genome.fa.s1.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  95  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30951927--30951958	16	2.0	16	93	0	55	46	6	21	25	1.74
30952139--30952984	425	2.0	424	91	0	1370	26	20	12	40	1.88
30968626--30968921	19	15.8	19	81	3	368	41	8	12	37	1.73
30968740--30968792	14	3.4	14	77	22	61	37	11	15	35	1.83
30970114--30970224	19	5.8	19	88	0	168	40	9	14	36	1.77
30971510--30971581	30	2.4	30	80	0	90	38	12	20	27	1.89
30971585--30971714	30	4.4	30	73	13	124	38	11	26	23	1.89
30971585--30971757	89	1.9	89	82	2	213	38	14	24	23	1.92
30985762--30985809	16	2.8	17	74	20	55	52	4	10	33	1.55
30986966--30987082	59	2.0	59	86	1	162	40	25	20	13	1.89
30986929--30987038	38	2.9	38	88	0	166	40	30	18	11	1.86
30986923--30987059	22	6.8	22	67	19	84	40	29	17	12	1.86
30989150--30989187	19	2.1	19	85	5	51	44	13	5	36	1.66
30994426--30994455	1	30.0	1	100	0	60	100	0	0	0	0.00
30995356--30995390	16	2.2	16	89	0	52	45	17	0	37	1.48
30996724--30996970	69	3.6	68	79	7	273	32	22	22	22	1.98
30996832--30996967	34	3.9	35	75	2	114	33	21	22	22	1.97
30996929--30997014	44	2.0	44	88	4	129	29	17	25	27	1.97
30996858--30997080	113	2.0	113	82	3	270	31	20	25	22	1.98
30997004--30997166	69	2.4	69	88	0	236	28	24	28	19	1.98
30997208--30997255	20	2.4	20	92	0	78	39	29	0	31	1.57
31001504--31001539	18	2.0	18	100	0	72	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31003271--31003317	23	2.0	24	84	12	62	29	21	4	44	1.71
31003510--31003565	26	2.2	25	87	12	78	46	21	19	12	1.83
31003746--31003866	64	1.9	64	89	3	190	34	30	19	15	1.93
31010330--31010386	26	2.2	25	84	12	71	45	21	19	14	1.85
31010417--31010503	26	3.4	26	78	7	88	39	19	21	19	1.93
31014002--31014169	76	2.2	76	92	1	275	35	17	23	23	1.96
31014119--31014447	35	9.5	35	70	10	194	31	23	24	20	1.98
31014119--31014446	69	4.8	69	85	1	408	31	23	24	21	1.98
31014488--31014525	20	1.9	20	88	0	58	42	21	0	36	1.53
31017475--31019750	751	3.0	759	86	4	3239	25	13	21	38	1.90
31022171--31022242	27	2.8	26	82	4	92	27	23	25	23	2.00
31023282--31023330	23	2.2	23	82	10	57	10	4	18	67	1.36
31026902--31026939	18	2.2	18	85	4	51	13	26	44	15	1.83
31032215--31032263	24	2.0	24	100	0	98	38	20	20	20	1.93
31035782--31035848	33	2.0	33	94	0	116	23	23	5	46	1.74
31044941--31044993	27	2.0	27	88	0	79	35	11	5	47	1.63
31053774--31053812	17	2.2	18	90	4	62	25	51	5	17	1.66
31057658--31057693	9	4.1	9	89	7	56	41	13	0	44	1.44
31057658--31057693	17	2.1	17	89	5	54	41	13	0	44	1.44
31058438--31058639	43	4.7	43	80	2	219	24	15	22	37	1.93
31058432--31058639	84	2.4	85	84	1	274	24	15	22	37	1.93
31060885--31060941	2	28.5	2	96	0	105	1	0	47	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31063904--31063948	18	2.5	18	88	0	63	46	15	4	33	1.66
31064968--31065031	25	2.6	25	73	9	58	28	9	7	54	1.60
31068446--31068510	13	5.1	13	83	3	87	30	6	26	36	1.81
31069869--31069945	13	5.9	13	89	0	109	24	10	23	41	1.85
31069988--31070193	104	2.0	104	97	0	385	46	5	11	36	1.64
31070038--31070199	51	3.1	51	62	13	123	49	4	9	36	1.57
31073055--31073112	14	4.5	13	77	16	57	25	1	0	72	0.94
31073055--31073112	27	2.2	25	84	6	71	25	1	0	72	0.94
31075996--31076031	4	9.0	4	100	0	72	0	25	0	75	0.81
31077654--31077711	22	2.6	22	81	7	64	41	17	5	36	1.72
31078317--31078436	47	2.7	45	81	7	136	29	25	17	27	1.98
31078239--31078606	179	2.1	177	87	5	537	27	23	18	30	1.98
31080332--31080967	44	14.9	44	89	6	988	29	27	18	24	1.98
31080339--31080967	210	3.0	212	90	6	958	29	27	18	24	1.98
31080334--31080967	254	2.5	254	95	0	1142	29	27	18	24	1.98
