genome.fa.s1.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  62  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20195536--20195587	23	2.2	23	83	10	61	76	1	5	15	1.05
20196110--20196169	21	2.9	21	90	7	88	38	15	8	38	1.77
20197640--20197706	9	7.4	9	78	6	73	43	17	8	29	1.80
20198334--20198362	2	14.5	2	100	0	58	48	0	0	51	1.00
20208488--20208536	25	2.0	25	91	0	80	38	22	20	18	1.93
20208514--20208640	64	2.0	64	81	3	148	32	21	22	24	1.98
20212933--20212984	21	2.4	22	81	12	63	48	25	5	21	1.72
20214044--20214088	23	2.0	23	100	0	90	26	17	4	51	1.65
20217852--20217903	21	2.4	22	84	12	63	71	15	5	7	1.29
20217856--20217903	24	2.0	24	88	4	71	70	16	6	6	1.28
20218405--20218455	25	2.0	26	88	3	77	23	11	1	62	1.39
20218528--20218571	11	3.9	11	84	3	61	45	2	31	20	1.64
20219672--20219703	3	10.7	3	100	0	64	34	0	0	65	0.93
20224683--20224742	31	1.9	32	82	3	77	53	0	28	18	1.45
20232635--20232680	24	1.9	24	86	0	65	47	15	23	13	1.80
20240705--20241036	44	7.6	45	71	14	167	28	18	24	28	1.98
20240619--20241368	217	3.5	217	79	11	891	28	19	24	27	1.98
20240931--20241155	116	1.9	116	93	0	387	28	18	28	24	1.98
20241047--20241286	44	5.4	44	80	12	199	30	17	26	25	1.98
20241047--20241283	89	2.7	88	86	5	307	29	17	26	26	1.98
20241047--20241320	44	6.2	43	74	13	173	30	17	24	27	1.98
20243062--20243108	17	2.8	17	75	15	53	17	4	6	72	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20248230--20248290	32	1.9	32	93	3	106	34	21	1	42	1.63
20250685--20250809	41	3.0	41	84	4	162	18	27	18	36	1.94
20252455--20252641	51	3.7	50	75	11	166	26	16	24	33	1.95
20257916--20258047	51	2.6	51	80	2	158	23	15	26	34	1.95
20257864--20258047	102	1.8	102	89	4	293	22	16	27	32	1.96
20258056--20258144	45	2.0	45	93	0	151	25	15	24	33	1.95
20276649--20276903	39	6.5	39	84	8	308	30	3	20	44	1.69
20276651--20276903	117	2.2	117	86	3	348	30	3	20	45	1.69
20276647--20276904	78	3.3	78	88	4	369	31	3	20	44	1.69
20283626--20283665	19	2.0	20	90	4	64	15	5	12	67	1.38
20295505--20295778	116	2.4	116	88	3	406	38	13	25	22	1.91
20295523--20295807	29	9.8	29	83	2	302	38	14	25	21	1.91
20305356--20305389	16	2.2	15	89	5	50	52	2	0	44	1.16
20305613--20305646	16	2.2	15	89	5	50	52	2	0	44	1.16
20305271--20305659	125	3.1	125	64	19	332	43	8	6	41	1.62
20305230--20305745	257	2.0	258	99	0	1025	43	9	6	40	1.63
20321779--20321878	43	2.3	43	87	0	146	37	26	16	21	1.93
20330066--20330165	43	2.3	43	91	0	155	35	27	19	19	1.95
20335008--20335064	30	1.9	30	82	7	71	14	33	31	21	1.92
20342289--20342319	13	2.4	13	94	0	53	58	12	3	25	1.50
20345306--20345372	4	16.8	4	96	0	125	49	23	0	26	1.51
20353445--20353490	24	1.9	24	100	0	92	17	21	10	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20353545--20353640	50	1.9	50	89	0	147	30	12	29	28	1.93
20361545--20361594	22	2.3	22	85	0	64	20	10	8	62	1.52
20365450--20365477	8	3.5	8	100	0	56	57	10	0	32	1.33
20365496--20365538	21	2.1	20	82	4	50	65	2	0	32	1.06
20365495--20365546	18	2.8	18	85	5	59	63	1	0	34	1.06
20366349--20366377	14	2.1	14	100	0	58	34	31	0	34	1.58
20366910--20367072	42	3.9	42	92	0	272	30	28	20	20	1.97
20366908--20367090	42	4.3	42	90	2	269	33	27	20	19	1.96
20368140--20368468	86	3.8	85	86	5	394	41	17	8	32	1.80
20373967--20374026	10	5.7	11	83	15	65	43	5	0	51	1.23
20373967--20374029	19	3.1	19	80	19	74	41	4	0	53	1.22
20374179--20374258	40	2.0	40	95	0	142	33	8	31	26	1.87
20374585--20374635	15	3.5	15	72	17	54	47	37	1	13	1.55
20374736--20374896	41	3.9	41	88	4	227	31	24	21	22	1.98
20374976--20375070	40	2.4	40	81	0	127	22	21	21	35	1.96
