genome.fa.s1.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  116  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37107626--37107784	50	3.2	50	84	6	189	62	2	8	27	1.36
37107871--37107942	27	2.6	27	82	8	83	55	0	4	40	1.19
37107706--37108152	179	2.5	179	85	2	589	57	5	6	30	1.46
37108033--37108216	25	7.2	24	78	11	102	58	3	7	30	1.43
37107640--37108216	51	11.3	50	71	14	178	58	4	7	30	1.45
37109709--37110410	143	4.9	142	87	3	953	27	22	19	30	1.98
37109936--37110058	44	2.8	44	75	3	113	26	21	23	27	1.99
37122187--37122300	57	2.0	57	100	0	228	36	19	21	22	1.95
37126649--37126733	43	2.0	43	97	2	163	60	4	11	23	1.50
37128443--37128496	19	2.6	21	80	14	67	59	1	3	35	1.26
37134080--37134117	18	2.1	18	100	0	76	26	28	15	28	1.96
37161042--37161079	20	1.9	20	89	10	60	34	0	5	60	1.19
37174131--37174165	7	5.0	7	89	10	54	71	0	14	14	1.15
37175402--37175855	219	2.1	219	90	0	703	32	18	20	28	1.96
37175402--37175920	219	2.4	219	86	2	668	31	18	21	28	1.97
37175668--37176023	175	2.0	175	89	1	536	31	18	19	29	1.96
37175670--37176054	173	2.2	175	85	1	497	32	18	20	28	1.96
37176913--37176951	15	2.7	15	88	7	55	0	23	7	69	1.14
37183985--37184033	20	2.5	19	83	3	53	28	2	6	63	1.30
37207137--37207251	23	4.9	22	68	18	72	33	5	4	56	1.41
37210276--37210344	10	6.9	10	76	11	61	17	44	0	37	1.49
37210303--37210344	19	2.2	19	86	0	57	16	45	0	38	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37213890--37214155	147	1.8	146	87	2	399	22	39	8	30	1.83
37218523--37218555	17	2.0	17	94	5	59	21	6	24	48	1.72
37219144--37219202	21	2.8	21	94	0	100	33	22	25	18	1.96
37227192--37227235	5	8.2	5	92	7	61	22	0	2	75	0.92
37228886--37228923	6	6.5	6	84	3	51	15	0	5	78	0.91
37228886--37228923	18	2.2	17	90	4	58	15	0	5	78	0.91
37235293--37235349	29	2.0	29	89	0	87	28	12	26	33	1.92
37236490--37236520	14	2.2	14	94	0	53	38	0	12	48	1.42
37237350--37237384	15	2.3	15	90	9	54	71	0	2	25	1.00
37237945--37238015	27	2.6	25	80	14	63	16	7	4	71	1.24
37238307--37238703	194	2.0	196	90	3	629	27	8	17	46	1.77
37243567--37243609	22	2.0	21	91	8	70	23	18	13	44	1.86
37251586--37251776	7	25.9	7	68	15	73	18	3	37	40	1.68
37251596--37251655	22	2.7	22	79	7	59	18	5	41	35	1.72
37251672--37251761	8	11.9	8	74	16	59	18	2	36	42	1.63
37251662--37251761	22	4.5	21	70	17	60	19	2	35	44	1.62
37251744--37251789	22	2.1	22	84	8	58	26	0	19	54	1.44
37251737--37251803	29	2.3	29	82	5	73	25	1	22	50	1.57
37251943--37251985	22	2.0	22	85	0	59	25	4	32	37	1.77
37252026--37252067	21	1.9	21	85	9	57	61	4	9	23	1.45
37252177--37252252	40	1.9	40	91	0	125	15	10	22	51	1.74
37252231--37252625	116	3.4	113	78	5	292	26	14	19	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37252301--37252618	114	2.8	114	79	5	284	25	14	19	40	1.89
37252291--37252684	116	3.4	116	79	6	336	25	13	19	40	1.88
37252854--37252893	15	2.7	15	84	0	53	15	45	2	37	1.59
37252807--37252878	24	3.2	22	76	9	65	18	44	1	36	1.58
37253814--37253921	52	2.1	53	98	1	209	36	11	15	37	1.83
37254568--37254641	9	8.4	9	85	5	98	51	18	0	29	1.47
37259038--37259076	20	2.0	20	100	0	78	15	0	17	66	1.25
37260378--37260428	21	2.4	21	76	0	57	31	19	45	3	1.69
37260824--37261155	43	7.9	43	81	6	216	26	21	22	29	1.99
37260868--37261157	84	3.5	81	81	8	305	25	22	22	30	1.99
37260918--37261157	41	5.7	42	85	3	299	25	22	21	31	1.98
37261813--37262040	43	5.3	43	81	4	237	30	29	16	23	1.96
37262223--37262279	27	2.2	26	84	9	71	63	3	8	24	1.39
37265765--37265802	16	2.3	17	90	4	60	63	18	13	5	1.48
37267104--37267149	21	2.2	21	92	7	76	36	43	0	19	1.51
37267734--37267888	41	3.8	41	98	0	292	27	34	21	15	1.94
