genome.fa.s1.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  122  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38793346--38793383	17	2.3	17	86	4	51	65	2	0	31	1.06
38793890--38793915	3	8.7	3	100	0	52	69	0	30	0	0.89
38796816--38797100	142	2.0	143	99	0	563	37	18	8	35	1.81
38802817--38802913	45	2.2	44	88	5	142	31	3	29	35	1.73
38807616--38807721	53	2.0	53	94	0	185	60	15	17	6	1.55
38819647--38819716	24	2.9	24	83	8	97	15	40	2	41	1.62
38822752--38822789	12	3.2	12	85	3	51	13	15	2	68	1.32
38829994--38830037	3	14.7	3	100	0	88	31	0	0	68	0.90
38837936--38837977	17	2.4	17	84	11	50	35	4	9	50	1.56
38839418--38839452	15	2.2	16	90	5	54	37	0	2	60	1.12
38839426--38839477	26	2.0	26	82	17	65	48	0	1	50	1.12
38841113--38841171	9	6.4	9	86	3	73	32	1	1	64	1.13
38841112--38841174	19	3.4	19	84	4	83	33	1	1	63	1.13
38841113--38841184	37	1.9	37	85	0	99	36	1	2	59	1.20
38841328--38841386	25	2.4	25	85	0	73	25	3	3	67	1.21
38841328--38841399	9	8.4	8	74	17	56	25	2	2	69	1.15
38844921--38845124	102	2.0	102	88	1	302	37	13	19	30	1.90
38848871--38848933	19	3.4	19	77	4	65	36	1	3	58	1.23
38848871--38848921	9	5.6	9	81	4	57	33	1	1	62	1.17
38850124--38850165	17	2.5	17	77	14	50	26	2	0	71	0.98
38850131--38850196	25	2.8	24	77	11	64	25	3	3	68	1.19
38851144--38851471	107	3.1	107	83	2	412	31	18	18	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38854439--38854473	9	3.8	9	92	3	52	74	8	2	14	1.17
38854712--38854798	27	3.3	27	65	26	69	49	11	17	21	1.78
38858428--38858469	21	2.0	21	81	9	50	57	11	4	26	1.54
38860711--38860742	3	10.3	3	93	6	55	65	3	0	31	1.08
38861561--38861599	16	2.4	16	87	8	53	82	2	5	10	0.93
38862312--38862702	95	4.1	95	90	1	586	29	22	17	30	1.96
38862840--38863719	88	10.0	88	91	1	1361	25	23	24	27	2.00
38865778--38865817	11	3.2	13	82	17	57	0	25	0	75	0.81
38865778--38865827	27	2.0	24	84	11	64	2	24	0	74	0.93
38865836--38865886	16	3.3	15	78	21	52	5	0	9	84	0.78
38866608--38866646	4	9.5	4	83	5	51	48	0	23	28	1.51
38866602--38866654	25	2.1	26	85	3	72	50	0	20	28	1.48
38870379--38870435	28	2.1	28	86	3	80	12	29	19	38	1.88
38871333--38871360	14	2.0	14	100	0	56	42	7	7	42	1.59
38873894--38874088	106	1.8	106	84	2	266	25	18	21	34	1.96
38876417--38876651	110	2.2	109	87	6	336	37	16	17	29	1.91
38881158--38881255	42	2.3	42	82	3	117	26	26	15	31	1.96
38890167--38890200	17	2.1	16	88	5	50	79	2	0	17	0.86
38914960--38915042	10	8.9	9	69	15	53	63	1	2	32	1.15
38944465--38944521	30	1.9	30	92	0	96	33	22	10	33	1.88
38950871--38950918	22	2.2	22	85	7	62	43	2	2	52	1.24
38953722--38953862	54	2.6	54	86	2	183	29	21	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38960149--38961092	55	17.4	54	72	8	404	40	11	18	30	1.85
38960123--38960735	323	1.9	324	92	1	1032	43	10	16	29	1.82
38960910--38961393	54	8.9	54	73	9	292	38	13	19	28	1.90
38960974--38961347	162	2.3	162	80	5	398	38	13	18	29	1.90
38960910--38961400	108	4.5	108	75	5	336	38	13	19	28	1.89
38961073--38961364	162	1.8	162	85	1	415	39	14	17	29	1.88
38961738--38961769	13	2.3	15	89	10	50	56	21	6	15	1.62
38965294--38965639	31	11.2	30	77	3	230	25	13	36	24	1.91
38965323--38965488	60	2.7	60	83	3	181	24	12	37	24	1.90
38967337--38967388	24	2.2	24	89	0	77	51	7	1	38	1.42
38976334--38976522	105	1.8	105	94	0	333	26	7	26	38	1.84
38976661--38976721	18	3.4	18	97	0	113	16	37	21	24	1.93
38980024--38980054	9	3.4	9	90	0	53	25	12	22	38	1.90
38980107--38980136	9	3.3	9	90	0	51	46	13	10	30	1.75
38980885--38980910	5	5.2	5	100	0	52	19	19	19	42	1.90
38992448--38992473	3	8.7	3	100	0	52	0	0	65	34	0.93
