genome.fa.s1.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  48  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15240348--15240390	17	2.4	18	84	3	61	16	4	2	76	1.05
15259046--15259102	28	2.0	28	100	0	114	50	3	10	35	1.54
15270891--15270958	28	2.4	28	78	9	84	25	32	20	22	1.98
15272502--15272676	45	4.0	45	80	5	189	34	18	17	29	1.94
15272522--15272712	90	2.1	90	87	1	267	32	16	17	32	1.93
15281307--15281333	6	4.5	6	100	0	54	85	0	0	14	0.61
15287439--15287476	13	2.8	13	81	18	51	15	15	15	52	1.75
15288525--15288986	157	3.0	156	83	5	523	44	5	10	39	1.61
15289679--15289755	21	3.7	21	93	6	131	37	10	14	37	1.80
15289679--15289781	21	4.8	22	86	10	117	36	8	15	38	1.79
15289982--15290026	23	2.0	23	81	0	54	22	0	15	62	1.33
15295811--15295840	3	10.0	3	92	0	51	33	3	33	30	1.74
15298765--15299046	76	3.7	75	83	1	298	31	21	22	23	1.98
15298741--15299054	152	2.1	149	81	3	360	33	21	21	23	1.98
15304026--15304106	34	2.4	34	75	8	83	41	19	8	29	1.81
15305401--15305434	16	2.1	16	100	0	68	38	17	5	38	1.74
15324134--15324325	95	2.0	95	94	0	339	43	19	8	28	1.81
15331043--15331140	27	3.8	26	73	20	82	50	33	0	16	1.46
15331073--15331122	20	2.5	20	93	0	82	52	32	0	16	1.44
15331045--15331149	47	2.2	48	86	6	151	50	34	0	15	1.44
15331195--15331269	13	5.5	13	72	17	55	49	34	1	14	1.52
15331253--15331303	14	3.7	13	82	12	57	58	27	1	11	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15331510--15331551	20	2.1	20	95	0	75	57	30	0	11	1.35
15331446--15331552	34	3.1	32	77	13	99	57	27	1	14	1.48
15331447--15331611	76	2.2	75	82	1	195	53	29	2	15	1.54
15331506--15331611	20	5.5	20	68	20	64	50	32	1	15	1.54
15337996--15338049	20	2.7	20	82	0	72	38	16	25	18	1.92
15341309--15341375	34	2.0	34	93	0	116	44	13	14	26	1.83
15348884--15348929	19	2.4	19	85	7	58	45	8	21	23	1.80
15349348--15349383	17	2.1	17	89	0	54	44	22	16	16	1.86
15350761--15350802	20	2.1	20	82	8	50	66	2	7	23	1.28
15351134--15351199	3	22.0	3	100	0	132	66	0	0	33	0.92
15356393--15356422	2	15.0	2	92	0	51	50	3	0	46	1.18
15356535--15356742	36	5.6	36	69	14	134	25	20	22	31	1.98
15356563--15356705	39	3.7	39	74	10	132	26	18	20	34	1.96
15356528--15356746	75	2.9	75	86	1	294	25	21	21	31	1.98
15356860--15356914	24	2.2	24	87	3	74	54	3	20	21	1.59
15358960--15359010	17	3.0	17	76	0	57	37	21	9	31	1.86
15363716--15363763	22	2.3	22	85	7	64	77	6	2	14	1.06
15363715--15363764	21	2.5	19	81	12	55	74	6	2	18	1.12
15365176--15365238	27	2.3	27	97	0	117	22	34	31	11	1.89
15365287--15365335	19	2.4	21	86	6	66	18	2	6	73	1.14
15374444--15374468	1	25.0	1	100	0	50	100	0	0	0	0.00
15375537--15375588	27	2.0	27	88	3	79	73	0	13	13	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15383313--15383397	41	2.1	41	86	0	116	23	29	14	32	1.94
15385423--15385483	23	2.8	21	76	11	61	40	21	21	16	1.91
15386849--15386893	20	2.2	20	80	7	56	44	6	0	48	1.29
15389054--15389126	32	2.3	32	92	0	119	35	13	16	34	1.88
15391740--15391794	28	2.0	26	89	6	83	21	9	9	60	1.55
15391946--15391984	12	3.2	13	82	14	55	12	17	0	69	1.19
15402477--15402513	18	2.1	18	94	0	65	27	16	18	37	1.92
15402484--15402520	18	2.1	18	89	0	56	24	18	21	35	1.96
15406279--15406311	7	4.9	7	92	7	59	87	0	0	12	0.53
15406279--15406311	13	2.4	14	95	5	59	87	0	0	12	0.53
15406557--15406590	16	2.2	16	89	5	52	50	14	8	26	1.72
15413424--15413481	13	4.3	14	84	4	66	22	0	31	46	1.52
15413424--15413463	20	2.0	21	90	5	64	22	0	32	45	1.53
15413426--15413478	14	3.9	14	85	4	65	24	0	28	47	1.52
15413553--15413601	20	2.5	20	78	18	57	18	6	30	44	1.74
15418773--15418814	19	2.1	21	91	8	70	50	0	9	40	1.35
