genome.fa.s1.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  129  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41357967--41358160	51	3.9	51	88	8	319	27	24	15	31	1.96
41357919--41358176	96	2.7	96	99	0	507	28	24	16	30	1.96
41358141--41358212	36	2.0	36	94	2	128	27	22	15	34	1.94
41362426--41362473	22	2.4	19	78	18	53	52	4	0	43	1.20
41362432--41362473	22	2.0	20	86	9	57	52	4	0	42	1.22
41365215--41365290	31	2.5	30	77	10	75	42	3	11	42	1.60
41370407--41370456	17	2.8	18	72	22	52	52	2	4	42	1.31
41375303--41375530	114	2.0	114	99	0	447	25	26	15	32	1.96
41389668--41389895	114	2.0	114	97	0	429	25	27	15	32	1.95
41392460--41392769	110	2.8	110	91	1	500	29	15	20	34	1.94
41395870--41395894	13	1.9	13	100	0	50	76	0	0	24	0.80
41396300--41396337	9	4.1	9	86	6	58	2	13	0	84	0.73
41397733--41397937	101	2.0	102	99	0	403	39	12	10	37	1.78
41402971--41403009	17	2.2	19	86	9	55	25	5	5	64	1.35
41421871--41421915	22	2.0	22	100	0	90	33	8	31	26	1.87
41434284--41434349	22	3.0	21	79	18	57	39	0	3	57	1.14
41440960--41441404	216	2.0	221	85	5	596	27	11	22	38	1.88
41452331--41452356	2	13.0	2	100	0	52	50	0	0	50	1.00
41453536--41453577	19	2.3	19	88	12	61	61	2	4	30	1.29
41453543--41453584	19	2.2	19	83	8	50	61	2	2	33	1.21
41454598--41454622	7	3.6	7	100	0	50	60	0	0	40	0.97
41455958--41456010	21	2.5	20	82	11	54	35	20	16	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41456029--41456197	93	1.8	93	79	5	198	25	23	17	33	1.96
41456498--41456572	9	8.0	9	69	8	51	56	5	0	38	1.22
41456497--41456542	9	4.7	10	79	15	60	63	2	0	34	1.07
41456511--41456572	19	3.3	18	84	8	70	53	6	0	40	1.27
41456583--41456612	14	2.1	15	93	6	53	70	3	0	26	1.03
41459556--41459600	10	4.4	10	81	15	56	48	0	0	51	1.00
41463489--41463677	93	2.0	94	98	1	371	28	15	12	42	1.84
41468383--41468416	18	1.9	17	88	5	50	76	0	20	2	0.92
41471387--41471854	233	2.0	234	99	0	929	38	9	11	40	1.73
41472907--41472960	20	2.6	21	82	5	65	55	0	1	42	1.10
41475094--41476088	154	6.5	154	92	1	1560	28	22	23	25	1.99
41480253--41480304	25	2.1	25	100	0	104	32	30	13	23	1.93
41485280--41485307	11	2.5	11	100	0	56	0	10	35	53	1.36
41487453--41487494	15	2.7	16	82	14	52	45	0	2	52	1.13
41487444--41487485	15	2.9	15	82	10	52	47	0	0	52	1.00
41487586--41487680	45	2.1	44	90	1	145	32	27	7	32	1.84
41487659--41487728	16	4.4	16	88	0	104	30	35	1	32	1.67
41487659--41487728	32	2.2	32	94	0	122	30	35	1	32	1.67
41490607--41490633	13	2.1	13	100	0	54	55	7	0	37	1.28
41490853--41490901	25	1.9	26	91	4	82	32	6	20	40	1.77
41494620--41494648	7	4.3	7	91	8	51	44	0	0	55	0.99
41497066--41497094	3	9.7	3	100	0	58	34	0	65	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41498603--41498703	31	3.3	30	68	6	96	53	4	9	31	1.55
41498583--41498703	60	2.0	61	98	1	235	51	4	9	33	1.57
41498593--41498686	29	3.2	29	67	5	89	48	4	9	37	1.55
41500816--41500935	60	2.0	60	81	1	143	39	8	15	37	1.77
41504953--41505029	27	2.9	27	90	3	120	16	24	38	19	1.92
41505250--41505287	19	2.0	19	89	0	58	50	7	5	36	1.54
41505545--41505582	19	2.0	19	89	0	58	36	5	7	50	1.54
41505803--41505879	27	2.9	28	90	3	115	19	38	24	16	1.92
41509719--41509806	43	2.0	43	91	8	144	57	6	2	32	1.37
41510292--41510354	26	2.2	28	83	10	76	66	1	0	31	1.01
41522877--41522910	16	2.2	15	89	5	50	55	14	0	29	1.40
41537405--41537477	34	2.1	34	100	0	146	35	17	15	31	1.91
41537557--41537654	31	3.2	30	72	16	83	27	8	9	55	1.60
41538376--41538421	19	2.4	19	82	17	60	52	8	0	39	1.33
41541871--41541908	19	2.0	19	85	10	51	31	0	0	68	0.90
41543382--41543440	1	59.0	1	100	0	118	0	0	100	0	0.00
