genome.fa.s1.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  119  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37894667--37894720	21	2.7	20	81	15	67	72	1	3	22	1.10
37896106--37896163	28	2.1	28	96	0	107	29	32	22	15	1.95
37897232--37897286	16	3.4	16	92	0	92	38	7	25	29	1.83
37899746--37899816	26	2.7	26	78	4	81	32	26	23	16	1.96
37899745--37899825	26	3.1	26	73	7	74	34	24	22	18	1.96
37899963--37900138	27	6.5	27	82	2	201	18	19	18	43	1.88
37899961--37900138	54	3.3	54	85	4	234	19	19	17	43	1.89
37899961--37900138	81	2.2	81	85	2	241	19	19	17	43	1.89
37905561--37905610	9	5.6	9	85	0	64	42	18	12	28	1.85
37905561--37905623	27	2.3	27	81	8	74	39	19	12	28	1.88
37905568--37905620	18	2.9	18	80	5	63	37	20	15	26	1.92
37905561--37905618	9	6.4	10	79	15	56	39	18	12	29	1.87
37905626--37905686	17	3.4	17	68	12	50	50	13	3	32	1.57
37905617--37905690	37	2.0	37	97	0	139	45	14	5	33	1.68
37905619--37905708	37	2.4	37	87	7	112	46	16	5	31	1.70
37916693--37916718	6	4.3	6	100	0	52	0	0	15	84	0.62
37921799--37921915	44	2.7	43	77	13	132	24	17	27	29	1.98
37925501--37925547	22	2.1	23	88	4	69	42	4	4	48	1.42
37926329--37926366	17	2.3	16	86	8	58	63	2	0	34	1.09
37926494--37926542	24	2.0	25	84	4	64	34	4	2	59	1.28
37926902--37926969	9	7.3	9	71	14	50	64	2	4	27	1.27
37926982--37927019	19	2.0	19	85	10	51	60	2	2	34	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37927055--37927098	20	2.2	20	88	8	63	61	4	2	31	1.28
37927529--37927710	19	9.3	18	73	17	109	34	2	3	59	1.28
37927550--37927729	10	18.4	10	68	17	85	34	1	3	60	1.22
37927686--37927751	28	2.3	30	81	5	82	30	4	1	63	1.23
37928671--37928744	31	2.5	29	82	4	85	24	12	14	48	1.78
37933844--37933896	11	4.7	11	77	9	54	62	0	37	0	0.96
37934097--37934261	82	2.0	83	98	1	323	23	0	16	60	1.36
37938213--37938266	27	2.0	27	100	0	108	33	25	7	33	1.84
37944880--37944932	23	2.3	24	84	15	76	30	26	18	24	1.98
37951259--37951303	23	2.0	23	86	4	65	24	4	13	57	1.54
37951248--37951295	23	2.1	24	84	7	64	20	6	14	58	1.58
37956183--37956240	26	2.2	26	87	6	82	43	13	15	27	1.85
37964204--37964409	27	7.7	26	78	10	157	19	16	19	43	1.88
37964233--37964409	54	3.3	51	81	7	192	18	15	20	45	1.85
37964233--37964409	81	2.2	81	88	0	264	18	15	20	45	1.85
37981289--37981368	38	2.1	38	88	0	115	36	28	18	16	1.93
37981289--37981368	19	4.2	20	73	9	69	36	28	18	16	1.93
37985914--37985948	15	2.3	15	85	0	52	25	11	8	54	1.64
38001469--38001511	18	2.4	18	92	7	70	48	0	0	51	1.00
38002901--38002954	24	2.3	22	76	17	54	38	1	3	55	1.28
38004180--38004302	64	1.9	65	86	1	176	39	8	8	44	1.64
38005744--38005770	5	5.4	5	100	0	54	81	0	0	18	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38010872--38011166	145	2.0	145	98	0	563	37	20	18	23	1.94
38015598--38015635	17	2.2	18	85	4	51	60	0	7	31	1.25
38020980--38021021	10	4.2	10	79	8	50	40	0	0	59	0.97
38020980--38021021	21	2.1	20	86	8	59	40	0	0	59	0.97
38035477--38035787	165	1.9	163	80	6	369	45	15	15	23	1.85
38041415--38041616	84	2.4	84	95	0	359	29	19	21	29	1.98
38047034--38047103	26	2.8	25	80	4	86	21	27	17	34	1.95
38049241--38049269	15	2.0	15	93	6	51	20	13	6	58	1.58
38051572--38051677	50	2.1	50	85	0	140	23	18	37	19	1.94
38054387--38054412	12	2.2	12	100	0	52	7	15	30	46	1.74
38054482--38055018	114	4.7	114	88	1	706	26	19	26	27	1.99
38054941--38055087	72	2.0	73	88	1	215	27	23	23	25	2.00
38054689--38055393	302	2.3	301	83	4	884	26	20	25	27	1.99
38054986--38055320	116	2.9	112	81	5	427	25	20	27	26	1.99
38055220--38055446	73	3.1	73	87	0	301	27	21	24	26	1.99
38055805--38055848	17	2.7	17	89	6	65	29	0	27	43	1.55
