genome.fa.s1.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  18  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5744287--5744324	20	1.9	20	88	0	58	34	2	21	42	1.67
5744298--5744339	4	10.5	4	84	0	57	28	4	19	47	1.69
5744309--5744343	12	2.9	12	95	0	61	25	5	17	51	1.67
5750473--5750497	4	6.2	4	100	0	50	28	0	48	24	1.52
5754884--5754913	14	2.1	14	93	0	51	30	26	13	30	1.94
5756699--5756757	30	2.0	30	100	0	118	42	33	13	10	1.78
5757187--5757241	22	2.5	22	81	0	65	54	1	1	41	1.21
5757217--5757256	16	2.5	16	87	0	53	50	2	7	40	1.44
5757189--5757256	22	3.4	21	69	23	56	51	1	4	42	1.31
5757267--5757432	59	2.8	59	99	0	323	39	4	9	45	1.58
5758759--5758967	103	2.0	104	98	1	402	43	1	11	43	1.51
5763483--5763666	91	2.0	91	100	0	368	40	29	17	11	1.85
5768189--5768221	12	2.5	14	90	9	52	15	3	3	78	0.99
5785472--5785517	21	2.3	21	85	14	62	47	0	0	52	1.00
5785476--5785527	19	2.7	18	78	18	52	53	0	0	46	1.00
5785475--5785527	18	2.8	18	80	11	52	52	0	0	47	1.00
5795236--5795280	22	2.0	24	86	8	67	31	2	0	66	1.04
5799368--5799399	6	5.3	6	100	0	64	15	15	34	34	1.90
5803968--5804736	384	2.0	385	99	0	1531	36	11	16	35	1.84
5806489--5806561	35	2.1	36	94	2	130	54	8	0	36	1.30
5806500--5806573	35	2.1	35	84	0	94	62	10	0	27	1.28
5808161--5808204	19	2.2	20	80	4	54	70	4	9	15	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5808434--5808459	2	13.0	2	100	0	52	50	0	0	50	1.00
5816960--5816984	11	2.3	11	100	0	50	24	0	0	76	0.80
5817206--5817262	25	2.3	25	77	14	64	42	1	5	50	1.35
5822660--5822772	19	5.8	19	89	4	181	38	10	15	36	1.82
5822661--5822772	59	1.9	59	94	0	197	38	10	14	36	1.81
5823509--5823557	24	2.0	26	92	8	84	28	8	4	59	1.45
5824739--5824777	3	13.0	3	83	0	51	28	0	5	66	1.12
5825715--5825796	42	2.0	42	87	0	119	28	7	26	37	1.83
5826249--5826289	17	2.4	18	76	15	52	43	2	0	53	1.13
5827239--5827280	17	2.6	16	82	17	52	69	2	0	28	1.01
5830098--5830123	5	5.2	5	100	0	52	23	0	0	76	0.78
5830838--5830899	23	2.9	21	74	11	54	48	1	1	48	1.21
5832876--5832932	29	2.0	29	89	0	87	31	14	14	40	1.85
5833375--5833431	26	2.2	25	81	9	62	38	0	7	54	1.28
5837280--5837334	21	2.6	21	85	0	74	25	9	36	29	1.87
5842579--5842628	24	2.1	24	85	7	66	16	28	40	16	1.89
5842619--5842857	39	6.2	39	93	2	385	19	18	45	16	1.85
5846771--5846815	19	2.3	20	96	3	83	26	2	0	71	0.98
5846870--5846915	11	4.4	11	76	18	53	34	2	0	63	1.07
5846878--5846934	20	3.0	19	92	7	98	29	1	0	68	1.00
5846771--5846990	122	1.8	120	80	13	270	26	7	14	52	1.67
5848529--5850101	454	3.5	451	89	2	2188	31	22	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5854326--5854351	7	3.7	7	100	0	52	26	0	0	73	0.84
5863696--5864112	126	3.3	126	89	1	631	32	19	20	27	1.97
5869118--5869145	2	14.0	2	100	0	56	50	0	0	50	1.00
5869990--5870035	24	1.9	24	86	0	65	45	4	0	50	1.21
5882648--5882699	27	2.0	26	84	3	68	40	3	1	53	1.30
5882678--5882721	23	1.9	23	81	9	54	52	0	0	47	1.00
5886046--5886084	20	2.0	20	84	0	51	48	5	5	41	1.47
5890514--5890539	3	8.7	3	100	0	52	69	0	30	0	0.89
5897771--5897855	40	2.1	40	93	4	145	34	1	1	63	1.10
5898960--5898984	5	5.0	5	100	0	50	20	0	0	80	0.72
5900446--5900485	19	2.2	19	86	8	57	65	5	0	30	1.14
5902601--5902686	42	2.0	42	93	0	145	52	17	2	27	1.57
5903514--5903538	10	2.5	10	100	0	50	40	8	12	40	1.72
5916131--5916326	27	7.3	27	80	3	198	43	20	18	16	1.88
5916106--5916326	54	4.1	54	79	4	223	43	21	18	16	1.87
5916106--5916326	81	2.7	81	80	5	225	43	21	18	16	1.87
