68	32	0	0	67	0.91
21106156--21106225	9	7.1	10	73	19	58	51	8	0	40	1.33
21106406--21106430	13	1.9	13	100	0	50	44	0	8	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21109871--21109909	18	2.2	17	86	13	60	76	5	7	10	1.13
21109853--21109923	31	2.3	31	90	0	106	73	5	8	12	1.24
21109873--21109909	19	1.9	19	100	0	74	75	5	8	10	1.17
21109895--21109921	12	2.2	12	100	0	54	77	7	0	14	0.97
21111061--21111124	32	2.0	32	88	11	96	59	9	21	9	1.57
21115509--21115567	29	2.0	30	86	3	84	49	13	6	30	1.68
21117396--21117421	13	2.0	13	100	0	52	53	0	0	46	1.00
21122689--21122817	61	2.1	62	97	1	242	55	18	10	16	1.69
21123933--21123962	14	2.1	14	93	0	51	43	6	13	36	1.70
21125258--21125311	26	2.1	26	96	0	99	50	5	3	40	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141