41548330--41548364	6	5.8	6	100	0	70	17	17	17	48	1.81
41556426--41556480	26	2.2	25	83	3	65	40	3	3	52	1.36
41559846--41559950	54	1.9	54	80	3	122	47	5	11	35	1.63
41566316--41566397	40	2.0	40	97	0	155	42	9	6	41	1.62
41567786--41567854	27	2.6	27	92	0	120	31	20	28	18	1.96
41567863--41568004	19	7.3	19	78	12	121	31	0	14	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41567897--41567985	31	3.0	31	85	8	123	34	0	12	52	1.39
41567901--41567990	27	3.2	27	87	6	117	32	0	13	54	1.39
41567983--41568126	61	2.4	61	96	0	261	29	0	11	59	1.32
41568635--41568676	16	2.7	16	88	3	59	30	2	4	61	1.29
41569264--41569314	23	2.2	23	82	0	57	35	9	37	17	1.83
41569467--41569506	18	2.2	19	86	4	55	62	0	12	25	1.30
41569716--41569773	25	2.3	25	85	8	73	31	1	5	62	1.27
41569733--41569780	25	1.9	25	82	0	60	39	0	2	58	1.10
41569758--41569947	82	2.3	82	91	4	276	37	2	7	52	1.43
41569812--41569929	27	4.3	28	63	19	61	38	2	6	52	1.42
41569787--41569956	82	2.1	83	94	3	299	37	2	8	51	1.48
41574065--41574096	15	2.1	15	100	0	64	43	6	21	28	1.77
41580875--41580913	19	2.0	21	85	10	55	46	12	2	38	1.56
41585912--41585950	2	19.5	2	100	0	78	51	0	0	48	1.00
41594932--41595148	100	2.1	102	97	2	411	51	17	9	21	1.73
41597904--41597979	31	2.5	31	78	2	82	39	2	25	32	1.70
41598514--41598560	24	2.0	24	95	4	87	38	10	17	34	1.84
41605171--41605317	73	2.0	74	98	1	287	40	8	5	45	1.57
41610742--41611938	86	13.9	86	99	0	2358	20	17	29	32	1.96
41613709--41613742	11	3.1	11	95	0	59	29	29	14	26	1.95
41614289--41614327	17	2.1	20	86	13	57	25	5	0	69	1.09
41614591--41614652	31	2.0	31	90	6	99	29	8	17	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41614967--41614991	2	12.5	2	100	0	50	52	0	0	48	1.00
41616911--41616951	20	2.0	20	95	0	73	19	17	17	46	1.85
41616935--41617062	63	2.0	63	93	0	220	28	5	28	37	1.79
41630244--41630284	12	3.4	12	80	12	57	21	0	2	75	0.92
41630248--41630295	24	2.0	23	84	11	62	27	0	4	68	1.07
41630746--41630877	60	2.2	61	81	5	144	41	14	4	39	1.66
41650616--41650673	29	2.0	29	100	0	116	24	20	20	34	1.97
41665153--41665246	24	3.4	28	72	22	90	35	2	7	55	1.40
41665171--41665199	14	2.1	14	100	0	58	27	0	6	65	1.18
41665185--41665209	10	2.5	10	100	0	50	28	0	8	64	1.22
41666332--41666410	28	3.0	25	71	12	77	31	12	5	50	1.62
41666294--41666410	54	2.1	55	90	4	182	31	12	5	49	1.65
41666314--41666396	28	3.0	27	71	13	80	33	10	7	48	1.66
41672342--41672403	22	2.7	22	90	5	88	48	1	1	48	1.21
41672377--41672430	16	3.4	16	92	0	90	46	3	5	44	1.44
41673300--41673416	51	2.3	49	82	10	130	21	10	5	62	1.48
41673351--41673388	17	2.3	16	95	4	67	10	10	5	73	1.23
41673471--41673534	27	2.4	27	97	0	119	9	39	28	23	1.86
41673622--41673687	29	2.3	28	77	10	71	28	13	16	40	1.87
41677801--41678030	23	8.7	28	77	15	249	30	1	20	46	1.59
41680169--41680212	22	2.0	22	95	0	79	36	0	29	34	1.58
41680834--41680876	14	3.0	14	80	13	52	9	6	11	72	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41681903--41682003	45	2.2	45	92	0	166	59	16	7	15	1.59
41682883--41682915	4	8.2	4	93	0	57	27	0	3	69	1.03
41689024--41689121	46	2.2	46	94	1	171	43	19	3	33	1.66
41690365--41690389	11	2.3	11	100	0	50	92	0	8	0	0.40
41694148--41694185	10	3.9	10	86	6	51	76	2	0	21	0.91
41698360--41698424	14	4.5	14	70	14	51	35	1	0	63	1.04
41698377--41698444	31	2.2	31	84	5	84	35	2	1	60	1.21
41699149--41699315	59	2.7	60	77	17	159	62	3	3	29	1.29
41699275--41699327	23	2.3	24	84	12	76	62	1	0	35	1.06
41699320--41699367	19	2.5	19	72	3	51	75	4	0	20	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141