genome.fa.s1.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  126  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40280253--40280284	12	2.4	14	90	10	50	25	0	0	75	0.81
40281628--40281695	9	7.4	9	85	9	93	39	27	10	22	1.86
40282370--40282404	17	1.9	19	88	11	56	54	0	5	40	1.24
40284664--40284701	18	2.1	18	90	0	58	31	0	2	65	1.06
40285469--40285780	151	2.1	152	97	0	590	36	9	6	46	1.63
40288192--40288225	9	3.9	9	88	7	52	29	0	0	70	0.87
40288192--40288224	17	1.9	17	93	0	57	30	0	0	69	0.88
40288164--40288228	9	6.8	9	75	16	51	26	3	1	69	1.12
40288172--40288227	19	2.8	19	76	15	60	28	3	0	67	1.07
40288908--40288963	25	2.2	25	81	6	69	46	0	1	51	1.11
40288953--40289000	20	2.3	20	89	3	69	41	2	6	50	1.39
40291565--40291596	16	2.0	16	100	0	64	18	12	31	37	1.88
40296436--40296476	3	13.7	3	100	0	82	0	34	0	65	0.93
40299698--40299749	25	2.1	24	82	10	61	67	1	1	28	1.12
40307405--40307432	13	2.2	13	100	0	56	46	7	14	32	1.71
40309846--40310155	96	3.2	97	86	2	410	40	3	17	38	1.66
40310367--40310392	2	13.0	2	100	0	52	50	0	0	50	1.00
40314999--40315023	12	2.1	12	100	0	50	0	0	16	84	0.63
40315788--40316003	71	3.0	71	100	0	432	20	25	11	42	1.85
40315967--40316024	28	2.1	28	100	0	116	17	34	3	44	1.65
40323143--40323181	20	1.9	21	89	5	62	38	0	0	61	0.96
40323519--40323792	136	2.0	137	97	1	514	37	11	13	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40324756--40324794	20	1.9	21	89	5	62	38	0	0	61	0.96
40336532--40336558	14	1.9	14	100	0	54	29	18	14	37	1.91
40336703--40336743	6	6.7	6	91	2	64	0	63	0	36	0.95
40346507--40346558	24	2.1	26	82	7	63	65	0	1	32	1.04
40346482--40346556	34	2.1	35	85	7	98	68	1	1	29	1.06
40346780--40346937	10	16.1	10	64	12	51	30	5	1	62	1.26
40346884--40346954	19	3.7	19	75	15	74	26	4	4	64	1.30
40346825--40346925	29	3.5	28	75	12	89	30	6	1	60	1.34
40346825--40346955	58	2.2	58	80	10	142	29	6	3	61	1.35
40357851--40357904	4	13.5	4	100	0	108	24	0	25	50	1.50
40366433--40366466	16	2.1	16	94	0	59	82	0	17	0	0.67
40371128--40371177	17	3.0	16	77	22	50	24	6	2	68	1.23
40376584--40376635	25	2.1	25	82	7	61	65	7	9	17	1.45
40377334--40377373	2	20.0	2	100	0	80	50	0	0	50	1.00
40380538--40380568	7	4.3	7	95	4	53	83	0	3	12	0.75
40380535--40380614	18	4.4	19	69	21	55	75	1	1	22	0.95
40380538--40380642	8	12.9	8	73	21	60	71	1	2	23	1.10
40383962--40384033	37	1.9	37	88	0	108	30	8	25	36	1.85
40385089--40385141	18	2.9	19	78	15	67	73	3	1	20	1.08
40388179--40388245	30	2.2	30	89	5	100	32	1	13	52	1.50
40402292--40402337	11	4.2	11	80	0	56	17	17	13	52	1.75
40418797--40418939	74	1.9	74	94	0	250	39	11	9	39	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40424011--40424143	65	2.0	65	83	0	167	38	15	9	36	1.79
40426176--40426954	156	5.0	155	86	4	1016	34	12	22	30	1.91
40426173--40426954	316	2.5	312	85	5	1051	34	12	22	30	1.91
40438365--40438422	28	2.2	26	87	6	80	44	0	1	53	1.10
40442524--40442657	60	2.3	59	80	5	137	35	5	14	44	1.70
40445361--40445428	27	2.5	27	85	7	93	48	2	4	44	1.38
40445926--40446025	19	5.4	20	69	21	76	46	9	7	38	1.63
40445935--40446064	52	2.5	51	88	4	190	44	8	5	41	1.57
40458848--40458901	21	2.7	20	82	5	63	35	1	1	61	1.18
40464473--40464512	20	2.0	20	100	0	80	35	15	15	35	1.88
40466882--40466951	36	1.9	36	91	0	113	20	24	17	38	1.93
40469723--40469787	34	2.0	32	88	11	98	27	23	12	36	1.90
40472114--40472264	10	15.4	10	66	19	61	64	0	5	29	1.17
40472126--40472175	18	2.8	18	79	8	57	64	0	8	28	1.22
40472133--40472184	18	2.8	18	82	2	59	63	0	7	28	1.22
40472173--40472225	19	2.8	19	82	2	63	60	0	3	35	1.15
