Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  40  of  141  ( 16825 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12774316--12775416
78
14.0
78
86
3
1356
36
19
16
27
1.93
12774316--12775416
155
7.0
156
85
5
1312
36
19
16
27
1.93
12773014--12774903
941
2.0
944
95
0
3439
36
16
16
30
1.91
12774316--12775416
233
4.7
234
86
4
1462
36
19
16
27
1.93
12776258--12776307
14
3.4
15
83
10
59
6
2
8
84
0.86
12776257--12776317
29
2.1
29
82
14
72
4
1
8
85
0.80
12776257--12776316
14
4.2
13
78
18
57
5
1
8
85
0.81
12782004--12782096
38
2.5
36
82
6
98
46
10
12
30
1.76
12782037--12782112
17
4.3
18
87
11
97
46
10
13
30
1.76
12782043--12782114
35
2.1
33
87
10
101
45
11
15
27
1.80
12782519--12782565
14
3.4
14
80
13
62
0
17
0
82
0.66
12782517--12782552
16
2.3
15
90
4
54
0
19
0
80
0.71
12782518--12782570
11
5.0
10
77
20
54
0
16
0
83
0.66
12782517--12782567
13
3.6
15
71
15
54
0
17
0
82
0.67
12782519--12782565
7
6.9
7
76
13
53
0
17
0
82
0.66
12782517--12782567
20
2.4
21
83
6
68
0
17
0
82
0.67
12783258--12783401
29
4.9
29
80
7
157
42
5
20
31
1.75
12783248--12783401
30
5.2
30
80
6
172
41
5
20
32
1.76
12783248--12783401
59
2.6
59
83
7
188
41
5
20
32
1.76
12783399--12783442
21
2.2
19
84
8
52
9
2
4
84
0.85
12783406--12783435
12
2.5
12
94
0
51
10
0
6
83
0.81
12784348--12784538
37
5.1
36
86
5
256
28
5
16
49
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12784411--12784511
20
5.4
19
67
13
75
30
5
18
44
1.74
12784431--12784491
17
3.4
17
70
12
59
29
3
16
50
1.61
12784334--12784538
112
1.8
112
86
6
299
29
5
16
49
1.67
12785666--12785713
21
2.3
20
76
13
53
62
2
2
33
1.18
12786180--12786213
11
3.0
11
86
4
50
50
2
0
47
1.16
12795032--12795056
13
1.9
13
100
0
50
36
40
16
8
1.77
12797883--12797972
36
2.5
36
83
0
108
44
24
12
18
1.84
12806839--12806905
18
3.8
17
76
5
62
19
23
26
29
1.98
12813093--12813350
109
2.4
108
90
0
399
31
15
18
35
1.91
12813093--12813382
109
2.7
109
87
2
359
30
15
18
35
1.92
12817974--12818009
3
12.0
3
100
0
72
33
0
0
66
0.92
12819314--12819445
44
3.0
44
82
5
158
44
13
18
22
1.85
12819581--12819646
33
2.0
33
100
0
132
36
9
27
27
1.87
12820764--12820816
22
2.4
22
81
6
63
39
0
5
54
1.24
12827361--12827491
44
2.9
45
80
2
156
29
20
24
25
1.99
12827504--12828531
132
7.8
132
89
1
1456
29
17
24
28
1.97
12827507--12828376
44
19.8
44
66
18
206
30
16
24
28
1.97
12828297--12828396
44
2.3
43
81
5
119
27
21
24
28
1.99
12829128--12829152
13
1.9
13
100
0
50
24
0
44
32
1.54
12829275--12829426
72
2.1
73
96
2
279
42
20
11
26
1.85
12829432--12829538
11
10.4
11
72
23
65
58
0
3
37
1.16
12829464--12829527
30
2.1
29
86
11
85
60
0
3
35
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12829405--12829556
41
3.7
41
88
6
218
60
0
2
36
1.15
12829459--12829556
11
9.6
11
68
27
58
60
0
3
36
1.13
12829482--12829567
17
4.6
17
71
18
64
59
0
2
38
1.10
12830742--12830794
22
2.4
22
81
6
63
39
0
5
54
1.24
12832021--12832233
67
3.2
65
83
7
245
38
18
20
22
1.94
12834444--12834499
20
2.7
22
81
10
64
39
17
17
25
1.92
12841968--12842189
110
2.0
110
100
0
444
27
23
18
31
1.97
12851912--12852003
46
2.0
46
93
0
157
26
22
19
31
1.98
12853754--12853783
6
5.2
6
92
8
53
83
0
0
16
0.65
12853754--12853783
11
2.6
12
94
5
53
83
0
0
16
0.65
12857477--12857569
46
2.0
46
95
0
168
37
11
21
29
1.89
12862041--12862067
12
2.2
12
100
0
54
22
14
29
33
1.94
12863929--12864010
42
2.0
42
92
0
137
48
8
12
30
1.70
12866396--12866436
20
2.0
21
85
4
57
46
0
0
53
1.00
12866398--12866443
24
1.9
24
86
8
67
47
0
0
52
1.00
12867452--12867489
16
2.2
18
86
9