38995560--38995619	29	2.1	29	81	6	68	36	1	20	41	1.62
39000795--39000829	18	1.9	18	88	0	52	28	2	42	25	1.69
39004289--39004323	2	17.5	2	93	0	61	48	0	0	51	1.00
39007645--39007715	28	2.6	28	88	6	101	40	12	1	45	1.51
39007787--39007877	27	3.4	27	89	0	137	26	28	28	16	1.97
39014094--39014134	3	13.3	3	89	5	64	63	4	0	31	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39014474--39014526	27	2.0	27	100	0	106	49	0	9	41	1.35
39014474--39014548	29	2.7	27	87	8	98	44	1	12	42	1.50
39022375--39022414	17	2.4	17	95	0	71	25	0	32	42	1.55
39023018--39023042	2	12.5	2	100	0	50	48	0	0	52	1.00
39024904--39024960	25	2.3	25	84	6	80	17	19	17	45	1.86
39027278--39027481	110	1.9	107	86	5	293	28	16	20	34	1.94
39027625--39027684	30	2.0	29	87	3	84	40	38	10	11	1.75
39029538--39029742	111	1.9	107	82	6	259	30	17	18	34	1.94
39030142--39030166	8	3.1	8	100	0	50	0	16	12	72	1.13
39034388--39034434	24	2.0	24	83	8	60	29	14	25	29	1.95
39034752--39035912	132	8.8	132	93	0	1822	30	17	23	27	1.97
39037280--39037311	3	11.0	3	93	6	57	34	0	0	65	0.93
39038012--39038215	110	1.9	107	86	5	293	28	16	20	34	1.94
39050341--39050372	15	2.0	17	88	11	50	34	25	15	25	1.95
39079502--39079535	15	2.1	16	89	10	52	55	0	0	44	0.99
39079504--39079563	24	2.5	24	81	13	61	55	0	1	43	1.10
39084628--39084706	37	2.1	37	97	0	149	30	6	39	24	1.80
39087130--39087164	7	5.0	7	100	0	70	14	28	14	42	1.84
39090916--39090965	16	3.1	16	80	13	57	38	0	0	62	0.96
39096818--39096849	16	2.0	16	93	0	55	75	0	15	9	1.05
39096843--39097380	210	2.5	208	80	9	620	37	13	15	33	1.86
39096855--39097380	110	4.9	104	77	10	332	37	14	15	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39097575--39098245	215	3.1	214	79	7	793	33	15	15	36	1.88
39097611--39098255	108	6.0	104	81	9	694	32	14	15	37	1.88
39098249--39098279	16	1.9	16	93	0	53	6	16	0	77	0.97
39106208--39106530	160	2.0	161	99	0	639	41	5	4	47	1.48
39111553--39111591	14	2.8	14	84	0	51	33	2	7	56	1.41
39117860--39117966	38	2.8	39	84	8	141	40	19	3	36	1.70
39117979--39118010	10	3.2	10	100	0	64	40	31	0	28	1.57
39126757--39126818	29	2.2	27	91	8	97	20	0	16	62	1.32
39129022--39129048	6	4.5	6	100	0	54	85	0	0	14	0.61
39142051--39142709	328	2.0	329	95	0	1176	29	14	19	36	1.91
39142932--39142965	13	2.6	13	85	0	50	41	38	0	20	1.53
39143081--39143139	9	6.6	9	92	0	91	23	8	27	40	1.83
39143073--39143139	18	3.7	18	91	0	107	25	7	26	40	1.82
39143392--39143464	26	2.9	24	82	11	83	16	27	21	34	1.95
39157448--39157477	2	15.0	2	100	0	60	50	0	0	50	1.00
39160601--39160633	3	11.0	3	93	0	57	36	0	30	33	1.58
39162275--39162299	11	2.3	11	100	0	50	72	8	0	20	1.10
39163776--39163815	20	2.0	20	100	0	80	30	35	10	25	1.88
39179451--39179512	31	2.0	31	100	0	124	35	12	3	48	1.58
39190081--39190114	15	2.3	15	89	0	50	29	17	5	47	1.71
39190490--39190540	25	2.0	25	88	0	75	19	17	15	47	1.83
39197571--39197648	35	2.2	36	86	4	113	52	17	2	26	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39197616--39197685	27	2.5	28	81	6	81	52	20	4	22	1.63
39198025--39198076	26	2.0	26	92	0	86	36	21	17	25	1.94
39198816--39198845	15	2.0	15	100	0	60	46	20	6	26	1.75
39199074--39199113	15	2.5	17	80	19	50	52	25	5	17	1.64
39199977--39200002	10	2.6	10	100	0	52	57	23	0	19	1.40
39215754--39215872	35	3.4	33	69	21	89	35	12	28	23	1.91
39215985--39216025	21	2.0	21	90	0	64	34	2	0	63	1.08
39225791--39225859	16	4.3	16	92	0	102	37	5	33	23	1.79
39235896--39235956	24	2.5	24	86	0	77	22	14	14	47	1.81
39238548--39238596	23	2.1	23	100	0	98	30	14	20	34	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141