genome.fa.s1.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  69  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22373950--22374002	26	2.0	26	96	0	97	28	16	11	43	1.83
22378261--22378302	15	2.9	15	92	3	68	23	14	16	45	1.84
22379437--22379473	9	4.1	9	92	0	65	29	10	13	45	1.77
22379737--22379820	43	1.9	44	87	2	125	44	4	38	13	1.64
22381559--22381629	23	3.1	23	75	16	60	46	7	1	45	1.39
22381614--22381643	14	2.1	14	93	0	51	53	0	3	43	1.17
22390395--22390467	28	2.7	27	81	8	78	65	1	0	32	1.01
22390411--22390467	27	2.1	28	86	3	80	70	0	0	29	0.88
22390512--22390574	24	2.6	25	80	7	85	57	0	1	41	1.08
22408285--22408423	33	4.2	33	88	1	199	39	32	11	16	1.84
22408293--22408420	65	2.0	65	88	1	193	38	31	12	17	1.87
22422457--22422645	50	3.7	51	82	6	186	28	21	27	23	1.99
22434131--22434174	19	2.2	20	84	12	63	18	36	38	6	1.77
22434136--22434175	19	2.1	19	95	0	71	17	37	40	5	1.72
22442511--22442704	50	3.9	49	81	2	210	28	21	28	21	1.99
22447282--22447382	45	2.2	45	85	0	139	14	4	23	56	1.58
22447297--22447395	45	2.2	45	85	0	126	19	4	18	58	1.54
22449309--22449390	26	3.2	26	63	27	66	24	14	28	32	1.94
22449392--22449486	45	2.1	45	88	3	138	30	16	18	33	1.94
22468621--22468969	132	2.6	132	87	3	488	27	23	16	32	1.96
22468996--22470663	88	19.0	88	91	0	2505	24	23	24	27	2.00
22480170--22480210	16	2.6	16	76	0	55	43	4	21	29	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22480170--22480231	32	1.9	32	83	0	79	45	4	20	29	1.72
22480555--22480590	5	7.2	5	100	0	72	41	19	19	19	1.90
22499940--22499985	9	5.4	9	80	15	53	71	0	0	28	0.86
22499937--22499985	17	2.9	17	87	3	64	69	0	0	30	0.89
22499938--22499985	8	5.9	8	80	4	51	68	0	0	31	0.90
22516681--22516718	19	2.0	19	90	10	60	15	15	0	68	1.22
22519130--22519183	27	2.0	27	100	0	108	22	18	7	51	1.70
22520596--22520642	21	2.2	21	82	10	60	53	6	10	29	1.60
22521264--22521314	6	8.5	6	95	0	93	15	50	1	31	1.55
22522564--22522588	7	3.6	7	100	0	50	52	0	0	48	1.00
22522812--22522861	17	3.0	17	77	11	59	54	4	2	40	1.31
22524175--22524227	12	4.4	12	80	0	61	30	26	3	39	1.74
22524175--22524227	18	2.9	18	82	0	70	30	26	3	39	1.74
22526021--22526047	6	4.5	6	100	0	54	14	14	33	37	1.88
22532914--22532965	22	2.4	22	90	0	86	42	13	23	21	1.88
22535041--22535087	25	2.0	25	83	8	62	61	4	2	31	1.27
22542878--22542911	17	1.9	18	88	5	52	41	0	23	35	1.55
22555892--22555958	23	3.0	23	75	16	70	47	0	1	50	1.10
22562207--22562252	18	2.6	17	83	10	56	28	10	23	36	1.89
22566224--22566315	45	2.1	45	83	6	116	21	15	10	52	1.73
22575416--22575446	4	7.8	4	100	0	62	25	0	0	74	0.82
22575602--22575646	23	2.0	22	91	4	72	31	2	0	66	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22575602--22575673	20	3.5	20	73	19	60	33	1	0	65	1.02
22575610--22575673	19	3.0	22	82	8	64	32	0	0	67	0.91
22575679--22575789	51	2.2	51	85	6	145	36	2	14	45	1.59
22583727--22583755	8	3.8	8	95	4	51	55	0	0	44	0.99
22586833--22586868	16	2.2	16	100	0	72	25	0	36	38	1.56
22586849--22586939	45	2.0	45	85	2	121	27	6	28	37	1.82
22597051--22597086	18	2.1	17	89	5	54	16	30	38	13	1.88
22597963--22597997	18	1.9	18	88	11	54	45	2	17	34	1.63
22599075--22601056	507	3.9	507	95	0	3475	28	17	25	28	1.98
22602503--22602548	19	2.3	20	96	3	85	47	17	10	23	1.79
22603479--22603512	14	2.4	14	90	5	50	29	0	2	67	1.05
22606338--22606471	47	2.8	48	84	2	173	29	17	17	34	1.94
22608369--22608399	16	1.9	16	100	0	62	54	0	32	12	1.38
22613559--22614024	54	8.8	54	73	8	289	27	18	14	39	1.89
22614254--22614297	23	1.9	23	90	0	70	20	20	18	40	1.91
22615502--22615543	21	2.0	20	82	13	50	40	0	2	57	1.12