53
23
10
0
65
1.23
12872161--12872419
128
2.0
129
92
1
430
29
24
12
33
1.92
12883638--12883683
20
2.3
20
100
0
92
13
30
4
52
1.59
12887754--12887802
19
2.5
19
93
3
71
53
12
4
30
1.57
12887794--12887836
13
3.1
14
84
12
54
60
0
0
39
0.97
12890301--12890353
3
17.7
3
82
0
52
58
1
5
33
1.32
12892573--12892628
3
18.3
3
96
3
103
32
0
1
66
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12899030--12899083
7
8.0
7
75
8
58
66
0
16
16
1.25
12899030--12899088
20
2.9
20
84
2
82
66
0
18
15
1.26
12900356--12900687
44
7.6
42
69
12
138
29
21
22
26
1.99
12900484--12900687
44
4.6
44
70
9
162
28
20
23
27
1.99
12900353--12900548
85
2.3
86
77
7
202
29
21
21
27
1.99
12900527--12900718
44
4.3
46
68
15
148
28
21
21
28
1.99
12900487--12900742
134
1.9
133
91
2
415
29
20
23
26
1.99
12900706--12900867
44
3.7
44
74
6
132
29
24
23
22
1.99
12900707--12900867
87
1.9
87
81
5
200
29
24
23
22
1.99
12902405--12902460
3
18.3
3
96
3
103
32
0
1
66
1.03
12902742--12902814
10
7.7
10
71
11
55
43
9
1
45
1.45
12904474--12904517
23
1.9
23
81
9
54
36
15
4
43
1.68
12905575--12905829
69
3.7
69
77
4
255
33
24
21
21
1.97
12905575--12905829
35
7.4
35
69
9
157
33
24
21
21
1.97
12905838--12905885
20
2.4
20
92
0
78
39
25
0
35
1.56
12906406--12906669
69
3.8
69
87
0
357
30
22
23
23
1.99
12906394--12906660
35
7.7
35
68
8
172
31
22
23
23
1.98
12906426--12906669
35
7.1
35
68
8
176
31
22
23
22
1.99
12906676--12906723
20
2.4
20
96
0
87
39
27
0
33
1.57
12907123--12907152
2
15.0
2
92
0
51
46
0
0
53
1.00
12908134--12908582
44
10.4
43
72
6
273
31
19
20
28
1.97
12908134--12908539
85
4.7
85
74
7
336
32
19
20
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12908134--12908490
129
2.8
129
96
0
642
32
19
20
27
1.97
12908748--12909012
45
5.9
45
70
7
182
24
21
23
29
1.99
12908743--12909007
89
3.0
89
79
7
313
24
21
24
29
1.99
12910229--12910280
20
2.6
20
87
6
70
1
21
0
76
0.87
12910225--12910288
6
9.7
7
79
14
57
1
21
0
76
0.87
12910228--12910284
10
5.3
10
78
21
62
1
21
0
77
0.86
12910246--12910299
26
2.1
27
86
10
78
0
22
0
77
0.76
12910282--12910307
11
2.4
11
100
0
52
0
23
0
76
0.78
12924357--12924453
11
9.4
11
68
18
57
38
4
0
57
1.18
12924341--12924453
41
2.8
39
78
7
127
35
3
0
61
1.14
12924368--12924462
31
3.1
29
81
13
111
35
3
0
61
1.12
12924368--12924462
30
3.1
30
85
7
122
35
3
0
61
1.12
12927633--12927701
35
2.0
35
88
0
102
23
4
28
43
1.73
12929502--12929538
20
1.9
19
89
10
58
45
16
16
21
1.84
12931138--12931229
9
10.4
9
85
4
134
34
8
21
34
1.84
12931138--12931230
26
3.5
26
91
1
150
34
8
21
35
1.84
12931138--12931229
35
2.6
35
87
5
141
34
8
21
34
1.84
12932349--12932445
21
4.7
21
92
2
153
40
9
12
38
1.75
12932437--12932481
21
2.0
23
83
8
58
37
4
13
44
1.64
12932849--12932877
15
1.9
15
100
0
58
27
0
6
65
1.18
12933326--12933370
19
2.3
19
82
14
56
24
0
4
71
1.05
12939025--12939807
44
18.1
43
70
14
357
27
20
23
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12939016--12939808
217
3.7
217
91
0
1273
27
20
23
28
1.99
12939879--12939989
44
2.5
43
79
12
127
33
19
20
26
1.97
12940300--12940396
21
4.7
21
89
2
144
41
8
12
38
1.73
12940388--12940432
21
2.0
23
83
8
58
37
4
13
44
1.64
12941968--12941997
2
15.0
2
100
0
60
50
0
0
50
1.00
12942808--12942856
25
2.0
25
83
0
62
38
0
16
44
1.48
12943248--12943332
43
2.0
42
88
6
127
50
1
24
23
1.56
12944145--12944179
17
2.1
17
100
0
70
28
5
17
48
1.69
12949580--12949698
42
2.8
42
92
2
195
31
21
23
22
1.98
12949711--12949802
42
2.2
43
84
7
118
31
29
16
22
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141