genome.fa.s1.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  109  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35323528--35323603	21	3.7	21	68	23	54	50	2	1	46	1.24
35330656--35330797	27	5.3	26	82	6	135	43	19	19	17	1.88
35330657--35330797	54	2.6	53	82	8	176	43	19	19	17	1.89
35332400--35332502	53	1.9	53	96	0	188	39	12	8	38	1.74
35333408--35333485	41	1.9	41	86	0	111	28	25	20	25	1.99
35336545--35336586	21	2.0	21	85	0	57	26	19	23	30	1.98
35340834--35340858	13	1.9	13	100	0	50	64	4	0	32	1.12
35344068--35344111	18	2.4	18	85	7	63	45	15	0	38	1.47
35344667--35344930	131	2.0	132	97	1	503	47	8	8	35	1.65
35345036--35345096	26	2.2	28	80	5	72	45	6	1	45	1.39
35346260--35346320	26	2.2	28	80	5	72	45	6	1	45	1.39
35347144--35347187	18	2.4	18	85	7	63	45	15	0	38	1.47
35352272--35352332	32	1.9	32	86	0	86	42	6	8	42	1.60
35352306--35352662	17	20.5	17	72	11	242	46	11	10	31	1.74
35352315--35352658	35	9.8	34	76	10	259	47	11	10	30	1.75
35352500--35352640	37	4.0	37	81	7	136	47	11	9	31	1.72
35352460--35352659	50	3.8	53	77	12	148	47	11	9	31	1.72
35352911--35352951	7	5.9	7	91	8	66	0	12	0	87	0.53
35352910--35352971	9	7.9	8	83	16	69	0	14	0	85	0.60
35353251--35353323	20	3.5	20	73	12	67	0	23	2	73	0.95
35353688--35353803	58	2.0	60	87	3	173	36	3	24	36	1.72
35353663--35353810	30	5.0	30	82	4	176	36	4	23	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35354301--35355339	76	13.7	76	93	3	1267	35	18	17	28	1.94
35356231--35356296	20	3.3	19	80	19	64	0	12	7	80	0.91
35356268--35356325	11	5.7	10	84	11	66	1	5	10	82	0.89
35356264--35356299	11	2.9	13	84	16	58	0	5	16	77	0.94
35356277--35356325	20	2.5	20	93	0	80	2	4	10	83	0.85
35363445--35363567	32	3.7	32	79	15	149	42	8	8	41	1.64
35363438--35363870	17	24.9	17	70	10	243	45	10	10	33	1.74
35363453--35363605	70	2.2	69	97	1	288	44	9	9	37	1.68
35363453--35363866	37	11.9	34	74	11	272	45	10	10	32	1.74
35363479--35363701	70	3.2	70	84	4	261	44	10	11	33	1.75
35364187--35364241	8	6.8	8	82	14	60	0	14	0	85	0.60
35364187--35364245	9	6.9	9	76	7	61	0	15	0	84	0.62
35364187--35364232	11	4.1	11	88	2	65	0	13	0	86	0.56
35364187--35364243	19	2.8	20	80	15	71	0	14	0	85	0.59
35364188--35364245	20	3.1	17	81	18	62	0	15	0	84	0.62
35364187--35364245	11	5.8	10	81	14	59	0	15	0	84	0.62
35364524--35364558	16	2.2	16	89	0	52	0	17	0	82	0.66
35364526--35364571	23	2.0	24	86	4	67	0	21	0	78	0.76
35364946--35365093	30	5.0	30	81	6	160	37	5	23	33	1.78
35364965--35365093	59	2.2	59	81	2	161	37	6	24	31	1.80
35370384--35370438	21	2.6	21	88	0	83	16	30	20	32	1.94
35392834--35393321	45	11.0	45	78	5	492	31	17	23	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35392834--35393437	90	6.9	90	79	4	518	31	17	22	27	1.97
35394601--35394644	24	1.9	22	86	9	61	18	2	34	45	1.62
35395284--35395335	27	2.0	27	84	3	70	28	1	9	59	1.40
35398491--35398523	12	2.8	12	82	17	50	15	12	48	24	1.78
35412051--35412124	21	3.4	21	75	14	78	31	45	8	14	1.74
35415073--35415255	98	1.9	97	93	1	312	30	25	18	26	1.98
35416635--35416697	3	21.0	3	96	0	117	33	1	0	65	1.03
35416785--35416824	5	7.4	5	86	13	53	25	2	0	72	0.97
35416785--35416824	16	2.4	16	88	12	55	25	2	0	72	0.97
35416785--35416824	11	3.7	10	87	12	53	25	2	0	72	0.97
35416906--35416950	22	1.9	22	82	13	54	40	4	4	51	1.42
35416951--35416997	21	2.1	23	85	14	64	25	0	6	68	1.13
35418873--35418917	19	2.4	19	85	7	56	26	20	8	44	1.80
35421646--35421670	6	4.2	6	100	0	50	68	0	16	16	1.22
35421672--35421711	17	2.4	17	86	0	53	75	0	22	2	0.93
35423007--35423673	45	14.8	45	85	1	879	32	13	21	33	1.92
