genome.fa.s1.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  36  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12024924--12025074	50	3.0	50	100	0	302	19	7	21	50	1.73
12039268--12039413	71	2.1	71	92	2	240	41	16	14	28	1.87
12055826--12055901	36	2.1	36	92	0	125	34	30	6	28	1.83
12068389--12068505	62	1.9	59	83	8	146	41	4	4	49	1.42
12074571--12074625	27	2.0	27	89	6	85	63	5	1	29	1.27
12074571--12074625	14	4.1	13	84	9	74	63	5	1	29	1.27
12076297--12076538	129	1.9	129	91	1	396	29	21	19	29	1.98
12076335--12076518	44	4.3	43	69	10	133	30	22	17	28	1.97
12076607--12078932	87	26.8	87	95	1	3789	24	25	22	27	2.00
12078568--12078789	43	5.2	43	64	16	136	25	24	22	27	2.00
12080157--12080196	21	1.9	21	90	10	64	15	15	0	70	1.18
12080557--12080678	52	2.3	52	83	5	149	8	11	6	73	1.24
12080582--12080669	46	1.9	46	84	9	117	9	9	7	73	1.24
12085522--12085597	28	2.7	28	91	0	116	56	2	6	34	1.39
12085525--12085575	2	26.5	2	80	7	52	54	1	3	39	1.30
12085652--12085706	27	2.0	27	89	6	85	63	5	1	29	1.27
12085652--12085706	14	4.1	13	84	9	74	63	5	1	29	1.27
12087372--12087451	31	2.5	30	84	9	97	47	0	13	38	1.43
12088102--12088171	27	2.5	28	76	6	79	48	7	4	40	1.50
12088113--12088172	27	2.2	27	90	0	102	46	6	5	41	1.52
12091381--12091414	16	2.1	17	88	5	52	47	5	14	32	1.69
12092232--12092261	14	2.1	14	93	0	51	83	0	3	13	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12094241--12094286	6	7.7	6	100	0	92	50	0	17	32	1.47
12096013--12096042	15	2.1	15	93	6	53	46	26	13	13	1.80
12096013--12096042	7	4.1	7	91	8	51	46	26	13	13	1.80
12097559--12097598	12	3.2	13	86	13	57	70	0	30	0	0.88
12104711--12104741	16	1.9	16	93	0	53	3	19	19	58	1.53
12105656--12105683	13	2.2	13	100	0	56	46	17	0	35	1.49
12106605--12106763	43	3.7	42	83	4	176	30	28	18	22	1.97
12110589--12110662	27	2.6	29	74	10	71	40	1	2	55	1.22
12110595--12110647	15	3.7	15	75	14	58	39	0	3	56	1.17
12110606--12110659	27	2.0	27	85	7	74	38	1	1	57	1.20
12112351--12112385	17	2.1	17	100	0	70	34	37	22	5	1.78
12120520--12120624	31	3.1	33	80	13	92	42	0	3	53	1.19
12120530--12120591	11	5.5	11	70	14	54	38	0	1	59	1.07
12127236--12127270	2	17.5	2	100	0	70	51	0	0	48	1.00
12130772--12130849	30	2.6	29	76	11	79	25	24	3	46	1.70
12142704--12142747	14	3.1	14	83	3	52	70	4	0	25	1.06
12164263--12164419	41	3.8	41	87	0	215	17	21	28	32	1.96
12165240--12165362	24	5.3	24	69	6	67	26	8	20	45	1.78
12165227--12165323	22	4.3	22	66	7	59	24	13	16	45	1.83
12165223--12165361	69	2.0	69	90	0	215	25	10	18	45	1.81
12165300--12165424	62	2.0	61	87	4	180	22	10	22	44	1.83
12168362--12168454	32	2.9	32	96	0	168	51	17	3	27	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12168395--12168481	27	3.0	27	83	11	77	51	18	3	26	1.62
12168355--12168499	59	2.4	62	81	10	165	51	17	2	28	1.59
12175635--12175686	24	2.2	24	89	0	77	34	1	5	57	1.33
12190539--12190597	28	2.1	28	100	0	118	32	25	11	30	1.92
12190917--12191137	66	3.3	66	81	1	246	26	24	18	30	1.98
12196688--12196743	19	3.0	19	86	2	69	53	5	3	37	1.41
12198470--12198505	15	2.4	16	82	17	51	38	5	27	27	1.79
12208944--12209045	38	2.6	39	76	7	109	25	16	25	32	1.96
12210643--12210683	21	2.0	21	90	0	64	24	24	31	19	1.98
12211456--12211489	17	2.0	17	94	0	59	44	11	17	26	1.83
12212355--12212385	15	2.1	15	100	0	62	19	22	19	38	1.93
12215556--12215629	37	2.0	37	100	0	148	35	8	8	48	1.62
12216945--12217008	31	2.1	31	100	0	128	43	20	6	29	1.76
12220102--12220142	21	2.0	21	90	0	64	31	19	26	21	1.97
12220692--12220728	18	2.0	19	89	5	58	67	24	2	5	1.25
12226479--12226570	44	2.1	45	84	10	118	35	26	4	33	1.76