40472169--40472264	30	3.2	30	69	16	74	65	0	5	29	1.14
40472459--40472495	18	2.0	19	89	5	58	24	0	2	72	0.97
40472524--40472582	17	3.4	17	75	9	64	44	0	0	55	0.99
40480239--40480289	11	4.5	11	78	9	50	47	0	1	50	1.12
40480137--40480332	103	1.9	102	81	8	236	38	8	2	50	1.45
40487250--40487286	17	2.1	18	90	5	58	45	2	2	48	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40489918--40489976	19	3.1	19	85	11	68	33	1	6	57	1.35
40489941--40489977	18	2.0	19	94	5	67	32	0	10	56	1.34
40490412--40490477	31	2.1	31	88	0	96	40	7	15	36	1.75
40490425--40490500	31	2.4	31	84	2	89	43	10	19	26	1.83
40495620--40495693	4	18.5	4	100	0	148	24	0	25	50	1.50
40496064--40496115	24	2.2	24	85	0	68	61	3	1	32	1.25
40496071--40496122	24	2.2	24	82	6	61	59	3	0	36	1.16
40501080--40501235	41	3.8	41	74	4	143	19	15	25	40	1.90
40501102--40501257	82	1.9	82	86	5	226	16	15	26	41	1.88
40501118--40501257	41	3.4	42	69	16	105	16	14	27	42	1.87
40501866--40501973	7	14.4	7	69	12	63	22	0	43	33	1.60
40501863--40501976	15	7.5	15	70	12	72	21	0	44	32	1.59
40501865--40501945	29	2.8	29	84	5	110	22	1	43	33	1.61
40501921--40501970	24	2.0	25	88	11	77	20	0	48	32	1.50
40504282--40504339	26	2.2	26	96	0	107	39	13	5	41	1.67
40504805--40504835	16	1.9	16	100	0	62	38	3	6	51	1.44
40505776--40505843	31	2.2	31	97	0	127	22	26	20	30	1.98
40505894--40505987	42	2.2	43	83	12	122	29	21	23	25	1.99
40505907--40505987	42	1.9	42	90	9	130	29	20	22	27	1.99
40506435--40506483	12	4.3	12	72	15	50	0	40	20	38	1.53
40506447--40506515	21	3.3	21	89	0	93	1	40	21	36	1.63
40508726--40508754	15	1.9	15	100	0	58	27	13	13	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40510207--40510237	9	3.4	9	90	0	53	25	12	22	38	1.90
40510370--40510426	29	1.9	30	96	3	107	19	42	0	38	1.51
40510530--40510589	30	2.0	31	86	3	86	20	40	0	40	1.52
40511372--40511871	115	4.4	114	80	4	468	32	22	16	28	1.96
40512392--40512441	21	2.4	21	82	0	64	42	40	2	16	1.59
40512450--40512481	17	2.0	17	88	11	50	46	31	0	21	1.52
40512745--40512774	10	3.0	10	95	0	51	30	6	0	63	1.20
40512945--40513271	113	2.9	114	89	2	489	31	25	19	23	1.98
40513240--40513390	39	3.8	38	75	7	115	21	20	21	36	1.95
40515132--40515199	21	3.2	21	87	0	91	35	19	42	2	1.66
40515165--40515224	12	5.2	12	72	11	54	40	18	38	3	1.67
40519955--40519998	19	2.2	20	84	8	54	29	4	0	65	1.12
40523257--40523416	79	2.0	80	98	1	313	42	6	6	45	1.54
40524567--40524641	32	2.3	32	84	8	91	16	16	28	40	1.89
40540445--40540486	20	2.2	20	83	8	52	35	0	9	54	1.33
40540479--40540550	32	2.2	33	85	7	94	30	4	13	51	1.60
40540903--40540969	13	5.0	13	69	24	50	40	0	1	58	1.07
40540912--40540963	26	2.0	26	92	0	86	38	0	1	59	1.08
40541464--40541509	22	2.0	23	87	4	67	34	0	0	65	0.93
40541953--40542000	23	2.1	23	96	0	87	27	0	18	54	1.44
40542252--40542304	4	12.8	4	77	15	54	71	1	20	5	1.16
40543150--40543240	41	2.2	40	86	1	119	28	15	20	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40545327--40545502	88	2.0	88	100	0	352	36	15	11	36	1.84
40549310--40549458	74	2.0	75	98	1	291	44	13	8	34	1.73
40553207--40553346	40	3.5	40	77	6	142	27	16	24	31	1.96
40558183--40558211	14	2.1	14	100	0	58	41	31	6	20	1.79
40559863--40559963	52	1.9	52	93	0	175	34	25	7	31	1.85
40562033--40562075	21	2.0	23	86	9	63	46	2	2	48	1.27
40562283--40562836	274	2.0	274	99	0	1099	42	18	9	29	1.82
40563533--40563586	22	2.5	22	78	0	63	33	1	1	62	1.16
40567818--40567966	74	2.0	75	98	1	291	41	2	5	50	1.39
40569561--40569621	20	3.2	19	83	9	70	34	0	6	59	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141