15419066--15419106	22	2.0	20	85	9	55	41	2	17	39	1.62
15437311--15437344	16	2.2	15	94	5	59	47	0	0	52	1.00
15446146--15446208	27	2.3	27	79	17	67	55	1	3	39	1.25
15451365--15451428	15	4.3	15	69	15	53	35	0	1	62	1.05
15451364--15451401	16	2.4	16	82	4	51	31	0	0	68	0.90
15462944--15463025	3	27.3	3	100	0	164	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15468183--15468221	20	2.0	20	94	0	69	41	17	30	10	1.83
15473765--15474012	50	4.8	50	84	3	280	21	28	22	27	1.99
15486706--15486814	38	3.2	37	68	28	114	35	10	14	39	1.80
15486680--15486830	64	2.4	64	98	0	293	35	9	13	40	1.79
15486710--15486811	33	3.2	33	66	20	88	36	10	14	38	1.81
15489861--15490053	50	3.7	50	88	5	244	24	22	29	23	1.99
15495072--15495109	19	2.0	19	100	0	76	26	10	36	26	1.89
15495216--15495275	30	2.0	30	96	0	111	40	18	15	26	1.90
15502758--15502828	34	2.2	33	85	9	94	33	5	9	50	1.59
15528985--15529060	19	4.0	19	89	0	116	39	13	7	39	1.73
15535560--15535626	9	7.4	9	90	6	91	38	25	10	25	1.87
15537223--15537263	20	2.0	20	85	0	55	21	19	24	34	1.97
15537232--15537279	20	2.4	20	85	0	60	22	14	20	41	1.89
15537281--15537373	40	2.3	39	78	8	98	20	22	20	36	1.95
15562850--15562882	16	2.1	16	100	0	66	33	30	0	36	1.58
15562853--15562888	16	2.3	16	90	4	56	27	33	0	38	1.57
15564416--15564442	5	5.4	5	100	0	54	18	0	0	81	0.69
15568962--15568997	15	2.5	14	86	8	54	13	5	11	69	1.34
15570150--15570192	19	2.3	19	91	0	68	60	6	0	32	1.23
15570583--15570657	17	4.5	17	67	29	63	41	1	5	52	1.33
15570634--15570774	58	2.4	60	80	10	148	41	3	5	48	1.44
15575539--15575596	30	1.9	31	92	3	100	8	12	10	68	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15578753--15578802	21	2.4	21	93	0	82	40	28	14	18	1.89
15585617--15585752	40	3.4	41	81	5	154	36	22	22	19	1.95
15585909--15586084	41	4.3	41	87	0	253	26	22	21	30	1.99
15585909--15586084	82	2.1	83	92	1	291	26	22	21	30	1.99
15586316--15586347	14	2.2	15	94	5	57	31	0	31	37	1.58
15586397--15586459	29	2.3	26	78	10	65	28	0	31	39	1.57
15587506--15587791	145	2.0	143	95	2	520	39	16	11	33	1.84
15589984--15590013	12	2.5	12	100	0	60	33	6	10	50	1.62
15590810--15590885	37	2.1	37	94	0	134	26	18	13	42	1.87
15594306--15594354	24	2.0	24	96	0	89	20	24	8	46	1.77
15600845--15600871	3	9.0	3	100	0	54	33	0	33	33	1.58
15605313--15605350	19	2.0	19	100	0	76	57	10	5	26	1.53
15611477--15611510	12	2.8	13	86	13	54	55	29	0	14	1.40
15612213--15612316	40	2.6	40	84	6	140	39	23	18	19	1.92
15612213--15612337	39	3.2	40	78	13	134	40	24	17	18	1.91
15621037--15621168	69	1.9	68	81	7	160	60	4	0	34	1.17
15621111--15621184	23	3.1	24	71	9	71	59	1	0	39	1.06
15621173--15621248	22	3.2	23	75	19	68	52	7	1	38	1.39
15626518--15626572	25	2.2	25	83	0	65	61	14	0	23	1.33
15627984--15628023	19	2.1	19	85	0	53	35	0	7	57	1.27
15630894--15630929	18	2.1	18	89	5	56	41	0	0	58	0.98
15634112--15634230	41	2.9	41	84	1	159	39	17	25	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15642514--15642544	12	2.6	12	94	0	53	35	0	45	19	1.51
15642585--15642632	23	2.1	23	88	3	71	27	20	6	45	1.75
15643682--15643708	13	2.1	13	100	0	54	51	0	11	37	1.37
15643709--15643775	35	1.9	35	93	0	116	44	11	5	37	1.66
15643796--15643935	9	16.0	9	78	14	141	46	20	0	33	1.51
15643797--15643935	34	4.0	35	80	12	128	46	19	0	33	1.50
15643796--15643935	43	3.2	43	81	9	167	46	20	0	33	1.51
15643819--15643935	36	3.3	36	85	7	159	46	19	0	34	1.51
15643984--15644015	7	4.6	7	96	0	55	34	9	15	40	1.80
15649379--15649516	66	2.1	65	85	8	181	42	17	25	15	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141