genome.fa.s1.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  132  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42484839--42484866	2	14.0	2	100	0	56	0	50	0	50	1.00
42487093--42487132	21	2.0	20	85	5	53	65	7	2	25	1.32
42493140--42493169	7	4.3	7	100	0	60	13	26	13	46	1.80
42494596--42494633	3	12.7	3	100	0	76	34	0	0	65	0.93
42494631--42494786	77	2.0	78	98	1	305	31	20	6	41	1.77
42500055--42500103	24	2.0	24	96	0	89	12	18	0	69	1.19
42504532--42504694	87	1.9	89	84	2	222	31	3	14	49	1.61
42511430--42511463	18	1.9	17	88	5	50	41	8	5	44	1.60
42512379--42512406	14	2.0	14	100	0	56	28	0	7	64	1.20
42516456--42516514	31	1.9	31	89	6	93	27	18	6	47	1.74
42519821--42519847	13	2.1	13	100	0	54	29	0	7	62	1.22
42526105--42526368	131	2.0	133	96	1	496	25	18	13	42	1.87
42528000--42528881	125	7.1	125	98	0	1658	19	10	23	47	1.79
42530504--42530917	125	3.2	124	84	8	490	18	10	23	46	1.80
42539634--42539737	52	2.0	52	90	1	163	36	6	11	45	1.67
42539647--42539746	52	1.9	52	97	0	191	33	6	12	49	1.64
42544068--42544092	11	2.3	11	100	0	50	48	24	0	28	1.52
42549323--42549632	108	2.9	108	91	3	484	32	19	16	31	1.94
42550402--42550444	3	14.3	3	85	0	59	72	2	0	25	0.97
42552675--42552699	11	2.3	11	100	0	50	48	24	0	28	1.52
42552861--42552944	43	2.0	43	83	4	107	26	20	23	29	1.99
42556178--42556253	38	2.0	38	89	0	116	42	9	13	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42562312--42562342	8	3.9	8	100	0	62	51	0	0	48	1.00
42567743--42567788	15	3.0	17	79	20	57	43	0	0	56	0.99
42570075--42570113	20	2.0	20	85	10	53	23	2	0	74	0.94
42570344--42570368	13	1.9	13	100	0	50	64	0	4	32	1.12
42575068--42575102	1	35.0	1	100	0	70	0	0	0	100	0.00
42575254--42575305	26	2.0	27	88	7	81	63	7	9	19	1.48
42577222--42577286	33	2.0	33	93	0	112	40	13	15	30	1.86
42579049--42579326	103	2.6	105	86	6	386	55	14	16	13	1.69
42579503--42579543	21	2.0	21	85	9	57	60	4	0	34	1.18
42587841--42588172	165	2.0	166	99	0	657	34	10	21	32	1.88
42592949--42593195	123	2.0	124	99	0	487	38	9	10	41	1.73
42596826--42596868	18	2.4	19	84	11	63	44	0	2	53	1.13
42614696--42614721	13	2.0	13	100	0	52	30	7	23	38	1.83
42623279--42623318	21	2.0	20	85	5	53	50	2	10	37	1.50
42632692--42632734	22	2.0	21	82	13	52	34	9	9	46	1.68
42632693--42632734	23	1.9	21	85	9	57	35	7	9	47	1.64
42633313--42633339	13	2.1	13	100	0	54	70	0	0	29	0.88
42639603--42639643	22	1.9	22	85	5	57	56	2	4	36	1.34
42643267--42643293	6	4.5	6	100	0	54	51	0	0	48	1.00
42651539--42651596	31	2.0	28	83	16	73	32	13	8	44	1.75
42659046--42659090	21	2.1	21	84	8	56	33	2	6	57	1.37
42659031--42659093	18	3.5	18	76	6	65	31	1	4	61	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42661296--42661490	94	2.1	94	98	0	372	31	10	15	43	1.80
42664246--42664316	36	2.0	36	91	5	117	25	26	21	26	1.99
42664312--42664371	18	3.3	18	77	9	77	33	20	26	20	1.97
42665261--42665296	18	1.9	19	88	5	56	58	13	0	27	1.36
42667188--42667301	43	2.7	43	87	2	158	30	22	19	27	1.98
42672716--42672824	55	2.0	55	96	1	202	54	11	11	22	1.68
42674745--42674815	36	2.0	36	91	5	117	25	26	21	26	1.99
42674811--42674870	18	3.3	18	77	9	77	33	20	26	20	1.97
42688466--42688611	72	2.0	73	98	1	285	26	9	12	52	1.69
42691635--42691744	55	2.0	55	94	3	195	51	12	12	22	1.73
42692178--42692231	26	2.1	26	93	3	92	50	14	14	20	1.78
42698488--42698703	51	4.3	51	91	2	346	28	22	15	34	1.94
42701194--42701228	6	5.8	6	96	0	52	17	42	17	22	1.88
42701190--42701228	12	3.2	12	92	0	60	17	43	15	23	1.87
42704527--42704576	21	2.3	23	80	16	61	64	0	4	32	1.12
42705439--42705474	14	2.6	14	91	4	56	47	0	5	47	1.25
