genome.fa.s1.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  101  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32845210--32845267	25	2.3	25	84	3	71	39	15	10	34	1.81
32845224--32845274	25	2.0	25	100	0	102	39	15	7	37	1.77
32846980--32847039	22	2.8	20	73	16	59	58	1	3	36	1.25
32853580--32853638	24	2.4	24	82	2	73	42	1	37	18	1.61
32855963--32856021	24	2.4	24	82	2	73	42	1	37	18	1.61
32860857--32860928	33	2.1	35	89	5	112	44	20	6	27	1.77
32873668--32873705	19	2.0	19	89	0	58	28	0	21	50	1.49
32881601--32881642	17	2.5	17	84	11	59	45	0	4	50	1.23
32889086--32889153	34	2.0	34	82	5	84	30	23	26	19	1.98
32889542--32889579	14	2.7	14	100	0	76	47	5	7	39	1.55
32895187--32895232	25	2.0	23	83	12	58	67	2	8	21	1.29
32899957--32899987	14	2.2	14	94	0	53	22	16	19	41	1.89
32901427--32901533	51	2.1	52	83	1	135	32	18	8	40	1.81
32902958--32903000	19	2.3	19	80	4	52	44	13	0	41	1.44
32906583--32906635	21	2.5	22	87	6	74	37	15	41	5	1.70
32910329--32910491	46	3.6	45	75	6	132	26	22	22	28	1.99
32911247--32911317	35	2.0	35	91	0	115	29	4	23	42	1.73
32913354--32913388	17	2.0	17	88	5	52	14	45	28	11	1.79
32928374--32928448	38	2.0	38	94	0	132	34	9	12	44	1.74
32928434--32928479	23	2.0	23	83	4	58	45	6	6	41	1.56
32947908--32947984	14	5.0	15	71	20	52	42	14	9	33	1.77
32947924--32947963	20	2.0	20	90	0	62	50	12	10	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32947912--32947978	34	1.9	35	90	3	109	46	13	8	31	1.74
32950105--32950162	29	2.0	29	100	0	116	34	17	24	24	1.96
32954159--32954190	15	2.2	15	94	5	57	31	3	0	65	1.08
32957924--32958417	241	2.1	241	93	0	855	33	17	11	36	1.87
32978228--32978261	17	2.1	17	88	5	52	58	0	20	20	1.39
32984627--32984722	44	2.2	45	84	5	124	23	21	21	32	1.98
32990521--32990566	24	1.9	24	81	0	56	41	8	10	39	1.71
32994321--32994403	30	2.8	30	84	0	103	22	25	22	28	1.99
32994356--32994421	30	2.2	30	83	5	80	27	21	21	30	1.98
33003979--33004044	16	4.2	16	68	12	57	24	10	42	22	1.85
33003965--33004054	30	2.9	30	75	9	83	26	13	35	24	1.92
33005552--33005576	12	2.1	12	100	0	50	32	8	16	44	1.76
33007329--33007493	14	11.5	15	71	11	96	21	17	28	32	1.96
33007336--33007517	29	6.4	29	72	7	99	21	19	27	31	1.97
33007459--33007493	15	2.4	14	90	4	52	20	8	31	40	1.82
33007336--33007517	85	2.2	85	84	3	242	21	19	27	31	1.97
33008147--33008171	13	1.9	13	100	0	50	48	8	16	28	1.74
33011856--33011902	18	2.6	19	80	12	55	59	0	0	40	0.97
33017436--33017771	82	4.1	81	82	3	386	46	13	12	27	1.79
33017436--33017777	164	2.1	164	83	2	436	46	13	12	26	1.79
33018710--33018763	2	27.0	2	100	0	108	50	0	0	50	1.00
33029904--33029936	17	1.9	17	93	0	57	24	9	9	57	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33033405--33033758	163	2.2	162	86	2	476	47	13	12	26	1.79
33033401--33033759	82	4.4	82	85	1	463	46	13	13	26	1.80
33037479--33037520	20	2.1	20	90	0	66	40	11	9	38	1.75
33047285--33047641	164	2.2	163	82	5	450	47	13	11	27	1.77
33047282--33047641	82	4.4	82	81	3	395	47	13	11	27	1.77
33047994--33048332	82	4.1	82	86	0	435	46	15	12	25	1.82
33048590--33048664	34	2.2	34	87	0	105	13	52	14	20	1.75
33049644--33049674	3	10.3	3	100	0	62	32	0	0	67	0.91
33049801--33049833	2	17.5	2	87	12	52	51	0	0	48	1.00
33053251--33053292	12	3.6	12	83	3	59	83	2	14	0	0.75
33053234--33053289	21	2.6	22	78	13	55	78	3	14	3	1.02
33054629--33054875	51	4.8	51	83	0	305	30	18	22	28	1.97
33054857--33054900	21	2.1	21	86	0	61	43	6	29	20	1.78
33054976--33055082	51	2.1	51	83	0	133	33	16	20	28	1.95
33055087--33055238	51	3.0	51	84	0	205	28	17	26	26	1.98
33054780--33055186	209	1.9	210	89	0	636	29	16	24	28	1.97