20384321--20384362	22	2.0	21	85	4	57	64	2	14	19	1.39
20385391--20385434	22	2.0	22	81	0	52	29	0	25	45	1.54
20385433--20385479	23	2.0	23	84	8	60	38	0	27	34	1.57
20387123--20387159	9	4.1	9	89	0	56	32	10	10	45	1.74
20388722--20388757	18	2.0	18	94	0	63	72	8	11	8	1.29
20394079--20394119	21	1.9	22	85	5	57	46	12	0	41	1.41
20397102--20397149	20	2.3	21	78	7	53	16	14	8	60	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20399109--20399134	13	2.0	13	100	0	52	30	30	0	38	1.58
20414222--20414267	22	2.1	22	92	8	76	23	6	4	65	1.35
20414222--20414278	11	5.4	11	81	12	66	22	7	5	64	1.38
20414480--20414597	23	5.2	22	70	9	94	27	3	33	34	1.74
20414480--20414598	45	2.6	45	85	1	157	28	3	33	34	1.74
20415470--20415514	20	2.2	20	84	7	56	51	11	6	31	1.63
20418778--20418862	38	2.2	40	83	10	104	10	21	2	65	1.34
20421253--20421416	45	3.6	45	87	1	213	30	4	29	34	1.79
20422302--20422346	20	2.2	20	88	0	63	53	11	6	28	1.61
20425614--20425698	38	2.2	40	83	10	104	10	21	2	65	1.34
20428086--20428249	45	3.6	45	87	1	213	30	4	29	34	1.79
20429135--20429179	20	2.2	20	88	0	63	53	11	6	28	1.61
20432447--20432531	38	2.2	40	83	10	104	10	21	2	65	1.34
20434919--20435028	45	2.4	45	89	0	157	29	4	30	36	1.77
20434947--20435012	23	3.0	22	73	4	69	31	4	27	36	1.77
20434919--20435030	22	5.0	22	71	4	89	29	4	30	35	1.77
20435076--20435120	20	2.2	20	84	7	56	51	11	6	31	1.63
20438429--20438811	191	2.0	192	98	0	750	26	11	14	48	1.77
20451183--20451215	6	5.7	6	85	7	50	51	12	18	18	1.76
20463137--20463263	40	3.3	39	83	8	143	30	22	17	29	1.96
20463169--20463264	40	2.5	40	91	3	151	30	23	15	30	1.96
20463137--20463280	39	3.7	39	84	5	166	32	22	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20463169--20463298	40	3.3	40	84	4	122	35	21	13	29	1.92
20464364--20464404	21	1.9	22	90	5	66	41	0	0	58	0.98
20464916--20464956	22	1.9	22	85	5	57	56	2	2	39	1.26
20466758--20466888	43	3.0	43	93	0	208	29	26	21	22	1.99
20467196--20467253	21	2.8	21	86	0	71	8	44	15	31	1.76
20467240--20467404	65	2.5	64	83	7	190	13	28	18	38	1.90
20478314--20478659	113	3.1	113	97	1	631	28	22	22	26	1.99
20478697--20478786	40	2.2	40	80	5	101	22	22	21	34	1.97
20483439--20483526	27	3.3	27	82	9	108	35	10	28	26	1.89
20486284--20486652	201	1.8	201	98	0	711	29	10	18	41	1.84
20487768--20487799	15	2.1	15	94	0	55	18	9	6	65	1.42
20495716--20495868	69	2.2	69	97	0	288	39	19	19	21	1.93
20496008--20496060	27	2.0	27	92	0	88	37	15	24	22	1.92
20498446--20498567	42	2.9	43	82	11	169	32	27	19	19	1.96
20502412--20502509	27	3.6	27	73	2	90	33	32	19	14	1.92
20502927--20502957	9	3.4	9	90	0	53	25	12	22	38	1.90
20503010--20503046	9	4.1	9	92	0	65	45	13	10	29	1.77
20504349--20504394	7	6.6	7	87	0	65	45	32	0	21	1.52
20504356--20504394	14	2.8	14	100	0	78	46	33	0	20	1.51
20513070--20513130	30	2.0	30	90	6	97	19	45	0	34	1.51
20513075--20513140	30	2.2	30	83	8	80	18	53	0	28	1.45
20513228--20513265	19	2.1	19	95	5	69	26	34	0	39	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20514596--20514633	2	19.0	2	94	0	67	47	0	2	50	1.15
20515331--20515400	31	2.4	31	83	7	83	31	8	10	50	1.66
20522997--20523131	48	2.8	47	80	4	144	31	17	17	34	1.93
20526766--20526822	28	2.0	28	93	0	96	29	12	31	26	1.92
20530692--20530793	43	2.4	42	83	3	116	28	11	27	32	1.92
20531510--20531577	35	2.0	34	82	2	82	30	8	14	45	1.76
20535611--20535765	54	2.9	52	77	13	161	37	14	21	25	1.92
20537793--20537903	43	2.6	43	78	2	134	42	19	17	20	1.89
20541049--20542159	555	2.0	555	100	0	2222	35	19	13	30	1.91
20546871--20546895	5	5.0	5	100	0	50	60	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141