38065346--38065488	43	3.3	43	86	5	173	26	18	27	27	1.98
38065305--38065465	86	1.9	87	88	1	243	27	18	26	27	1.98
38065305--38065488	86	2.1	87	84	3	237	26	17	27	28	1.98
38076806--38076837	15	2.1	15	100	0	64	56	12	0	31	1.37
38080165--38080202	19	2.1	19	90	5	60	34	0	7	57	1.28
38080189--38080231	22	2.0	20	86	8	59	27	2	9	60	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38083664--38083701	18	2.2	18	90	4	60	34	5	5	55	1.45
38086791--38087025	50	4.9	48	77	8	201	22	30	19	27	1.98
38089983--38090034	26	2.0	26	85	7	70	38	17	3	40	1.68
38090165--38090222	25	2.3	25	84	0	80	32	24	20	22	1.98
38102135--38102304	86	2.0	85	82	6	204	47	12	4	34	1.63
38109070--38109102	17	2.0	17	88	5	50	30	0	6	63	1.18
38111823--38111850	5	5.6	5	100	0	56	21	0	0	78	0.75
38112632--38112664	16	2.1	16	94	0	57	21	12	3	63	1.41
38116384--38116423	20	2.0	20	100	0	80	30	25	15	30	1.95
38124492--38124908	45	9.3	45	74	4	360	29	19	23	26	1.98
38124492--38124960	89	5.2	89	91	1	672	30	19	23	26	1.98
38126813--38126845	16	2.1	16	94	0	57	21	12	3	63	1.41
38129026--38129059	15	2.1	17	89	10	54	58	0	0	41	0.98
38130456--38130501	23	2.0	23	100	0	92	30	8	30	30	1.87
38139101--38139224	36	3.6	34	71	12	94	33	29	14	23	1.94
38141237--38141294	30	1.9	31	85	3	82	65	27	1	5	1.23
38141235--38141309	30	2.5	30	76	6	80	68	25	1	5	1.19
38145029--38145094	25	2.5	25	82	7	69	21	21	24	33	1.97
38150024--38150080	29	2.0	29	92	0	96	36	12	12	38	1.80
38151510--38151552	17	2.4	19	81	14	56	30	0	13	55	1.39
38151920--38151949	9	3.3	9	100	0	60	40	0	0	60	0.97
38153764--38153826	30	2.0	32	84	6	85	36	3	0	60	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38154087--38154158	28	2.6	27	83	14	85	27	8	1	62	1.32
38155757--38155828	28	2.6	27	83	14	85	27	8	1	62	1.32
38155871--38155913	20	2.2	19	83	4	50	34	0	2	62	1.08
38155959--38156027	23	3.0	23	81	12	70	40	2	2	53	1.31
38155883--38156129	122	2.0	123	97	0	469	36	4	4	55	1.39
38163563--38163609	11	4.6	10	80	12	51	31	6	2	59	1.34
38163633--38163682	18	2.7	18	82	17	50	36	0	4	60	1.16
38169290--38169458	84	2.0	85	97	1	322	44	1	8	46	1.41
38175308--38175354	23	2.1	22	92	4	76	51	2	8	38	1.45
38177380--38177422	20	2.1	21	91	4	70	34	13	0	51	1.42
38177611--38177643	15	2.1	17	88	11	52	33	3	0	63	1.10
38185677--38185758	42	2.0	42	97	0	155	37	13	21	26	1.91
38191704--38191758	17	3.4	16	80	9	67	69	1	0	29	0.99
38196686--38196766	18	4.6	18	67	6	58	17	41	2	38	1.63
38204881--38204906	2	13.0	2	100	0	52	50	0	0	50	1.00
38205450--38205508	21	2.8	20	74	20	59	38	37	11	11	1.79
38206679--38206720	18	2.3	19	87	4	59	59	2	0	38	1.10
38209355--38209394	16	2.5	15	84	11	53	60	12	0	27	1.33
38209526--38209551	12	2.2	12	100	0	52	7	15	30	46	1.74
38209567--38209666	38	2.6	38	81	10	107	32	22	25	21	1.98
38209722--38210000	41	6.8	41	94	1	452	24	21	24	29	1.99
38209722--38210002	122	2.3	123	91	1	456	24	21	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38210378--38210409	14	2.2	15	94	5	57	31	0	31	37	1.58
38214593--38214707	53	2.2	53	96	0	212	24	20	13	40	1.89
38215541--38215667	43	3.0	43	95	0	218	21	17	34	26	1.95
38215944--38218046	846	2.5	846	96	0	3774	39	10	11	38	1.76
38218005--38218050	19	2.4	19	85	0	56	50	0	0	50	1.00
38220621--38220685	32	2.0	32	100	0	130	24	21	12	41	1.87
38221933--38222002	16	4.4	16	96	0	113	25	35	2	35	1.71
38223939--38223969	11	2.8	11	95	0	53	38	19	0	41	1.51
38225941--38225969	14	2.1	14	100	0	58	44	20	6	27	1.77
38226403--38226427	12	2.1	12	100	0	50	16	8	0	76	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141