5916726--5916805	28	2.9	28	90	1	135	21	22	25	31	1.98
5918860--5918951	25	3.7	25	91	0	130	21	27	17	33	1.96
5918843--5918978	25	5.4	25	81	3	114	22	25	17	34	1.96
5918835--5918976	50	2.8	50	76	4	142	22	26	17	33	1.96
5921835--5921862	5	5.6	5	100	0	56	42	0	0	57	0.99
5923057--5923082	12	2.2	12	100	0	52	69	0	7	23	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5927854--5927981	43	3.0	43	79	8	161	31	27	17	23	1.97
5931049--5931203	23	6.7	23	91	0	256	21	20	27	30	1.98
5931049--5931203	69	2.2	69	96	0	292	21	20	27	30	1.98
5935552--5935617	13	5.0	13	75	3	60	42	22	0	34	1.54
5935526--5935624	40	2.5	40	83	0	117	39	21	1	38	1.60
5941297--5941353	3	19.0	3	96	0	105	31	0	1	66	1.02
5942746--5942793	2	24.0	2	95	0	87	52	0	0	47	1.00
5947116--5947153	16	2.4	16	95	0	67	55	0	0	44	0.99
5947644--5947675	5	6.6	5	96	3	57	37	0	0	62	0.95
5951395--5951427	15	2.1	16	88	5	50	39	9	18	33	1.82
5951612--5951716	45	2.3	45	83	0	138	23	14	17	44	1.85
5956008--5956061	25	2.1	26	83	10	67	55	1	0	42	1.10
5956029--5956075	20	2.3	21	78	10	53	59	0	0	40	0.97
5959768--5959875	53	2.0	53	98	0	207	33	12	20	33	1.91
5963854--5963904	23	2.2	23	85	0	66	41	21	7	29	1.81
5964328--5964353	4	6.5	4	100	0	52	50	0	0	50	1.00
5975619--5975645	2	13.5	2	100	0	54	51	0	0	48	1.00
5976641--5976701	28	2.1	29	87	3	88	60	8	1	29	1.35
5983773--5983810	16	2.4	16	86	8	51	65	0	31	2	1.06
5985795--5985822	2	14.0	2	100	0	56	50	0	0	50	1.00
5989081--5989121	21	2.0	20	85	4	55	48	2	2	46	1.28
5993358--5993444	40	2.2	40	76	15	92	40	0	3	56	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5993363--5993448	38	2.3	38	80	8	95	39	0	3	56	1.16
5994340--5994463	59	2.1	60	95	1	223	41	5	7	45	1.55
5996267--5996353	40	2.2	40	76	15	92	40	0	3	56	1.16
5996272--5996357	38	2.3	38	80	8	95	39	0	3	56	1.16
5997249--5997377	59	2.1	60	92	4	215	40	6	7	45	1.58
5997771--5997814	20	2.3	18	84	7	52	38	0	2	59	1.10
5997816--5997845	14	2.2	14	94	5	53	66	0	0	33	0.92
6003499--6003596	49	2.0	49	94	2	171	25	17	10	46	1.79
6007067--6007127	30	2.0	30	100	0	122	29	13	27	29	1.94
6012013--6012085	31	2.4	30	80	8	85	41	10	9	38	1.73
6014528--6014552	13	1.9	13	100	0	50	80	8	0	12	0.92
6018561--6018595	16	2.2	16	100	0	70	17	17	17	48	1.81
6026689--6026729	2	20.5	2	100	0	82	51	48	0	0	1.00
6036667--6036695	1	29.0	1	100	0	58	100	0	0	0	0.00
6036804--6036830	14	1.9	14	100	0	54	22	0	11	66	1.22
6051208--6051328	3	40.7	3	85	4	138	33	4	33	28	1.79
6051327--6051396	3	23.3	3	94	0	122	67	2	0	30	1.05
6058135--6058164	2	15.0	2	92	0	51	46	0	3	50	1.18
6064722--6064798	36	2.2	36	97	2	147	35	28	12	23	1.92
6077782--6077880	26	3.7	25	71	18	74	36	3	2	58	1.25
6078321--6078359	9	4.4	9	83	6	53	28	2	2	66	1.18
6078790--6078852	30	2.1	30	82	2	74	44	3	6	46	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6079155--6079194	20	2.1	19	85	4	53	45	2	5	47	1.38
6095544--6095762	108	2.0	109	98	0	422	32	11	10	44	1.75
6095766--6095803	18	2.1	18	90	0	58	44	2	0	52	1.14
6106205--6106238	17	1.9	18	88	5	52	29	0	0	70	0.87
6106486--6106527	10	4.3	10	84	3	59	21	0	0	78	0.75
6106486--6106535	20	2.7	18	87	9	66	24	0	0	76	0.80
6106486--6106583	27	3.6	27	68	21	71	29	2	0	68	1.01
6107261--6107309	6	8.7	6	84	13	52	32	0	0	67	0.91
6107261--6107309	11	4.4	11	78	14	55	32	0	0	67	0.91
6107595--6107666	14	4.7	15	69	19	51	47	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141