genome.fa.s1.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  92  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29791882--29791979	9	11.7	9	76	13	84	30	2	17	50	1.58
29791881--29791927	25	1.9	24	91	4	76	36	2	14	46	1.57
29791891--29792003	25	4.5	25	72	18	76	29	1	18	50	1.57
29791916--29791997	16	5.0	16	75	11	69	28	1	18	52	1.53
29791977--29792220	44	5.5	44	80	15	295	34	1	16	48	1.54
29791979--29792140	53	3.2	50	72	19	158	34	1	16	48	1.54
29792083--29792251	37	4.3	37	82	14	187	33	0	17	48	1.52
29792205--29792347	9	16.2	9	65	20	61	32	2	18	46	1.61
29792201--29792320	25	4.7	25	74	15	102	32	1	19	46	1.60
29792194--29792347	41	3.8	41	73	13	138	31	1	19	46	1.61
29792261--29792341	37	2.2	36	82	10	103	30	1	18	49	1.55
29792343--29792370	12	2.3	12	100	0	56	42	0	10	46	1.38
29793557--29793602	7	6.6	7	94	0	74	32	45	0	21	1.52
29794406--29794595	84	2.3	84	87	3	301	31	22	18	27	1.97
29794419--29794640	84	2.6	84	85	4	243	33	21	15	29	1.94
29795043--29795357	89	3.5	89	91	2	499	43	24	1	30	1.63
29795407--29795431	12	2.1	12	100	0	50	32	52	0	16	1.44
29795479--29795511	14	2.3	15	94	5	59	36	33	0	30	1.58
29795770--29796115	114	3.0	114	88	0	478	28	25	20	25	1.99
29796023--29796196	95	1.8	95	88	0	267	25	22	22	29	1.99
29807577--29807633	29	1.9	30	82	3	71	40	14	12	33	1.83
29807712--29807749	17	2.2	17	90	0	58	42	0	18	39	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29813408--29813469	33	1.9	32	87	9	90	38	4	1	54	1.31
29813871--29813911	17	2.4	18	80	19	52	56	0	4	39	1.21
29816713--29816749	18	2.1	18	100	0	74	21	27	13	37	1.91
29828872--29828947	38	2.0	38	97	0	143	40	9	23	26	1.84
29830929--29831113	44	4.2	44	67	18	132	25	24	21	28	1.99
29830879--29831158	132	2.1	132	94	0	488	25	25	21	28	1.99
29847484--29847521	17	2.2	18	90	4	60	39	5	10	44	1.61
29848926--29848984	30	2.0	30	83	6	75	37	32	10	20	1.86
29849024--29849157	29	4.6	29	81	3	142	34	28	12	24	1.92
29849048--29849160	60	1.9	60	92	0	190	38	27	11	23	1.89
29850880--29850931	25	2.1	25	100	0	104	44	13	23	19	1.86
29859476--29859545	33	2.1	33	100	0	140	42	24	2	30	1.69
29859815--29860083	41	6.6	41	83	1	279	36	16	26	20	1.93
29859803--29860083	82	3.4	81	81	4	307	35	16	26	21	1.94
29859788--29860096	123	2.5	123	77	8	317	36	15	25	22	1.94
29864883--29865025	54	2.6	54	80	8	157	21	25	20	32	1.97
29865133--29865167	15	2.2	16	90	5	54	28	28	17	25	1.97
29870764--29870801	17	2.4	16	83	12	51	42	2	5	50	1.39
29874490--29874556	11	6.4	11	79	20	81	56	0	2	40	1.14
29874500--29874533	17	2.0	17	100	0	68	58	0	0	41	0.98
29874652--29874722	34	2.2	33	85	10	92	19	32	14	33	1.92
29877484--29877568	27	3.1	27	79	0	80	34	20	20	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29877613--29877685	24	3.1	23	82	5	83	19	5	26	49	1.69
29877749--29877813	27	2.4	27	83	14	82	18	23	26	32	1.97
29877801--29877866	26	2.5	26	90	0	96	16	19	27	36	1.93
29877854--29878044	96	2.0	96	88	2	285	23	16	19	40	1.91
29877860--29878044	32	5.8	32	81	8	207	22	16	20	40	1.91
29879185--29879222	19	2.0	19	85	10	51	21	42	0	36	1.53
29880837--29880878	17	2.4	18	80	15	52	42	7	26	23	1.80
29888045--29888188	50	2.7	51	82	7	173	24	19	29	26	1.98
29892622--29892681	25	2.4	25	81	8	68	30	6	0	63	1.20
29892622--29892676	26	2.2	25	83	9	67	25	5	0	69	1.10
29898504--29898599	47	2.0	47	100	0	192	35	25	14	25	1.94
29905381--29905434	28	2.0	27	85	10	74	16	22	27	33	1.95
29910501--29911147	75	8.6	75	99	0	1269	32	30	19	16	1.95
29914943--29914999	19	2.9	19	73	5	51	68	5	3	22	1.25
29921900--29922046	61	2.4	61	85	2	188	31	12	24	31	1.93
29923796--29923879	7	12.0	7	93	0	114	36	0	34	28	1.58