12226559--12226623	16	4.1	16	89	0	103	24	30	4	40	1.75
12226550--12226621	32	2.2	32	92	0	117	25	30	4	40	1.74
12229413--12229451	10	3.9	10	83	12	53	33	0	7	58	1.26
12229413--12229455	20	2.2	20	91	0	68	32	0	6	60	1.23
12230650--12230708	29	2.0	29	96	0	109	44	10	18	27	1.82
12242694--12242775	40	2.0	41	97	2	157	19	19	26	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12248471--12248515	20	2.3	20	84	3	56	46	6	0	46	1.29
12252007--12252034	6	4.7	6	100	0	56	17	14	35	32	1.90
12255395--12255456	26	2.3	27	75	2	72	56	8	12	22	1.62
12260159--12260229	23	3.1	23	70	11	74	26	35	14	23	1.93
12261598--12261642	22	1.9	25	82	13	60	37	2	0	60	1.09
12263869--12263915	8	5.3	9	82	12	62	42	0	6	51	1.27
12285227--12285257	15	2.1	15	93	0	53	90	0	9	0	0.46
12285853--12285915	18	3.4	18	82	4	90	61	3	4	30	1.32
12285867--12285933	27	2.5	26	76	11	73	67	1	4	26	1.19
12285932--12286007	38	2.0	39	82	7	93	59	2	5	32	1.34
12285853--12285932	9	9.0	9	68	6	56	63	2	5	28	1.28
12286191--12286236	21	2.2	20	84	7	56	28	4	6	60	1.40
12286268--12286559	27	11.8	26	68	19	151	36	1	2	58	1.21
12286273--12286580	73	4.2	73	100	0	616	35	1	2	60	1.21
12288953--12289017	31	2.1	32	82	2	78	30	15	12	41	1.84
12290112--12290166	15	3.7	15	82	0	56	58	3	5	32	1.38
12290127--12290166	18	2.2	18	86	0	53	55	2	5	37	1.35
12292593--12292755	51	3.3	51	77	10	194	30	18	15	36	1.92
12292613--12293158	45	11.9	45	74	9	224	28	20	17	33	1.95
12292608--12293156	96	5.9	96	77	9	339	29	20	17	32	1.95
12292720--12293059	89	3.8	89	78	6	326	28	22	18	31	1.97
12294041--12294100	17	3.3	18	76	9	59	0	16	1	81	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12298592--12298645	18	3.0	18	81	5	65	40	1	18	38	1.61
12301832--12301878	18	2.6	18	82	0	58	55	2	4	38	1.31
12301907--12301955	12	3.9	12	79	15	55	75	4	6	14	1.14
12302175--12302270	50	1.9	51	86	2	140	54	3	7	35	1.44
12305924--12305964	11	3.7	11	100	0	82	65	0	0	34	0.93
12310101--12310157	27	2.1	27	80	6	62	24	26	17	31	1.97
12312008--12312149	42	3.3	43	77	6	148	30	30	17	21	1.96
12313154--12313192	20	2.0	20	100	0	78	35	20	7	35	1.81
12315880--12315990	7	16.0	7	72	10	59	38	41	0	19	1.52
12315927--12315983	14	4.1	14	82	6	71	31	49	0	19	1.49
12317028--12317125	41	2.4	41	79	5	117	32	30	18	18	1.95
12321032--12321057	5	5.2	5	100	0	52	42	19	19	19	1.90
12321491--12321537	17	2.8	17	80	6	60	42	0	31	25	1.55
12321625--12321684	30	2.0	31	83	3	77	45	0	35	20	1.51
12321897--12321933	9	4.1	9	89	0	56	29	8	13	48	1.71
12322772--12322806	15	2.4	15	90	4	54	48	0	8	42	1.33
12326355--12326379	12	2.1	12	100	0	50	48	8	0	44	1.32
12330712--12331144	44	9.8	46	71	12	253	27	21	19	31	1.97
12330603--12331217	87	7.1	85	69	11	305	29	20	18	31	1.96
12330664--12331139	44	10.8	44	69	14	232	28	20	19	31	1.97
12330603--12331230	175	3.6	175	88	2	929	29	20	18	31	1.96
12331247--12331399	50	3.1	50	73	1	146	25	20	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12338796--12339359	306	1.8	306	98	0	1103	50	12	20	16	1.78
12340510--12340707	108	1.8	108	86	2	290	26	14	23	35	1.94
12341329--12341366	18	2.1	18	95	0	67	31	26	7	34	1.85
12342264--12342330	25	2.6	26	90	4	100	50	0	0	49	1.00
12346500--12346599	3	33.0	3	67	16	55	58	3	5	34	1.35
12346534--12346599	20	3.2	21	79	14	84	56	1	7	34	1.37
12346549--12346616	28	2.4	30	83	11	81	57	2	7	32	1.41
12349645--12349744	3	33.0	3	67	16	55	58	3	5	34	1.35
12349679--12349744	20	3.2	21	79	14	84	56	1	7	34	1.37
12349694--12349761	28	2.4	30	83	11	81	57	2	7	32	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141