genome.fa.s1.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  44  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13758816--13759298	44	10.7	44	70	13	277	31	22	16	29	1.96
13758666--13758933	143	1.9	142	83	0	347	29	22	18	30	1.97
13758763--13759312	181	3.0	181	90	1	859	30	21	16	30	1.96
13758823--13759339	45	11.4	45	68	17	165	31	22	16	29	1.96
13760186--13760301	61	1.9	60	94	1	205	1	6	2	89	0.62
13760186--13760301	1	116.0	1	81	0	124	1	6	2	89	0.62
13765369--13765445	24	3.2	24	83	5	75	58	3	9	28	1.47
13765365--13765522	26	6.4	25	71	13	103	58	6	6	29	1.48
13765489--13765604	28	4.3	25	74	15	90	60	3	8	27	1.42
13765489--13765597	54	2.1	52	82	14	129	60	3	8	27	1.42
13770539--13770607	34	2.0	34	100	0	138	14	10	20	55	1.68
13770541--13770599	20	3.2	20	68	26	67	16	8	20	54	1.68
13779422--13779476	23	2.3	24	78	9	58	67	1	7	23	1.26
13803000--13803232	116	2.0	117	99	0	459	36	17	21	25	1.95
13809968--13810024	27	2.1	28	83	9	73	8	3	35	52	1.50
13811180--13811341	85	1.9	86	92	5	272	36	24	9	29	1.87
13815340--13815405	33	1.9	35	87	6	100	37	4	12	45	1.62
13815618--13815695	34	2.3	34	93	0	129	60	3	1	34	1.23
13816919--13817086	44	3.7	44	89	9	273	39	21	2	36	1.66
13834576--13834637	3	20.7	3	100	0	124	0	0	32	67	0.91
13845052--13845229	41	4.3	41	79	5	191	19	21	23	34	1.96
13845052--13845229	82	2.2	82	83	6	227	19	21	23	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13849523--13849584	27	2.3	27	97	0	115	45	24	14	16	1.84
13849577--13849683	27	3.9	27	83	3	133	41	19	17	21	1.91
13850026--13850092	28	2.4	28	87	2	100	22	25	22	29	1.99
13850026--13850105	28	2.9	28	83	5	74	25	25	22	27	2.00
13854379--13854412	17	2.0	17	88	0	50	17	2	20	58	1.51
13860020--13860045	13	2.0	13	100	0	52	46	7	15	30	1.74
13863607--13863681	36	2.1	36	87	0	105	64	0	2	33	1.08
13865274--13865325	17	2.9	17	86	13	61	59	5	0	34	1.21
13865733--13865757	2	12.5	2	100	0	50	0	48	0	52	1.00
13871209--13871329	47	2.6	47	87	0	179	34	18	23	23	1.96
13874049--13874090	2	21.5	2	87	4	59	45	0	2	52	1.13
13874592--13874664	36	2.0	36	100	0	146	35	12	19	32	1.89
13874789--13874923	41	3.3	41	93	0	225	28	18	25	28	1.98
13881509--13881541	16	2.1	17	88	11	52	51	0	15	33	1.43
13886984--13887045	26	2.3	26	94	2	106	12	29	19	38	1.89
13897154--13897198	22	2.0	22	83	12	56	51	8	6	33	1.59
13908266--13908304	16	2.4	16	87	8	53	71	17	2	7	1.21
13913483--13913508	2	13.0	2	100	0	52	0	50	0	50	1.00
13925535--13925568	13	2.8	12	91	8	52	79	0	0	20	0.73
13926626--13926691	28	2.4	27	75	12	62	36	6	3	54	1.41
13939445--13939784	44	7.6	44	69	13	201	31	18	21	28	1.97
13939426--13939824	142	3.0	129	86	9	593	30	18	22	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13939559--13939740	98	1.9	98	82	2	231	30	19	21	28	1.98
13940158--13940191	13	2.8	12	91	8	52	79	0	0	20	0.73
13941568--13941633	28	2.4	27	75	12	62	36	6	3	54	1.41
13945548--13945596	15	3.4	14	80	8	53	73	2	4	20	1.10
13946204--13946306	51	2.0	51	94	0	179	33	12	20	33	1.90
13947396--13947441	20	2.3	21	85	7	60	58	6	0	34	1.24
13948522--13948557	2	18.0	2	94	0	63	50	2	0	47	1.15
13963291--13963339	3	16.0	3	87	4	71	65	0	0	34	0.93
13978819--13978875	27	2.1	27	83	0	69	22	26	14	36	1.92
13978953--13979083	45	2.9	44	79	2	145	26	20	12	40	1.88
13981814--13981855	21	2.0	21	85	0	57	54	0	9	35	1.33
13982911--13982945	14	2.4	15	95	4	63	54	5	0	40	1.24
13984203--13984268	20	3.2	20	79	10	55	34	1	7	56	1.37
13984223--13984268	20	2.4	19	85	3	56	32	2	6	58	1.36
14003694--14003720	3	9.0	3	100	0	54	33	0	0	66	0.92
14004059--14004673	151	4.1	150	83	7	710	41	4	11	42	1.60