35423007--35423877	135	6.6	135	84	4	1063	31	13	21	33	1.92
35423602--35423749	76	1.9	76	91	0	242	29	15	20	35	1.93
35423552--35423897	121	2.7	121	84	7	406	32	15	20	31	1.94
35423678--35423897	45	4.9	45	84	3	264	31	15	21	31	1.94
35423467--35423879	211	2.0	211	88	0	619	31	13	20	34	1.92
35423327--35423835	166	3.0	166	82	7	552	31	13	20	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35423673--35423897	90	2.5	90	83	2	299	32	15	20	30	1.94
35424002--35424102	44	2.3	44	82	3	114	28	18	20	31	1.97
35425517--35425564	3	16.0	3	100	0	96	33	0	0	66	0.92
35425651--35425685	5	6.6	5	87	12	52	25	0	0	74	0.82
35425651--35425685	16	2.2	16	90	10	54	25	0	0	74	0.82
35425651--35425685	11	3.3	10	92	8	52	25	0	0	74	0.82
35427339--35427404	34	1.9	34	84	6	89	57	0	3	39	1.14
35430919--35431275	178	2.0	179	99	0	707	40	11	8	38	1.73
35431437--35431496	10	5.8	10	74	14	50	58	0	1	40	1.08
35432178--35432234	25	2.3	25	96	0	105	63	0	3	33	1.12
35433899--35433949	11	4.8	11	79	13	54	37	1	0	60	1.08
35433918--35433951	18	2.0	17	88	11	52	35	0	0	64	0.94
35436098--35436156	18	3.3	18	81	9	75	38	0	1	59	1.08
35436098--35436163	28	2.5	26	87	7	89	37	0	1	60	1.06
35441440--35441493	28	1.9	28	100	0	108	22	27	14	35	1.93
35442922--35442977	21	2.7	21	91	0	94	25	8	37	28	1.86
35448445--35448493	18	2.7	18	75	15	55	32	4	2	61	1.26
35449521--35449735	106	2.0	106	92	1	360	30	17	18	33	1.94
35455426--35455466	15	2.7	15	85	10	57	41	4	0	53	1.22
35457326--35457376	22	2.4	22	87	6	70	19	29	39	11	1.87
35462952--35463006	28	2.0	28	85	0	74	49	14	14	21	1.79
35466108--35466153	6	7.7	6	90	0	74	50	45	2	2	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35469697--35469729	14	2.4	14	100	0	66	42	12	15	30	1.83
35471162--35471214	18	2.9	17	78	10	61	37	16	1	43	1.60
35475843--35475890	16	2.8	17	84	9	53	20	2	18	58	1.49
35478132--35478166	16	2.1	17	89	5	54	40	11	0	48	1.39
35481431--35481506	39	1.9	40	84	7	102	26	21	23	28	1.99
35488470--35488563	44	2.2	44	94	1	163	51	10	11	26	1.71
35494779--35494968	63	3.0	63	91	0	299	32	14	21	31	1.94
35499579--35499639	31	1.9	32	83	3	79	24	32	26	16	1.96
35501507--35501565	31	1.9	30	96	0	91	49	22	1	27	1.59
35522409--35522477	26	2.7	25	78	10	68	39	18	26	15	1.91
35528123--35528158	2	18.0	2	94	0	63	50	2	0	47	1.15
35529760--35529903	10	15.0	9	66	20	51	59	1	4	34	1.25
35530176--35530210	6	5.5	6	87	12	52	80	2	0	17	0.84
35530317--35530358	21	2.0	21	85	0	57	38	2	2	57	1.25
35530335--35530382	18	2.7	18	75	18	55	39	6	0	54	1.26
35530380--35530431	21	2.4	22	90	6	79	34	0	7	57	1.27
35530755--35530795	21	2.0	21	85	0	55	39	2	2	56	1.26
35531127--35531677	306	1.8	300	91	1	796	44	12	11	31	1.78
35531680--35532571	297	3.0	292	80	6	956	41	10	13	35	1.78
35536639--35536736	29	3.4	28	78	5	97	23	38	22	15	1.92
35536666--35536760	29	3.3	29	80	0	100	24	36	23	15	1.94
35538236--35538349	23	5.0	23	86	2	158	43	38	2	14	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35546554--35546589	2	18.0	2	88	0	54	0	44	0	55	0.99
35546554--35546595	8	5.2	8	91	0	57	2	40	0	57	1.12
35550052--35550118	19	3.5	19	80	10	82	26	25	26	20	1.99
35551044--35551080	3	12.3	3	94	0	65	64	0	32	2	1.07
35551750--35551811	29	2.2	28	82	5	79	59	1	3	35	1.23
35551951--35552011	28	2.3	27	83	13	74	67	1	3	27	1.16
35551984--35552034	23	2.3	22	80	12	52	60	0	7	31	1.25
35552511--35552574	24	2.8	23	73	15	60	35	1	1	60	1.15
35574387--35574428	20	2.1	20	82	8	50	61	9	4	23	1.45
35579841--35579877	15	2.4	16	86	13	51	29	10	13	45	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141