genome.fa.s1.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  72  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23507965--23508154	90	2.1	90	82	5	224	38	8	15	37	1.79
23518088--23518267	50	3.6	50	81	3	195	27	21	28	22	1.99
23527704--23527740	18	2.1	18	90	10	58	29	10	0	59	1.31
23537795--23537823	3	9.7	3	100	0	58	31	0	0	68	0.89
23542440--23542507	34	2.0	34	85	5	93	29	23	26	20	1.99
23544727--23544752	12	2.2	12	100	0	52	23	0	0	76	0.78
23550670--23550815	72	2.0	72	85	0	193	21	25	22	30	1.98
23555681--23555714	14	2.4	14	95	0	59	58	0	2	38	1.13
23556024--23556079	10	5.8	10	72	8	53	35	1	0	62	1.06
23556014--23556078	28	2.3	28	89	2	94	33	1	3	61	1.21
23556036--23556089	19	2.8	19	85	2	63	37	1	0	61	1.07
23556052--23556089	20	1.9	19	89	5	58	42	0	0	57	0.98
23556237--23556406	87	1.9	87	84	1	223	34	12	18	34	1.88
23562354--23562379	13	2.0	13	100	0	52	23	7	46	23	1.78
23562805--23563210	132	3.1	132	95	0	706	24	23	18	32	1.97
23563195--23563431	46	5.2	46	90	0	375	28	27	17	27	1.98
23564478--23564524	21	2.2	21	88	0	67	27	38	10	23	1.88
23564626--23564659	7	4.7	7	85	7	50	14	14	0	70	1.17
23565477--23565525	26	1.9	26	87	4	73	14	2	10	73	1.18
23571574--23571599	13	2.0	13	100	0	52	23	7	46	23	1.78
23581242--23581276	18	1.9	18	88	0	52	28	17	11	42	1.83
23586108--23586229	54	2.3	54	78	8	131	20	30	24	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23591805--23591872	34	2.0	34	91	0	109	44	20	5	29	1.75
23592905--23593168	40	6.6	40	79	4	255	31	17	29	21	1.96
23592908--23593168	80	3.3	79	80	2	297	31	16	30	21	1.96
23592905--23593168	120	2.2	120	78	4	291	31	17	29	21	1.96
23593607--23593642	15	2.5	14	82	8	54	25	0	2	72	0.98
23597606--23597774	91	1.9	91	97	0	320	34	15	18	31	1.92
23601645--23601690	7	6.6	7	94	0	83	54	0	2	43	1.12
23601702--23601739	12	3.2	12	96	0	67	73	0	10	15	1.09
23601702--23601746	24	2.0	22	86	8	63	75	0	11	13	1.05
23616582--23616699	44	2.7	44	80	6	141	48	4	22	25	1.68
23623160--23623184	9	2.8	9	100	0	50	32	24	0	44	1.54
23624034--23624066	13	2.5	13	95	0	57	30	0	12	57	1.35
23634325--23634353	11	2.6	11	100	0	58	37	20	24	17	1.93
23637178--23637288	22	5.0	22	72	12	102	28	20	18	32	1.96
23637295--23637334	15	2.7	15	85	11	55	37	35	12	15	1.85
23640775--23640799	12	2.1	12	100	0	50	28	0	24	48	1.52
23643398--23643458	28	2.2	28	91	2	97	32	24	21	21	1.98
23648566--23648647	40	2.0	40	85	4	110	30	19	7	42	1.78
23648808--23648848	19	2.1	20	86	4	57	26	2	2	68	1.15
23649396--23649433	18	2.1	18	100	0	76	10	15	26	47	1.78
23666507--23666536	16	1.9	15	93	6	51	76	3	0	20	0.92
23668251--23668373	44	2.8	44	77	0	111	32	17	17	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23668350--23668594	94	2.6	94	83	4	305	30	20	17	31	1.95
23668433--23668582	44	3.3	44	68	17	115	29	23	16	31	1.96
23668418--23668623	94	2.2	94	86	1	270	29	24	16	29	1.97
23675080--23675178	28	3.6	27	81	9	119	31	12	28	28	1.92
23676128--23676353	25	9.6	24	73	20	174	25	12	16	45	1.83
23676117--23676373	47	5.5	47	88	4	349	26	12	16	44	1.83
23676297--23676373	23	3.3	23	75	18	79	27	15	16	40	1.89
23679754--23679839	43	2.0	43	100	0	172	16	23	27	32	1.96
23683644--23683817	22	7.5	22	76	18	147	29	12	14	43	1.82
23683661--23683880	25	9.3	24	73	19	169	27	14	15	43	1.84
23683644--23683900	47	5.5	47	87	2	329	28	13	15	42	1.85
23689053--23689117	21	3.0	21	86	4	94	33	3	6	56	1.39
23697614--23697658	20	2.2	20	84	7	56	31	0	2	66	1.04
23702119--23702174	25	2.2	24	78	9	58	35	8	1	53	1.43
23703977--23704419	221	2.0	222	99	0	870	41	9	8	40	1.67
23714755--23714805	22	2.3	22	96	3	93	47	0	15	37	1.46