14008723--14008837	49	2.3	49	89	2	169	22	20	28	28	1.98
14011013--14011096	27	3.6	22	76	20	73	67	4	5	21	1.31
14014410--14014476	29	2.4	29	85	7	95	67	2	4	25	1.24
14027296--14027482	101	1.8	102	86	3	270	24	17	26	31	1.97
14027294--14027482	51	3.7	51	78	4	150	24	17	25	31	1.97
14027486--14027578	45	2.1	45	89	0	141	26	19	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14027707--14027731	8	3.1	8	100	0	50	64	0	24	12	1.27
14031579--14031616	15	2.6	15	83	4	51	18	7	2	71	1.23
14040253--14040358	51	2.1	51	100	0	212	18	33	9	38	1.83
14041806--14041834	15	1.9	15	100	0	58	31	13	20	34	1.92
14051205--14051255	17	3.1	16	81	15	59	39	0	0	60	0.97
14051857--14052240	97	3.8	97	81	7	457	29	0	14	56	1.42
14052111--14052147	16	2.4	16	86	8	51	40	0	2	56	1.13
14054526--14054701	74	2.4	73	88	7	259	27	6	11	54	1.60
14057657--14057714	17	3.6	16	75	6	55	63	15	0	20	1.30
14058895--14059008	19	6.0	19	70	14	67	54	4	0	40	1.26
14062723--14062799	13	5.9	13	93	0	127	38	25	11	23	1.89
14062723--14062799	39	2.0	39	97	0	145	38	25	11	23	1.89
14062941--14062980	20	2.0	20	90	5	62	60	2	5	32	1.32
14071067--14071484	215	1.9	215	98	0	809	33	8	19	37	1.83
14071475--14071619	41	3.6	41	89	0	202	29	21	22	26	1.99
14071492--14071619	41	3.1	41	90	1	204	28	21	23	25	1.99
14071492--14071660	82	2.1	82	81	5	191	28	22	23	24	1.99
14073888--14073931	19	2.4	18	80	3	52	6	43	0	50	1.29
14085931--14085962	6	5.3	6	100	0	64	84	0	0	15	0.63
14086707--14086749	16	2.6	16	81	3	50	27	34	2	34	1.70
14087198--14087227	8	3.8	8	100	0	60	90	0	0	10	0.47
14088185--14088217	17	1.9	17	93	0	57	27	27	6	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14096746--14096808	32	2.0	32	96	0	117	34	17	9	38	1.82
14096808--14096875	6	11.3	6	100	0	136	33	0	16	50	1.45
14097003--14097047	22	2.0	22	91	0	72	35	28	6	28	1.83
14101205--14101258	23	2.3	23	90	0	81	50	25	3	20	1.65
14101243--14101287	22	2.0	22	86	0	63	35	26	8	28	1.87
14101906--14102065	81	2.0	82	84	1	214	41	7	10	40	1.68
14103079--14103122	19	2.3	19	96	4	79	54	6	0	38	1.27
14103227--14103264	16	2.4	16	86	8	51	68	0	5	26	1.11
14104991--14105187	39	5.0	39	77	3	171	31	16	30	20	1.95
14104987--14105142	40	3.9	39	78	4	134	30	17	31	19	1.96
14104987--14105187	79	2.5	79	77	4	199	31	16	30	20	1.95
14110500--14110546	20	2.3	20	100	0	94	21	29	4	44	1.71
14112158--14112347	50	3.7	50	78	4	191	24	28	21	26	1.99
14112693--14112750	30	1.9	30	85	0	80	29	24	3	43	1.70
14116286--14116402	25	4.6	25	73	11	87	34	21	25	18	1.96
14116466--14116512	25	1.9	24	82	4	58	38	17	23	21	1.93
14129006--14129083	26	3.3	24	67	22	58	43	1	0	55	1.08
14129028--14129060	11	3.0	11	91	8	50	42	0	0	57	0.98
14129166--14129270	44	2.5	40	80	15	131	31	29	5	33	1.81
14129163--14129272	45	2.6	44	84	8	140	31	29	6	32	1.82
14129252--14129330	16	5.1	16	92	3	117	20	30	5	44	1.73
14135485--14135525	18	2.2	18	86	4	55	63	2	2	31	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14142170--14142315	45	3.3	45	94	2	260	41	10	6	41	1.66
14155274--14155316	21	2.0	21	95	0	77	32	25	4	37	1.77
14157556--14157584	3	9.7	3	100	0	58	68	0	0	31	0.89
14158881--14158936	28	2.0	28	85	0	76	32	14	21	32	1.93
14159250--14159412	86	1.9	86	93	1	283	33	13	7	45	1.71
14160134--14160175	14	3.0	14	76	13	50	38	0	7	54	1.28
14160216--14160243	13	2.2	13	100	0	56	46	7	0	46	1.30
14160633--14160687	22	2.5	23	82	11	62	32	7	0	60	1.24
14160710--14160749	13	3.2	13	89	3	55	35	0	0	65	0.93
14160705--14160754	19	2.4	22	90	9	79	32	0	0	68	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141