37273007--37273065	29	2.0	29	90	0	91	28	11	22	37	1.89
37283561--37283603	22	2.0	22	85	0	59	69	11	9	9	1.36
37286189--37286236	21	2.3	21	88	0	78	37	18	0	43	1.51
37292383--37292649	147	1.8	147	90	0	435	20	43	9	27	1.82
37299658--37299782	54	2.2	55	83	11	164	52	4	0	44	1.20
37313738--37313835	37	2.6	38	72	8	92	27	18	16	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37316478--37316517	3	13.3	3	100	0	80	65	0	0	35	0.93
37323824--37323866	3	14.3	3	95	0	77	62	0	0	37	0.95
37338979--37339021	21	2.0	21	100	0	86	32	13	11	41	1.81
37345788--37345908	9	13.4	9	88	3	181	42	21	9	25	1.83
37346007--37346047	18	2.3	18	86	0	55	14	2	43	39	1.59
37346740--37346782	12	3.4	12	87	6	50	72	0	4	23	1.04
37348690--37348849	43	3.7	42	78	3	122	26	16	24	31	1.96
37348715--37348809	42	2.2	43	81	3	111	26	17	24	31	1.97
37353317--37353390	38	1.9	38	91	5	123	2	25	12	59	1.46
37356028--37356054	11	2.5	11	100	0	54	22	7	18	51	1.70
37357494--37357702	92	2.3	91	86	5	278	45	3	3	46	1.39
37357630--37357677	26	1.9	25	84	16	64	45	0	2	52	1.12
37357852--37357893	15	2.7	16	82	14	52	45	0	2	52	1.13
37357843--37357884	15	2.9	15	82	10	52	47	0	0	52	1.00
37358107--37358176	16	4.4	16	90	0	104	25	34	2	37	1.71
37358176--37358556	190	2.0	190	100	0	762	33	15	14	36	1.87
37361759--37361805	18	2.6	18	83	6	51	36	0	4	59	1.17
37361773--37361844	28	2.6	27	81	12	85	36	2	2	58	1.27
37363888--37364053	25	6.6	25	100	0	332	28	16	32	22	1.96
37364282--37364347	25	2.6	25	82	0	69	33	21	30	15	1.94
37364691--37364719	10	2.7	11	89	10	51	37	17	0	44	1.49
37367581--37367624	18	2.4	19	85	7	56	40	2	0	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37374389--37374416	14	2.0	14	100	0	56	14	14	0	71	1.15
37374413--37374645	5	43.2	6	80	13	158	30	6	12	51	1.64
37374405--37374622	27	8.1	27	100	0	436	29	7	11	52	1.64
37379642--37379673	16	2.0	16	93	0	55	40	18	0	40	1.51
37392384--37392506	43	2.9	43	85	2	158	30	21	19	27	1.98
37392386--37392515	42	3.1	42	85	1	170	31	21	18	28	1.97
37392576--37392609	14	2.4	14	95	0	59	58	20	8	11	1.59
37392836--37392903	21	3.2	21	85	8	93	2	44	19	33	1.66
37399506--37399570	18	3.6	18	68	12	60	38	3	3	55	1.31
37400668--37400711	19	2.3	19	80	0	52	27	2	38	31	1.69
37401074--37401736	229	2.9	231	90	2	1012	34	19	17	28	1.95
37401704--37401769	33	2.0	33	96	0	123	34	25	18	21	1.96
37402278--37402314	7	5.3	7	90	0	56	43	54	0	2	1.14
37402603--37402633	15	2.0	16	93	6	55	38	45	0	16	1.47
37402891--37402939	18	2.5	21	80	9	59	26	2	10	61	1.39
37403289--37403620	113	2.9	113	79	7	331	30	23	22	23	1.99
37403319--37403620	112	2.7	113	79	7	314	28	23	23	24	2.00
37406242--37406300	32	1.9	32	86	6	86	62	0	0	37	0.95
37409467--37409636	82	2.1	82	81	4	191	44	11	14	29	1.81
37409613--37410231	87	7.2	88	84	5	687	44	10	14	30	1.78
37409666--37410231	173	3.3	172	83	3	676	44	10	13	31	1.78
37410908--37410949	20	2.1	20	90	0	66	52	7	7	33	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37424360--37424409	5	10.0	5	100	0	100	40	0	0	60	0.97
37427267--37427315	23	2.2	22	85	10	64	46	6	6	40	1.53
37430437--37430479	22	2.0	22	90	0	68	48	27	13	9	1.73
37431162--37431263	10	10.4	10	70	12	77	64	2	0	32	1.08
37431162--37431194	17	1.9	17	100	0	66	78	0	0	21	0.75
37431161--37431245	31	2.8	31	83	10	106	67	0	0	32	0.91
37431673--37431744	28	2.5	30	82	8	87	33	2	1	62	1.18
37431673--37431778	9	11.4	9	71	15	56	29	3	1	65	1.21
37432238--37432295	26	2.3	25	80	11	64	67	3	3	25	1.22
37433435--37433464	11	2.6	12	94	5	53	43	16	0	40	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141