23719005--23719032	2	14.0	2	100	0	56	50	0	0	50	1.00
23724736--23724796	30	2.0	30	96	0	113	39	11	29	19	1.87
23741467--23741495	3	9.7	3	100	0	58	68	0	31	0	0.89
23742554--23742621	23	2.9	24	86	4	86	33	25	17	23	1.96
23746604--23746633	14	2.1	15	93	6	53	36	13	6	43	1.70
23748074--23748118	20	2.3	19	84	3	54	13	20	26	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23751996--23752052	27	2.1	27	100	0	114	33	15	3	47	1.63
23752787--23752842	27	2.1	27	83	6	69	58	7	3	30	1.42
23758186--23758228	22	2.0	22	86	9	61	20	6	18	53	1.67
23779195--23779220	1	26.0	1	100	0	52	0	0	0	100	0.00
23787295--23787462	85	2.0	83	95	2	300	42	10	14	33	1.79
23790501--23790548	24	2.0	24	87	4	69	52	2	2	43	1.24
23791891--23792045	77	2.0	77	100	0	310	27	12	14	45	1.81
23793441--23793495	23	2.4	23	100	0	110	30	29	14	25	1.95
23794794--23794840	21	2.2	22	84	3	60	38	21	10	29	1.87
23795065--23795142	38	2.1	38	90	0	120	33	19	15	32	1.93
23795109--23795174	24	2.8	24	85	0	78	36	22	18	22	1.95
23795295--23795396	53	1.9	53	90	4	161	23	33	24	18	1.97
23813429--23813489	31	2.0	31	86	0	86	36	3	1	59	1.24
23838597--23838742	43	3.4	43	78	10	172	23	16	33	26	1.96
23839040--23839082	22	2.0	22	95	0	77	41	27	20	9	1.83
23848082--23848111	15	2.0	15	100	0	60	40	20	13	26	1.89
23851548--23851737	51	3.7	51	87	2	283	31	16	22	30	1.95
23851544--23851737	102	1.9	102	95	0	352	31	15	22	30	1.95
23861969--23861997	6	4.8	6	100	0	58	68	13	0	17	1.20
23862538--23862580	21	2.0	21	90	0	68	44	23	9	23	1.82
23862676--23862719	16	2.8	15	80	12	61	54	0	0	45	0.99
23862676--23862720	17	2.8	17	83	6	58	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23863491--23863555	32	2.0	32	96	0	121	46	1	9	43	1.45
23864148--23864296	70	2.1	71	97	2	282	57	5	1	36	1.30
23864219--23864280	27	2.2	28	80	2	72	54	4	1	38	1.31
23864179--23864294	35	3.3	35	69	14	114	57	6	0	35	1.29
23865247--23865647	196	2.0	196	92	0	658	33	27	10	28	1.90
23868562--23868609	25	2.0	25	83	4	62	37	16	25	20	1.93
23868485--23868976	164	3.0	163	86	3	664	35	19	22	22	1.96
23869301--23869342	21	2.0	21	85	0	57	38	23	0	38	1.55
23871562--23871667	54	2.0	54	84	3	142	28	19	31	20	1.97
23874225--23874386	81	2.0	82	95	1	290	27	19	4	48	1.67
23874342--23874396	26	2.1	27	90	10	87	12	21	7	58	1.59
23876084--23876108	2	12.5	2	100	0	50	52	0	48	0	1.00
23878778--23878861	21	4.0	21	87	0	123	46	17	21	14	1.84
23881110--23881137	13	2.2	13	100	0	56	32	0	21	46	1.52
23883596--23883625	9	3.3	9	90	0	51	36	0	10	53	1.35
23888551--23888591	18	2.4	18	84	15	61	24	4	0	70	1.06
23893726--23893793	34	2.0	35	82	8	86	22	25	22	30	1.99
23903527--23903588	26	2.4	26	94	0	106	33	12	14	38	1.84
23911986--23912117	42	3.1	42	91	0	201	21	31	25	21	1.98
23914074--23914129	9	6.0	9	77	10	51	73	21	1	3	1.08
23919016--23919071	29	2.0	28	86	10	78	32	5	0	62	1.18
23935705--23935763	11	5.5	11	88	9	79	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23942156--23942186	16	1.9	16	93	0	53	61	9	16	12	1.56
23943498--23943971	23	20.2	23	77	5	441	41	17	12	28	1.86
23943538--23943982	93	4.8	92	87	5	506	42	16	12	28	1.85
23944340--23944387	15	3.1	15	82	8	53	47	18	0	33	1.49
23944891--23945003	43	2.6	43	81	10	124	30	30	18	20	1.96
23951819--23952676	94	9.1	94	97	0	1572	25	12	19	42	1.87
23959125--23959251	28	4.5	28	87	2	164	30	11	25	33	1.90
23959125--23959252	57	2.3	56	84	1	166	31	10	25	32	1.90
23959981--23960039	23	2.6	23	84	7	68	27	20	15	37	1.92
23960025--23960770	94	7.9	94	94	0	1215	26	12	19	42	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141