genome.fa.s1.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  124  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39622770--39622877	44	2.5	44	81	0	117	33	19	17	29	1.95
39623046--39623354	136	2.3	136	88	2	442	31	18	19	31	1.96
39625045--39625094	3	17.3	3	75	8	50	38	4	0	58	1.17
39625384--39625428	6	7.5	6	100	0	90	51	15	0	33	1.44
39626372--39626423	18	2.9	18	94	2	88	42	11	11	34	1.77
39628819--39628844	12	2.2	12	100	0	52	0	15	0	84	0.62
39640226--39640278	7	7.4	7	82	18	65	69	0	15	15	1.19
39640229--39640269	8	5.5	8	88	11	61	75	0	12	12	1.05
39640230--39640260	13	2.3	13	94	5	53	74	0	12	12	1.08
39640226--39640278	21	2.5	21	93	3	88	69	0	15	15	1.19
39641593--39642037	50	8.9	50	72	7	357	34	23	18	24	1.96
39641567--39642037	100	4.7	100	90	0	710	33	23	18	24	1.97
39643491--39643537	3	15.3	3	78	12	51	34	4	0	61	1.15
39643491--39643533	17	2.5	17	88	0	68	34	4	0	60	1.17
39644795--39644929	47	2.9	46	76	10	109	56	2	7	33	1.42
39644869--39644927	24	2.5	22	84	10	73	62	3	3	30	1.28
39645739--39645777	19	2.0	20	95	5	71	15	35	5	43	1.69
39646463--39646580	54	2.2	55	98	1	229	59	3	1	35	1.24
39646637--39646680	22	2.1	22	87	8	65	25	2	4	68	1.20
39647926--39647982	18	3.1	18	82	14	64	21	31	0	47	1.51
39649252--39650018	383	2.0	384	99	0	1527	29	12	17	39	1.87
39658261--39658515	28	9.4	28	72	13	210	43	23	0	27	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39658264--39658337	27	3.0	23	76	16	85	45	25	0	28	1.53
39658300--39658418	29	4.1	29	83	4	168	43	30	0	25	1.60
39658329--39658375	23	2.0	23	95	0	85	42	31	0	25	1.55
39658264--39658418	58	2.9	53	83	10	190	44	27	0	27	1.59
39658430--39658501	23	2.9	23	89	10	99	47	20	1	30	1.59
39658458--39658508	23	2.2	23	92	0	84	47	23	0	29	1.52
39675644--39675695	24	2.2	24	85	0	68	53	9	3	32	1.51
39678233--39678268	18	1.9	19	88	5	56	13	8	0	77	0.98
39679077--39679115	18	2.1	19	86	13	55	38	23	12	25	1.90
39680815--39680884	36	1.9	36	88	8	106	48	11	12	27	1.75
39680860--39681170	18	17.5	16	73	17	149	43	10	12	32	1.77
39680871--39681170	36	8.4	35	72	14	188	43	10	12	34	1.76
39680871--39680962	17	5.3	17	77	10	71	41	11	10	35	1.77
39680871--39681114	18	13.4	18	77	11	150	44	9	11	34	1.73
39680860--39681170	35	8.8	33	72	15	105	43	10	12	32	1.77
39681653--39681751	8	11.9	8	75	16	94	0	19	0	80	0.71
39681650--39681753	17	6.0	17	73	17	90	0	20	0	79	0.73
39681679--39681752	24	3.1	24	85	12	107	0	17	0	82	0.67
39681651--39681743	9	9.6	10	74	22	65	0	20	0	79	0.73
39681652--39681753	10	10.4	10	74	13	70	0	18	0	81	0.69
39682078--39682149	3	24.0	3	88	8	103	0	30	0	69	0.89
39682065--39682149	9	9.0	9	86	8	89	0	28	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39682497--39682622	30	4.2	30	76	9	116	40	4	16	38	1.70
39682620--39682655	9	4.0	9	88	0	54	13	0	2	83	0.76
39682814--39683577	79	9.7	79	82	8	877	35	20	17	27	1.95
39682793--39683569	314	2.5	309	84	5	965	35	19	17	27	1.94
39692514--39692648	50	2.7	50	88	1	189	19	29	24	26	1.98
39692743--39692772	13	2.3	13	94	0	51	50	13	3	33	1.58
39695555--39695632	34	2.3	34	80	6	86	39	0	15	44	1.46
39695567--39695646	34	2.4	30	77	20	88	42	0	8	48	1.34
39695567--39695641	33	2.3	31	79	18	89	41	0	9	49	1.35
39695730--39695969	126	1.9	124	84	5	322	37	18	16	27	1.92
39698989--39699037	25	1.9	26	87	4	73	63	4	0	32	1.13
39700307--39700331	13	1.9	13	100	0	50	32	4	24	40	1.73
39701459--39701573	43	2.7	42	84	1	149	26	19	25	28	1.98
39703364--39703410	22	2.1	22	100	0	94	25	34	17	23	1.96
39707446--39707637	44	4.2	44	81	9	231	30	22	16	30	1.95
39707474--39707629	51	3.2	50	78	12	180	29	23	14	32	1.95
