genome.fa.s1.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  131  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42000099--42000146	25	1.9	25	82	0	60	50	4	0	45	1.21
42000411--42000454	19	2.6	16	82	10	52	29	20	4	45	1.71
42005566--42005646	29	2.7	30	84	5	101	50	13	3	32	1.59
42007662--42007705	23	1.9	23	95	0	79	20	13	11	54	1.69
42007662--42007706	12	3.8	13	77	19	53	22	13	11	53	1.71
42024721--42024761	7	5.9	7	100	0	82	73	0	0	26	0.84
42035520--42035576	22	2.7	20	79	12	69	59	19	10	10	1.59
42037922--42037948	2	13.5	2	100	0	54	48	0	0	51	1.00
42039259--42039348	43	2.1	44	95	2	164	28	27	13	30	1.94
42040328--42040371	21	2.1	21	86	0	61	40	18	15	25	1.90
42042105--42042154	23	2.0	25	85	11	68	48	0	2	50	1.12
42042609--42042668	25	2.5	24	86	8	77	65	6	5	23	1.37
42054962--42054998	17	2.1	19	90	10	60	37	2	10	48	1.52
42057567--42057597	1	31.0	1	100	0	62	100	0	0	0	0.00
42063748--42063793	22	2.0	23	83	4	58	39	8	4	47	1.54
42063993--42064285	99	3.0	99	81	3	365	43	11	11	33	1.77
42070540--42070598	26	2.3	26	82	2	75	49	3	13	33	1.59
42071078--42071104	6	4.5	6	100	0	54	14	0	0	85	0.61
42078843--42078890	25	2.0	25	84	8	64	12	8	4	75	1.18
42082888--42083079	95	2.0	96	98	1	377	46	7	7	38	1.59
42096849--42096906	22	2.5	23	83	5	64	50	1	3	44	1.29
42097974--42098119	51	2.8	50	75	14	136	36	17	6	39	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42112878--42112923	24	1.9	24	82	8	58	23	23	13	39	1.90
42122577--42122631	30	2.0	28	86	13	78	34	12	32	20	1.90
42129502--42129577	35	2.2	35	86	6	102	50	5	0	44	1.24
42131816--42131840	13	1.9	13	100	0	50	84	0	0	16	0.63
42134539--42134594	14	4.1	14	72	9	62	32	5	0	62	1.18
42134553--42134602	26	1.9	26	100	0	100	32	12	0	56	1.36
42134555--42134614	26	2.3	26	91	0	93	36	11	0	51	1.38
42138235--42138273	14	2.8	14	84	0	51	7	20	5	66	1.36
42140313--42140351	14	2.8	14	80	11	53	46	5	10	38	1.60
42144320--42144392	36	2.0	36	94	0	128	38	12	9	39	1.76
42144551--42144602	27	1.9	27	96	0	95	34	23	7	34	1.83
42146667--42146812	71	2.0	72	98	1	285	56	4	7	32	1.46
42147025--42147063	7	5.4	7	96	3	69	41	0	0	58	0.98
42152999--42153043	24	2.0	23	82	8	56	26	8	6	57	1.54
42163951--42164204	80	3.1	80	66	24	229	43	8	5	42	1.59
42169210--42169280	25	2.9	24	78	13	65	45	2	0	52	1.15
42170502--42170731	113	2.0	114	99	0	453	35	4	10	50	1.57
42178148--42178212	29	2.2	28	82	15	71	36	1	1	60	1.16
42179089--42179115	10	2.7	10	100	0	54	11	18	33	37	1.86
42179170--42179874	142	5.0	140	88	2	1031	25	14	16	43	1.86
42193287--42193316	2	15.0	2	100	0	60	50	0	0	50	1.00
42204118--42204160	18	2.4	18	84	7	61	46	0	2	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42223437--42223462	3	8.7	3	100	0	52	34	0	34	30	1.58
42231482--42231506	2	12.5	2	100	0	50	48	0	0	52	1.00
42233223--42233261	19	2.1	19	85	9	53	46	10	7	35	1.67
42237630--42237662	6	5.5	6	92	0	57	33	15	21	30	1.94
42237631--42237668	18	2.1	18	90	0	58	36	13	26	23	1.91
42240372--42240417	18	2.6	18	89	0	74	34	0	15	50	1.44
42240359--42240423	10	6.7	10	77	7	62	40	0	10	49	1.38
42240359--42240443	14	5.9	14	83	8	82	40	1	11	47	1.48
42240359--42240425	4	16.8	4	87	0	62	40	0	10	49	1.37
42242659--42242715	30	1.9	29	86	10	80	31	0	7	61	1.23
42243968--42244001	18	1.9	18	88	5	52	29	0	5	64	1.17
42244084--42244166	27	3.0	27	80	13	82	63	1	0	34	1.02
42244125--42244163	19	2.0	20	85	9	55	66	0	0	33	0.92
42254185--42254230	22	2.1	22	84	8	58	39	2	2	56	1.24
42254197--42254284	39	2.1	43	87	10	130	35	2	1	61	1.16
42254203--42254256	28	1.9	28	81	7	65	35	3	0	61	1.14
