genome.fa.s1.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  136  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44098770--44098897	64	2.0	64	96	0	238	40	26	6	26	1.79
44106198--44106322	64	2.0	64	100	0	250	40	24	6	28	1.80
44109357--44110730	685	2.0	685	99	0	2723	34	15	15	34	1.89
44130332--44130446	19	5.7	21	79	12	62	40	13	6	39	1.72
44130332--44130389	22	2.6	22	81	7	64	41	17	5	36	1.72
44130368--44130459	19	4.8	19	91	0	148	36	13	9	40	1.77
44130841--44131313	173	2.7	171	84	4	549	28	23	19	28	1.98
44130976--44131444	217	2.2	218	82	7	530	28	23	19	28	1.98
44131071--44131353	89	3.2	85	71	17	233	28	24	19	27	1.99
44130893--44131434	44	12.5	44	69	14	204	28	23	19	28	1.98
44131067--44131439	173	2.2	172	80	7	391	28	24	19	27	1.99
44139837--44139882	24	1.9	24	86	0	65	10	26	17	45	1.81
44142454--44142495	21	2.0	22	86	13	61	30	2	0	66	1.04
44142461--44142508	22	2.1	23	85	14	64	33	0	0	66	0.92
44143718--44143752	6	5.8	6	96	0	61	28	20	34	17	1.95
44148668--44148692	7	3.6	7	100	0	50	28	0	0	72	0.86
44154685--44155181	264	1.9	264	91	0	823	37	20	6	35	1.78
44161568--44162096	265	2.0	265	93	0	916	41	16	12	29	1.85
44162061--44162127	33	2.0	34	82	8	84	28	23	23	23	2.00
44162101--44162159	28	2.1	28	96	0	109	28	20	23	27	1.99
44162262--44162368	26	4.1	26	87	0	160	38	23	19	18	1.93
44162496--44162637	27	5.3	27	78	3	133	19	17	21	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44170142--44170191	26	1.9	26	100	0	100	38	26	20	16	1.92
44170342--44170496	27	5.7	27	81	6	170	22	17	20	40	1.92
44172569--44172638	35	2.0	35	100	0	140	20	22	14	42	1.88
44185512--44185565	26	2.0	28	85	7	76	57	1	38	1	1.20
44185514--44185591	31	2.4	32	87	4	104	58	1	37	2	1.20
44188588--44188668	28	2.9	28	90	0	135	55	8	7	28	1.57
44191625--44191682	31	1.9	31	92	3	100	13	34	22	29	1.93
44192174--44192227	25	2.2	25	83	6	65	24	12	44	18	1.85
44196642--44196694	26	2.0	27	88	3	81	22	20	24	32	1.98
44205114--44205222	37	3.0	37	77	10	125	30	32	6	31	1.83
44205114--44205222	35	3.1	35	82	2	128	30	32	6	31	1.83
44205436--44205534	43	2.3	43	85	0	126	32	24	16	27	1.96
44205469--44205567	43	2.3	43	85	0	126	36	25	17	21	1.94
44210417--44210462	22	2.1	22	95	0	83	45	6	26	21	1.76
44221844--44221894	26	2.0	26	96	0	93	33	3	7	54	1.47
44225569--44225598	14	2.1	14	93	0	51	36	43	0	20	1.52
44225519--44225615	21	4.6	21	72	7	54	39	40	0	20	1.53
44225510--44225606	50	1.9	50	85	8	135	41	36	0	22	1.54
44225673--44225721	7	7.0	7	84	9	55	46	30	0	22	1.52
44225611--44225714	22	4.8	21	69	14	68	47	26	1	24	1.63
44225539--44225721	21	8.6	21	70	13	79	45	31	1	22	1.60
44226079--44226244	40	4.1	40	89	3	235	24	21	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44233214--44233432	27	8.3	27	76	8	144	29	24	15	31	1.96
44235433--44237484	815	2.5	815	97	0	3865	31	18	17	32	1.94
44254659--44254758	26	3.9	26	81	5	114	39	11	20	30	1.87
44254659--44254758	50	2.0	52	84	7	134	39	11	20	30	1.87
44255520--44255678	73	2.2	74	96	3	297	33	5	18	42	1.73
44258670--44258710	21	2.0	21	90	0	64	31	9	34	24	1.88
44260492--44260534	22	2.0	22	82	17	54	51	25	6	16	1.69
44267010--44267173	64	2.5	66	80	3	170	33	18	23	24	1.97
44268794--44268853	30	2.0	30	100	0	120	30	10	10	50	1.69
44273278--44273433	76	2.1	76	96	0	285	28	17	18	35	1.94
44274456--44274510	27	2.0	27	100	0	110	49	25	10	14	1.76
44280395--44280530	66	2.1	66	86	5	186	36	27	19	16	1.93
44280453--44280611	41	3.9	41	85	1	194	38	25	19	16	1.92
44287530--44287688	41	3.9	41	87	1	223	35	16	28	20	1.94
44292522--44292821	148	2.0	147	92	2	469	29	24	15	31	1.95