42709199--42709226	2	14.0	2	100	0	56	50	0	0	50	1.00
42713227--42713268	17	2.5	17	92	0	66	61	7	0	30	1.22
42716746--42716771	12	2.2	12	100	0	52	15	7	57	19	1.62
42717399--42717558	79	2.0	79	98	0	311	38	2	6	52	1.42
42720441--42720517	14	5.0	15	71	20	52	42	15	9	32	1.78
42720457--42720496	20	2.0	20	90	0	62	50	12	10	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42720445--42720511	34	1.9	35	90	3	109	46	13	8	31	1.74
42720480--42720519	14	2.9	14	84	0	53	42	17	7	32	1.77
42730938--42730966	14	2.0	15	93	6	51	55	0	0	44	0.99
42734118--42734150	15	2.1	16	88	5	50	78	0	0	21	0.75
42735650--42735707	30	2.0	29	82	3	71	37	10	8	43	1.70
42740971--42741004	17	2.0	17	94	0	59	11	8	20	58	1.59
42744588--42744827	120	2.0	120	99	0	471	28	24	17	29	1.98
42751797--42751846	19	2.5	19	83	6	55	64	6	0	30	1.18
42756824--42757014	93	2.1	93	97	0	364	28	15	14	41	1.86
42760901--42760955	29	2.0	26	83	16	67	32	14	12	40	1.84
42765730--42765842	56	2.0	57	88	6	169	33	23	2	39	1.69
42768152--42768190	20	2.0	20	85	10	53	43	0	0	56	0.99
42768627--42768685	30	1.9	31	93	3	102	66	0	1	32	1.02
42773633--42773692	28	2.1	28	96	0	111	41	11	10	36	1.75
42776312--42776361	21	2.4	20	80	9	55	24	4	0	72	1.02
42776326--42776361	18	2.0	18	89	10	56	22	2	0	75	0.94
42776533--42776579	15	3.1	15	81	6	58	27	0	6	65	1.16
42776590--42776631	22	1.9	22	85	0	57	38	2	4	54	1.34
42778643--42778695	23	2.2	24	90	9	83	49	11	20	18	1.78
42782136--42782236	52	1.9	53	81	2	123	30	9	12	46	1.75
42785958--42786004	5	10.0	5	90	4	64	0	14	2	82	0.75
42785960--42786004	22	2.0	22	87	8	65	0	13	2	84	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42798492--42798543	22	2.4	22	75	9	54	53	0	5	40	1.25
42806772--42806816	17	2.7	17	82	3	56	40	0	0	60	0.97
42807161--42807198	19	2.0	19	90	10	60	63	0	0	36	0.95
42807169--42807211	19	2.2	20	83	4	52	62	2	2	32	1.20
42815098--42815136	18	2.2	17	86	4	51	33	15	0	51	1.44
42816587--42816648	29	2.1	31	81	6	74	35	4	12	46	1.64
42818248--42818280	12	2.8	12	90	4	50	24	6	0	69	1.10
42824353--42824381	11	2.6	11	100	0	58	27	31	17	24	1.97
42830450--42830493	21	2.2	20	83	4	52	20	9	4	65	1.38
42841284--42841391	40	2.7	40	95	0	189	44	2	25	27	1.68
42846765--42846820	28	2.0	28	89	0	85	42	17	12	26	1.85
42863893--42863941	21	2.4	19	80	16	53	40	0	2	57	1.10
42875251--42875302	24	2.2	24	85	0	68	61	1	1	34	1.18
42875705--42875925	121	1.8	122	97	2	417	46	4	18	31	1.68
42877399--42877450	24	2.2	24	85	0	68	61	1	1	34	1.18
42877461--42877912	226	2.0	226	100	0	904	30	18	16	34	1.93
42878741--42878796	29	1.9	29	85	7	78	25	1	7	66	1.27
42886630--42886694	3	21.7	3	83	0	85	32	38	0	29	1.58
42891947--42891971	2	12.5	2	100	0	50	0	48	0	52	1.00
42894416--42894670	130	2.0	130	95	0	456	32	18	16	33	1.93
42897602--42897723	29	4.3	29	75	14	87	35	3	2	59	1.27
42897673--42897721	18	2.8	17	81	15	55	28	2	2	67	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42897634--42897721	20	4.6	19	71	22	60	31	2	2	63	1.19
42898668--42898701	17	2.0	17	88	0	50	41	23	5	29	1.78
42907449--42907494	14	3.4	14	76	11	60	28	15	6	50	1.69
42907448--42907499	26	2.0	26	100	0	104	26	15	7	50	1.71
42910201--42910250	3	16.7	3	100	0	100	68	0	32	0	0.90
42912973--42913011	18	2.2	18	90	0	60	30	0	0	69	0.89
42920825--42920856	13	2.5	13	94	0	55	81	3	15	0	0.82
42921469--42921501	17	1.9	17	93	0	57	45	0	12	42	1.41
42923851--42924526	234	2.9	234	84	4	835	29	10	19	40	1.85
42929043--42930180	105	11.2	99	87	7	1371	40	5	31	22	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141