42261703--42261730	14	2.0	14	100	0	56	50	7	14	28	1.69
42264544--42264585	19	2.3	19	80	16	52	30	2	4	61	1.29
42264682--42264747	31	2.1	31	91	0	105	51	13	7	27	1.68
42267694--42267826	66	2.0	66	100	0	266	43	21	9	25	1.82
42273915--42274407	245	2.0	247	99	0	972	35	10	14	39	1.80
42277226--42277254	12	2.3	13	94	5	51	0	96	0	3	0.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42277888--42277912	13	1.9	13	100	0	50	32	0	0	68	0.90
42285582--42285625	21	2.1	21	91	0	70	29	0	13	56	1.38
42285966--42286003	20	1.9	20	94	0	67	31	0	5	63	1.17
42288178--42288243	28	2.4	28	85	9	84	28	3	6	62	1.34
42288192--42288244	27	1.9	28	85	11	74	33	3	5	56	1.41
42288691--42289261	284	2.0	287	98	1	1121	42	14	15	28	1.85
42289859--42289883	13	1.9	13	100	0	50	88	0	12	0	0.53
42304010--42304055	3	16.0	3	82	8	60	36	2	60	0	1.09
42309023--42309076	24	2.3	24	87	3	74	22	14	16	46	1.84
42315781--42315814	3	11.7	3	87	6	52	35	0	0	64	0.94
42315781--42315819	14	2.9	14	88	7	55	33	0	2	64	1.08
42315834--42315864	16	1.9	16	93	0	53	48	3	0	48	1.17
42320429--42320484	26	2.3	26	87	9	82	21	3	7	67	1.30
42323755--42323788	9	3.7	9	88	4	50	55	2	0	41	1.15
42323752--42323788	5	7.8	5	82	11	51	54	2	0	43	1.14
42325617--42325680	24	2.5	25	85	7	76	21	4	6	67	1.32
42335404--42335814	108	3.8	108	91	3	625	35	17	16	31	1.92
42335404--42335814	217	1.9	214	89	5	639	35	17	16	31	1.92
42338097--42338301	102	2.0	103	99	0	403	26	15	14	42	1.86
42339293--42339337	20	2.2	20	80	11	56	44	0	0	55	0.99
42342556--42342607	24	2.2	24	82	0	59	53	7	7	30	1.57
42344517--42344543	3	9.0	3	100	0	54	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42346284--42346312	2	14.5	2	100	0	58	0	48	0	51	1.00
42365264--42365315	20	2.6	20	93	0	95	32	26	17	23	1.96
42367074--42367156	10	8.3	10	87	0	112	26	18	19	36	1.94
42378885--42378932	3	16.0	3	86	0	60	0	41	0	58	0.98
42378890--42378929	15	2.7	15	96	0	71	0	42	0	57	0.98
42378885--42378933	18	2.7	18	93	0	80	0	42	0	57	0.99
42390027--42390066	16	2.4	17	83	4	55	52	0	10	37	1.35
42392741--42392765	13	1.9	13	100	0	50	32	8	24	36	1.84
42398147--42398323	45	3.9	45	100	0	354	42	27	6	24	1.78
42402569--42402593	6	4.2	6	100	0	50	32	0	0	68	0.90
42403270--42403329	31	1.9	32	93	3	104	41	5	1	51	1.33
42409616--42409663	3	16.0	3	100	0	96	33	0	0	66	0.92
42412057--42412093	3	12.3	3	100	0	74	32	0	0	67	0.91
42423314--42423356	9	4.8	9	79	0	50	34	0	44	20	1.52
42423325--42423353	6	4.8	6	100	0	58	34	0	48	17	1.47
42423478--42423521	3	14.7	3	90	0	70	2	2	68	27	1.14
42435415--42435441	2	13.5	2	100	0	54	51	0	0	48	1.00
42435844--42435870	12	2.2	12	100	0	54	33	40	0	25	1.56
42445421--42445774	176	2.0	177	99	0	701	31	19	7	40	1.81
42445734--42445804	31	2.3	31	83	7	92	30	19	4	45	1.70
42447095--42447155	21	2.8	22	80	5	61	22	1	34	40	1.64
42447163--42447221	27	2.1	27	82	14	68	38	1	1	57	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42447849--42447882	8	4.2	8	96	0	50	50	5	0	44	1.26
42447853--42447882	2	15.0	2	92	0	51	50	3	0	46	1.18
42449392--42449830	218	2.0	219	99	0	871	42	7	10	40	1.66
42468402--42468452	26	1.9	27	92	4	86	19	11	0	68	1.20
42468402--42468440	12	3.0	13	81	11	53	15	15	0	69	1.20
42468402--42468456	13	4.2	13	78	17	51	20	12	0	67	1.23
42473996--42474035	5	8.0	5	100	0	80	40	0	20	40	1.52
42474204--42474277	31	2.4	30	84	2	94	48	1	8	41	1.41
42475738--42475914	88	2.0	89	96	1	329	44	14	16	25	1.85
42479724--42479758	2	17.5	2	93	0	61	0	45	0	54	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141