29924740--29924764	13	1.9	13	100	0	50	24	4	0	72	1.02
29934420--29934481	16	3.6	18	71	18	60	32	6	3	58	1.40
29937190--29937304	57	2.0	58	98	1	223	26	10	14	48	1.76
29945910--29945993	25	3.4	25	84	0	105	27	19	19	34	1.95
29948687--29948713	6	4.5	6	100	0	54	85	0	0	14	0.61
29949711--29949771	30	2.0	32	87	6	90	13	18	11	57	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29951927--29952012	20	4.3	20	74	11	77	12	26	18	41	1.87
29956174--29956313	70	2.0	70	92	2	237	36	22	10	30	1.88
29957740--29957863	29	4.2	29	90	2	176	20	26	16	36	1.94
29967435--29967522	45	2.0	45	93	0	149	34	22	19	23	1.97
29967533--29967639	51	2.1	51	82	0	124	32	25	16	25	1.96
29970136--29970178	20	2.2	20	82	0	50	30	20	37	11	1.89
29975408--29975518	51	2.2	51	93	0	186	46	3	38	10	1.56
29976935--29977378	27	16.4	27	82	5	461	20	14	20	44	1.86
29988923--29988955	2	16.5	2	100	0	66	0	48	0	51	1.00
29993474--29993807	44	7.7	44	72	9	166	27	23	19	29	1.98
29993512--29993807	44	6.8	44	71	11	196	28	23	19	28	1.98
29993553--29993758	84	2.4	85	79	13	226	28	25	17	28	1.98
29993766--29994003	100	2.4	97	77	8	223	26	20	20	33	1.97
29993822--29993972	50	3.0	50	72	0	140	25	18	20	35	1.95
29993822--29994020	100	2.0	100	87	2	283	25	19	21	34	1.96
29993847--29994020	50	3.5	50	74	1	170	24	20	20	33	1.97
29994042--29994183	45	3.2	45	80	6	180	26	20	22	30	1.98
29994194--29994591	88	4.5	88	89	3	597	21	24	26	28	1.99
29994207--29994591	174	2.2	176	89	3	600	21	24	27	27	1.99
30001082--30001136	21	2.7	21	91	5	87	38	14	9	38	1.78
30015813--30016003	35	5.4	35	68	13	95	33	23	19	23	1.97
30016048--30016092	21	2.2	21	96	4	83	40	24	0	35	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30016064--30016155	37	2.5	36	85	7	96	38	22	1	38	1.62
30028991--30029063	37	2.0	37	97	0	137	45	17	6	30	1.75
30036935--30037091	81	1.9	81	97	0	296	44	24	8	22	1.80
30038386--30038422	16	2.3	16	90	0	56	29	8	37	24	1.84
30045369--30045787	187	2.3	180	90	4	630	24	25	7	42	1.81
30046077--30046109	14	2.3	15	90	10	52	57	0	42	0	0.98
30047941--30047973	3	11.0	3	100	0	66	66	33	0	0	0.92
30048809--30049883	315	3.4	315	89	3	1583	36	18	17	27	1.94
30058098--30058135	16	2.3	17	86	13	53	13	2	7	76	1.11
30062952--30062993	12	3.5	12	75	12	50	33	0	42	23	1.55
30062952--30062998	24	1.9	24	91	4	76	34	0	38	27	1.57
30063668--30064099	27	16.1	27	82	3	496	42	21	17	18	1.90
30064333--30064413	26	3.1	26	75	7	74	18	20	25	34	1.96
30064515--30064636	28	4.4	28	83	7	160	21	24	23	30	1.99
30070170--30070438	93	2.9	94	94	1	468	46	4	12	36	1.63
30070404--30070472	35	2.0	35	94	0	120	47	0	5	46	1.26
30070408--30070486	35	2.2	35	84	6	95	50	0	7	41	1.31
30070433--30070550	52	2.4	50	83	12	145	50	0	5	44	1.30
30071581--30071634	16	3.4	16	92	0	90	35	1	35	27	1.68
30074725--30074756	16	2.0	16	93	0	55	43	0	21	34	1.53
30083786--30083817	16	2.0	16	93	0	55	43	0	21	34	1.53
30088280--30088312	15	2.1	16	88	5	50	30	6	12	51	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30091959--30092024	34	2.0	33	88	8	98	42	0	10	46	1.38
30092000--30092109	47	2.3	48	81	9	127	53	1	8	36	1.41
30094778--30094830	26	2.0	27	88	3	81	26	20	18	33	1.96
30100370--30100413	16	2.8	16	73	13	54	34	11	27	27	1.91
30102695--30102752	29	2.0	29	100	0	116	27	34	10	27	1.89
30104278--30104314	6	6.3	6	87	12	51	45	0	2	51	1.15
30104278--30104314	17	2.1	18	95	5	67	45	0	2	51	1.15
30109027--30109141	43	2.7	42	78	8	124	31	26	15	26	1.96
30114934--30114974	21	2.0	21	90	0	64	17	39	26	17	1.91
30133680--30133765	27	3.2	27	90	1	129	41	23	19	15	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141