31080774--31080838	34	1.9	34	96	0	121	29	26	23	21	1.99
31080686--31080926	122	2.0	122	94	0	419	29	26	19	24	1.98
31086836--31086880	22	2.0	22	86	4	63	37	17	6	37	1.76
31087382--31087432	23	2.2	23	89	0	75	29	9	21	39	1.85
31089301--31089343	21	2.0	21	100	0	86	60	16	4	18	1.52
31089516--31089578	17	3.5	17	69	12	54	34	3	12	49	1.57
31089513--31089587	37	2.0	37	94	0	114	36	4	14	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31092220--31092259	16	2.5	16	83	0	53	40	2	30	27	1.70
31092239--31092334	44	2.1	46	86	3	133	30	5	29	35	1.79
31094366--31094465	49	2.0	49	88	3	148	47	11	9	33	1.70
31096143--31096214	30	2.4	30	97	0	135	55	15	25	4	1.58
31096486--31096649	19	8.1	19	72	18	118	31	2	12	54	1.50
31096486--31096673	64	3.0	63	90	6	287	31	2	12	53	1.53
31096725--31096815	47	1.9	48	90	2	148	48	7	4	39	1.52
31096907--31096942	17	2.1	17	89	0	54	63	11	5	19	1.46
31097201--31097239	10	3.9	10	86	0	60	56	17	12	12	1.67
31097218--31097308	25	3.6	25	79	5	110	57	13	9	19	1.64
31098911--31098951	12	3.5	12	75	18	50	58	21	12	7	1.58
31100534--31101235	233	3.0	231	92	1	1145	27	16	26	29	1.97
31101586--31101618	7	4.7	7	100	0	66	27	0	15	57	1.38
31104423--31104839	126	3.3	125	91	2	683	28	20	17	34	1.95
31104882--31105179	96	3.1	96	88	3	429	40	18	3	37	1.66
31105230--31105263	6	5.5	6	86	6	50	38	44	0	17	1.49
31106233--31106271	17	2.2	17	86	4	51	33	0	5	61	1.18
31106910--31106957	25	1.9	25	83	8	62	45	0	0	54	0.99
31106926--31106969	21	2.1	21	82	0	52	50	0	0	50	1.00
31107646--31107697	27	2.0	25	81	7	59	50	19	5	25	1.69
31109298--31109341	22	2.0	22	82	8	54	27	4	63	4	1.33
31111705--31111771	29	2.3	30	82	10	77	50	10	2	35	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31113200--31113226	13	2.1	13	100	0	54	22	22	18	37	1.95
31114222--31114256	15	2.2	16	90	5	54	82	2	0	14	0.77
31114754--31114844	19	4.9	18	72	23	73	67	4	3	25	1.25
31114800--31114863	14	3.8	17	77	22	64	73	3	0	23	0.97
31114800--31114851	19	2.8	19	77	13	63	69	3	0	26	1.06
31114837--31114866	7	4.3	7	100	0	60	83	0	0	16	0.65
31115031--31115073	21	2.0	21	86	0	59	37	0	2	60	1.10
31119022--31119053	15	2.1	15	100	0	64	31	6	18	43	1.75
31119165--31119189	5	5.0	5	100	0	50	20	0	0	80	0.72
31123988--31124028	21	1.9	22	90	5	66	43	0	0	56	0.99
31127500--31127913	121	3.4	121	99	0	812	43	0	4	51	1.26
31127690--31127874	38	4.7	37	69	18	106	43	1	5	49	1.32
31127997--31128101	44	2.5	40	73	15	104	32	28	4	34	1.78
31127995--31128104	45	2.6	44	78	8	122	32	28	5	33	1.80
31128083--31128139	16	3.6	16	95	0	96	29	36	0	33	1.58
31128085--31128152	16	4.2	16	94	0	91	32	35	0	32	1.58
31130301--31130345	23	2.0	23	81	0	54	22	0	15	62	1.33
31134146--31134178	14	2.3	15	89	5	50	30	15	30	24	1.95
31134258--31134296	11	3.5	11	83	16	53	82	2	15	0	0.79
31134257--31134296	17	2.3	18	91	4	64	82	2	15	0	0.77
31135666--31135851	92	2.0	92	87	2	266	27	23	23	25	2.00
31136032--31136088	29	2.0	29	82	6	71	38	12	14	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31136655--31136688	14	2.4	14	90	5	50	76	0	5	17	0.98
31136735--31136788	22	2.4	22	84	6	63	42	5	12	38	1.67
31138194--31138781	44	13.4	44	65	17	150	29	23	18	29	1.97
31138170--31139304	127	8.8	128	93	1	1446	28	23	18	29	1.98
31140666--31140702	14	2.6	15	83	12	51	10	18	0	70	1.16
31143620--31143645	13	2.0	13	100	0	52	46	15	7	30	1.74
31146052--31146105	22	2.4	22	84	6	63	42	5	12	38	1.67
31147191--31147425	50	4.9	50	72	10	200	30	20	22	26	1.98
31147200--31147385	92	2.0	92	93	0	318	28	22	23	25	1.99
31147378--31147761	168	2.3	168	89	1	583	29	18	24	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141