44295330--44295359	16	1.9	16	93	6	53	50	20	0	30	1.49
44298438--44298523	34	2.5	34	81	5	93	27	1	33	37	1.65
44300670--44300700	14	2.2	14	94	0	53	61	9	6	22	1.50
44300683--44300774	28	3.3	28	87	6	134	54	7	6	31	1.54
44301367--44301589	51	4.4	51	89	0	331	28	24	15	31	1.95
44301565--44301603	14	2.8	14	96	0	69	20	35	7	35	1.81
44301562--44301608	21	2.2	21	84	0	58	23	31	8	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44301516--44301641	65	1.9	65	93	3	218	26	24	14	34	1.94
44307737--44307772	18	2.0	18	88	0	54	44	5	11	38	1.63
44309530--44309663	39	3.4	38	72	13	105	21	20	27	29	1.98
44321289--44321315	14	1.9	14	100	0	54	40	0	0	59	0.98
44322266--44322303	6	6.3	6	82	11	51	15	0	2	81	0.80
44329582--44329628	23	2.0	23	100	0	94	25	12	12	48	1.77
44340832--44340869	17	2.2	17	90	0	58	34	36	7	21	1.82
44342622--44342660	19	2.0	19	85	5	51	30	5	12	51	1.62
44358816--44358853	19	2.0	19	85	10	51	21	42	0	36	1.53
44359955--44359987	15	2.1	16	88	5	50	24	6	6	63	1.40
44366235--44366272	19	2.0	19	85	10	51	21	42	0	36	1.53
44368577--44368611	14	2.5	14	86	13	54	51	8	0	40	1.33
44369075--44369120	23	2.0	24	86	4	67	30	2	13	54	1.50
44370597--44370731	61	2.2	61	86	2	191	51	5	1	41	1.35
44370636--44370709	11	6.7	11	70	21	57	55	5	0	39	1.23
44373699--44373747	24	2.0	24	100	0	98	16	8	24	51	1.71
44375797--44375854	9	6.4	9	93	0	80	41	25	8	24	1.83
44375797--44375854	18	3.2	18	90	0	89	41	25	8	24	1.83
44375886--44375928	20	2.2	20	83	8	52	25	0	6	67	1.15
44376279--44376312	11	3.1	11	91	0	59	2	23	55	17	1.55
44390061--44390088	14	2.0	14	100	0	56	14	14	28	42	1.84
44390392--44390459	9	7.4	9	81	3	82	27	13	19	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44391569--44391618	21	2.4	21	86	0	64	16	16	30	38	1.90
44392925--44392958	15	2.2	16	89	5	52	76	11	0	11	1.02
44393377--44393455	41	1.9	41	100	0	158	48	2	12	36	1.55
44395768--44395821	25	2.2	25	83	6	65	57	12	7	22	1.60
44398666--44399052	3	129.0	3	100	0	774	66	0	0	33	0.92
44399679--44399710	15	2.1	15	94	0	55	56	0	0	43	0.99
44406451--44406601	75	2.0	75	100	0	302	41	10	30	17	1.83
44410423--44410451	2	14.5	2	100	0	58	48	0	0	51	1.00
44418102--44418127	5	5.2	5	100	0	52	19	19	19	42	1.90
44419632--44419675	17	2.4	19	85	14	58	36	0	4	59	1.18
44427040--44427119	35	2.3	35	84	4	99	31	0	20	48	1.49
44427141--44427216	34	2.3	33	84	8	111	40	0	10	48	1.38
44427276--44427544	126	2.1	126	89	2	416	36	17	15	30	1.91
44430575--44430621	25	2.0	24	88	12	71	59	0	0	40	0.97
44430584--44430666	38	2.2	39	85	10	109	61	3	1	33	1.21
44431013--44431047	17	2.0	18	88	5	54	40	8	25	25	1.84
44432613--44432651	20	1.9	21	84	5	53	66	0	2	30	1.05
44432812--44432875	29	2.2	29	88	2	92	39	4	31	25	1.76
44436723--44436846	21	6.1	21	86	5	166	40	12	14	33	1.83
44436723--44436846	61	2.0	61	96	0	230	40	12	14	33	1.83
44436722--44436850	40	3.2	40	89	6	190	40	12	15	31	1.84
44439463--44439507	22	2.0	22	100	0	90	37	4	26	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44441618--44441656	21	1.9	21	84	5	53	23	10	5	61	1.48
44445722--44445824	37	2.8	38	85	7	142	26	16	17	39	1.90
44446645--44446676	15	2.1	15	100	0	64	43	25	6	25	1.77
44451766--44451845	29	2.7	30	78	3	90	32	11	18	37	1.87
44457642--44457717	40	1.9	40	97	0	143	32	1	17	48	1.55
44459494--44459587	9	10.4	9	85	4	127	25	11	23	39	1.88
44476386--44476415	14	2.1	14	93	0	51	60	0	0	40	0.97
44480655--44480688	17	2.0	17	88	0	50	52	2	5	38	1.41
44481522--44481725	41	5.0	41	85	0	273	23	26	21	28	1.99
44481533--44481725	82	2.4	82	90	0	305	22	26	21	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141