33054976--33055204	122	1.9	122	85	0	314	31	16	24	27	1.96
33055200--33055273	36	2.1	36	94	0	130	25	20	22	31	1.98
33055242--33055591	143	2.4	143	86	0	468	31	17	22	28	1.97
33055460--33055809	180	1.9	179	87	0	511	30	17	22	29	1.97
33056300--33056363	27	2.4	28	86	7	96	40	6	1	51	1.36
33056325--33056406	38	2.2	38	88	4	121	39	7	0	53	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33057981--33058011	5	6.2	5	100	0	62	61	19	0	19	1.35
33059441--33059474	17	2.0	17	100	0	68	41	11	29	17	1.85
33060484--33060543	27	2.2	27	87	0	93	38	35	3	23	1.71
33060470--33061026	43	12.8	45	81	6	504	42	29	0	26	1.61
33060470--33061026	22	25.7	22	84	5	638	42	29	0	26	1.61
33060470--33061026	86	6.4	86	84	6	664	42	29	0	26	1.61
33067995--33068459	125	3.7	125	89	2	670	29	23	16	30	1.96
33069524--33069571	25	1.9	25	100	0	96	20	22	18	37	1.94
33070282--33070340	30	1.9	31	89	3	93	47	1	20	30	1.60
33078416--33078525	41	2.7	41	81	1	141	20	29	17	32	1.96
33079392--33079421	12	2.5	12	94	0	51	23	40	30	6	1.80
33081856--33082331	124	3.8	124	89	5	717	29	15	21	33	1.95
33084946--33085725	29	27.2	29	68	26	304	27	0	26	45	1.58
33085032--33085077	22	2.2	20	88	11	67	26	0	28	45	1.54
33084969--33085572	80	7.7	79	76	15	408	28	0	24	46	1.57
33084946--33085725	109	6.9	109	75	16	501	27	0	26	45	1.58
33085155--33085231	22	3.5	22	73	18	79	27	1	23	48	1.59
33085048--33085464	184	2.2	183	82	13	505	28	0	24	46	1.57
33085036--33085355	155	2.1	154	92	0	532	27	0	25	46	1.58
33085296--33085341	22	2.2	20	88	11	67	26	0	28	45	1.54
33084946--33085648	264	2.7	264	96	1	1276	27	0	25	46	1.58
33085419--33085495	22	3.5	22	73	18	79	27	1	23	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33085270--33085726	154	2.9	157	79	10	497	26	0	27	45	1.59
33085495--33085639	23	5.8	24	71	14	107	28	0	26	44	1.60
33085632--33085673	6	6.7	6	91	8	66	14	0	52	33	1.42
33085632--33085673	13	3.3	13	96	3	77	14	0	52	33	1.42
33085632--33085671	19	2.0	20	95	4	73	15	0	55	30	1.41
33085577--33085733	84	1.9	85	91	1	262	25	0	31	42	1.55
33085664--33085752	23	3.6	23	73	16	88	26	0	26	46	1.53
33085577--33085748	29	6.2	28	69	18	110	25	0	31	42	1.55
33085748--33085860	25	4.7	25	70	12	94	41	12	0	45	1.48
33085757--33085867	35	3.2	35	64	14	93	44	12	0	42	1.48
33086962--33086986	7	3.6	7	100	0	50	60	12	0	28	1.32
33088001--33088057	22	2.5	22	94	2	96	38	0	35	26	1.57
33088209--33088316	42	2.6	42	89	0	162	17	29	27	25	1.97
33090657--33090689	6	5.3	6	92	7	57	15	0	69	15	1.19
33094192--33094223	15	2.1	15	94	5	55	21	0	3	75	0.95
33097443--33097468	12	2.2	12	100	0	52	23	53	0	23	1.46
33097870--33097897	14	2.0	14	100	0	56	35	21	28	14	1.92
33099881--33099923	16	2.5	19	79	20	51	37	4	6	51	1.50
33110162--33110230	25	2.7	25	81	2	84	47	2	10	39	1.52
33110226--33110274	18	2.7	18	93	0	80	48	22	0	28	1.50
33110248--33110373	24	5.0	24	76	15	130	43	31	0	24	1.55
33110226--33110329	18	5.8	18	70	24	67	46	29	0	24	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33110266--33110345	30	2.7	30	96	1	144	42	35	0	22	1.54
33110328--33110363	18	2.0	18	94	0	63	33	30	0	36	1.58
33110838--33110872	18	1.9	18	94	0	61	31	11	2	54	1.51
33110793--33110965	56	3.1	56	79	7	217	37	10	5	46	1.62
33110949--33110973	10	2.5	10	100	0	50	44	8	0	48	1.32
33114058--33114390	123	2.7	123	93	1	551	31	22	16	29	1.96
33116780--33116832	16	3.3	15	79	12	52	56	3	0	39	1.17
33116790--33116825	17	2.2	16	90	5	54	61	0	0	38	0.96
33118075--33118101	3	9.0	3	100	0	54	33	0	0	66	0.92
33119746--33120440	345	2.0	345	99	0	1381	33	22	14	29	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141