22620302--22620343	11	3.9	11	78	6	50	73	11	7	7	1.23
22620303--22620356	21	2.6	21	85	5	74	74	9	9	7	1.23
22632002--22632131	43	3.0	43	76	14	151	30	26	20	22	1.98
22638362--22638422	28	2.2	28	96	0	113	27	6	24	40	1.80
22644569--22644623	9	6.2	9	91	4	76	21	10	27	40	1.87
22644569--22644623	18	3.1	18	86	5	85	21	10	27	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22646736--22646792	20	3.0	18	82	10	69	45	0	29	24	1.53
22646749--22646803	27	2.0	27	86	6	76	45	0	27	27	1.54
22646740--22646802	19	3.3	20	79	14	71	44	0	28	26	1.55
22660428--22660488	3	20.3	3	74	12	54	32	32	29	4	1.79
22660528--22660594	30	2.2	30	86	0	89	34	37	19	8	1.83
22660480--22660594	27	4.3	27	71	15	94	33	36	20	10	1.86
22660561--22660613	24	2.2	24	86	6	72	28	37	22	11	1.89
22660600--22660643	3	14.7	3	90	0	52	38	34	25	2	1.68
22660546--22660634	21	4.2	21	70	5	63	35	35	20	7	1.82
22669492--22669522	2	15.5	2	100	0	62	51	48	0	0	1.00
22671222--22671273	21	2.5	21	80	0	68	51	21	7	19	1.71
22671808--22671865	16	3.8	15	85	14	75	13	22	24	39	1.90
22681635--22681680	18	2.6	18	92	0	74	34	26	10	28	1.90
22682732--22682802	25	2.9	24	85	10	83	42	2	0	54	1.14
22682732--22682802	24	3.0	23	84	14	83	42	2	0	54	1.14
22684865--22685225	42	8.8	42	85	8	319	31	29	17	21	1.96
22684865--22685092	38	5.8	38	92	4	298	32	30	16	20	1.94
22685149--22685239	42	2.2	42	85	0	119	32	29	17	19	1.95
22685064--22685250	84	2.2	84	79	7	200	31	29	17	21	1.96
22689761--22690186	50	8.5	50	69	8	267	24	18	23	34	1.96
22689813--22690216	100	4.0	99	87	3	567	24	18	23	33	1.97
22689813--22690216	200	2.0	200	90	0	628	24	18	23	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22690291--22690432	44	3.2	44	76	4	151	27	17	19	35	1.94
22691747--22691796	7	7.0	7	82	15	59	14	16	0	70	1.18
22691747--22691797	13	3.5	15	82	15	63	13	15	0	70	1.17
22696613--22696640	14	2.0	14	100	0	56	28	21	21	28	1.99
22697914--22697948	8	4.1	8	92	7	52	71	2	0	25	1.00
22702501--22702560	14	4.3	14	71	14	52	38	36	1	23	1.65
22702944--22703004	7	8.6	7	78	3	68	50	27	1	19	1.57
22702944--22703004	21	2.9	21	82	2	77	50	27	1	19	1.57
22703285--22703334	22	2.3	21	82	3	64	44	30	0	26	1.55
22704000--22704136	41	3.3	40	76	7	125	35	24	19	19	1.95
22703969--22704140	82	2.1	81	80	9	188	33	25	19	21	1.97
22704201--22704310	40	2.8	39	77	4	112	21	21	20	36	1.95
22704832--22704876	20	2.2	20	88	7	65	73	6	6	13	1.24
22704832--22704882	19	2.5	19	84	9	57	74	5	7	11	1.21
22708185--22708282	22	4.8	20	66	21	62	59	18	13	9	1.60
22708174--22708290	60	2.0	60	100	0	234	57	17	12	11	1.65
22710781--22710829	26	1.9	25	88	12	73	40	6	14	38	1.71
22714112--22714163	18	2.8	18	86	11	70	50	0	25	25	1.50
22714112--22714159	19	2.5	19	90	6	71	52	0	25	22	1.48
22719175--22719260	45	1.9	45	85	0	118	22	19	12	45	1.84
22723163--22723199	17	2.1	18	85	14	51	51	13	5	29	1.63
22727042--22727727	44	15.6	43	77	6	599	30	25	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22727039--22727727	132	5.2	132	89	0	1047	30	25	15	29	1.95
22739438--22739472	15	2.3	15	90	0	52	65	8	2	22	1.34
22748373--22748413	19	2.2	19	100	0	82	36	14	12	36	1.84
22752212--22752281	16	4.4	16	94	0	113	37	2	34	25	1.71
22752263--22752351	44	2.0	44	91	4	142	28	4	31	35	1.77
22752464--22752592	56	2.3	56	78	9	136	51	4	0	42	1.28
22759145--22759202	30	2.0	29	93	3	98	36	10	15	37	1.82
22770761--22770847	37	2.4	37	82	5	106	18	10	29	41	1.84
22771828--22771940	54	2.1	54	80	6	122	24	17	29	28	1.97
22781409--22781527	23	5.1	23	74	4	121	42	12	19	26	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141