39707430--39707637	95	2.3	88	84	5	254	29	23	14	32	1.95
39718524--39718573	25	2.0	25	96	0	91	36	10	0	54	1.34
39725110--39725161	25	2.1	24	82	10	61	67	1	1	28	1.12
39725346--39725377	12	2.6	13	90	9	50	50	0	21	28	1.49
39727990--39728027	19	2.0	20	89	5	60	44	0	5	50	1.24
39729795--39729819	7	3.6	7	100	0	50	28	0	12	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39730469--39730503	18	1.9	18	94	0	61	25	31	8	34	1.86
39731611--39731652	17	2.4	18	80	4	50	42	9	2	45	1.49
39731348--39731635	116	2.5	116	96	0	524	39	9	7	43	1.65
39736056--39736408	126	2.8	125	84	3	469	33	20	15	30	1.93
39737082--39737132	26	1.9	27	88	4	77	27	5	1	64	1.27
39740300--39740326	3	9.0	3	100	0	54	33	0	33	33	1.58
39742369--39742410	17	2.5	17	96	0	75	76	2	21	0	0.90
39744811--39744867	4	14.2	4	88	0	87	26	3	26	43	1.70
39751914--39752042	66	2.0	66	100	0	258	27	8	10	53	1.64
39752032--39752121	44	2.0	45	97	2	173	35	2	2	60	1.22
39760539--39760662	36	3.4	35	76	8	124	30	21	5	41	1.76
39764037--39764118	33	2.6	32	90	5	123	30	17	2	50	1.59
39766146--39766202	25	2.3	25	84	0	69	40	19	21	19	1.92
39769820--39769861	21	2.0	20	86	4	57	42	2	0	54	1.13
39771115--39771517	41	9.6	41	81	4	410	21	18	26	34	1.96
39771151--39771472	84	3.8	84	96	0	581	20	17	26	35	1.94
39774419--39774488	35	2.0	35	100	0	140	25	8	20	45	1.79
39774877--39774985	43	2.5	43	86	0	155	21	17	23	37	1.94
39774905--39775088	42	4.3	42	79	4	190	23	17	21	38	1.93
39775858--39775888	16	1.9	16	93	0	53	35	0	22	41	1.54
39783277--39783367	9	10.0	9	68	14	53	27	1	3	68	1.12
39783293--39783332	20	2.0	20	95	0	71	27	0	2	70	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39783312--39783374	26	2.4	26	75	0	63	33	1	3	61	1.21
39786787--39786831	21	2.3	20	85	14	60	57	0	0	42	0.98
39786797--39786840	21	2.1	21	83	8	54	54	0	0	45	0.99
39787357--39787403	20	2.4	20	85	3	60	31	4	4	59	1.36
39787357--39787401	19	2.4	19	85	7	56	31	4	4	60	1.37
39792751--39792842	37	2.5	37	85	0	130	38	20	9	31	1.85
39796844--39796874	2	15.5	2	100	0	62	51	0	0	48	1.00
39797838--39798338	240	2.1	242	87	2	720	33	12	17	36	1.88
39808603--39809009	218	1.9	212	87	7	597	30	23	16	29	1.96
39813428--39813484	23	2.4	23	80	11	71	38	1	1	57	1.19
39816892--39816941	13	3.7	14	80	15	61	36	6	2	56	1.36
39827964--39827991	2	14.0	2	100	0	56	50	0	0	50	1.00
39830554--39830609	27	2.1	27	96	0	103	39	26	16	17	1.91
39831152--39831178	13	2.1	13	100	0	54	22	22	18	37	1.95
39831543--39831634	44	2.1	45	85	2	123	25	23	19	31	1.98
39831768--39832115	88	4.0	88	85	1	448	20	25	26	27	1.99
39831800--39832115	175	1.8	176	86	0	463	21	25	26	27	1.99
39832888--39832968	26	3.2	26	81	5	96	34	23	24	17	1.96
39836155--39836189	18	1.9	18	88	0	52	31	2	14	51	1.57
39841511--39841556	13	3.4	14	79	11	51	56	10	8	23	1.61
39844090--39844176	42	2.1	41	87	6	122	14	17	19	48	1.81
39846800--39846840	21	2.0	21	85	0	55	17	17	19	46	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39849670--39849729	27	2.2	27	79	5	68	11	5	66	16	1.40
39849650--39849704	21	2.6	21	79	0	65	12	7	58	21	1.59
39849948--39850039	21	4.2	20	73	20	60	9	6	66	17	1.42
39849969--39850063	42	2.3	42	85	3	120	12	5	63	18	1.47
39849969--39850063	21	4.6	20	78	8	91	12	5	63	18	1.47
39853455--39853506	21	2.5	21	83	0	59	11	7	53	26	1.63
39853502--39853581	21	3.5	21	80	18	97	10	3	65	21	1.39
39853474--39853560	27	3.2	27	85	0	102	8	5	62	24	1.45
39853498--39853581	27	3.3	27	74	19	99	9	3	64	22	1.39
39856185--39856224	17	2.4	17	83	4	55	50	0	2	47	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141