genome.fa.s1.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  32  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10754869--10755282	27	15.4	27	83	1	456	23	21	19	35	1.96
10754884--10755283	81	4.9	81	84	0	512	23	20	20	35	1.96
10759679--10759713	10	3.6	10	92	3	54	62	5	0	31	1.18
10768255--10768279	6	4.2	6	100	0	50	36	0	16	48	1.46
10790079--10790120	20	2.1	20	90	0	66	45	4	0	50	1.23
10801135--10801204	25	2.7	26	84	2	97	44	1	0	54	1.09
10801135--10801205	26	2.7	27	80	8	94	45	1	0	53	1.09
10808004--10808059	20	2.8	20	88	0	76	48	0	30	21	1.51
10814941--10815004	23	2.8	23	87	0	92	31	25	28	15	1.96
10816151--10816236	22	3.9	22	82	0	100	33	20	27	17	1.95
10816153--10816236	44	1.9	44	87	0	123	33	21	28	16	1.95
10818502--10818626	37	3.5	35	85	3	160	40	16	17	25	1.90
10818502--10818626	36	3.5	36	85	5	164	40	16	17	25	1.90
10822549--10822595	19	2.5	19	96	0	85	17	10	6	65	1.43
10829687--10829726	17	2.4	17	95	0	71	25	22	40	12	1.89
10831866--10831990	66	1.9	66	83	3	162	24	19	21	34	1.96
10834691--10834815	35	3.6	35	85	2	135	27	12	16	44	1.83
10834955--10835036	31	2.6	31	78	0	101	19	24	32	23	1.97
10839191--10839223	6	5.5	6	100	0	66	0	15	0	84	0.61
10839193--10839233	18	2.3	18	87	8	57	0	19	0	80	0.71
10845336--10845385	25	2.0	25	88	0	73	40	18	16	26	1.90
10847843--10847876	11	3.0	11	86	4	50	35	2	8	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10852151--10852198	16	2.8	18	81	15	57	27	2	4	66	1.21
10864337--10864397	31	2.0	31	90	6	97	37	1	0	60	1.07
10866874--10866902	14	2.1	14	100	0	58	37	6	20	34	1.80
10869457--10869494	19	2.0	19	100	0	76	42	21	10	26	1.85
10877314--10877393	40	2.0	41	85	5	108	26	7	20	46	1.77
10877417--10877465	12	3.7	14	72	22	52	57	4	16	22	1.56
10877612--10877645	11	3.1	11	100	0	68	35	17	17	29	1.93
10880903--10880945	22	2.0	22	86	9	61	25	30	20	23	1.99
10890401--10890431	12	2.6	12	94	0	53	22	41	29	6	1.78
10891878--10891918	11	3.7	11	83	0	55	26	4	0	68	1.10
10891898--10892022	51	2.5	50	73	17	123	43	4	3	49	1.37
10894793--10894842	23	2.2	23	100	0	100	32	28	8	32	1.86
10897689--10897786	46	2.1	46	86	3	135	28	27	10	33	1.89
10898707--10898758	24	2.2	24	85	0	68	36	3	5	53	1.43
10900569--10900604	9	4.0	9	86	13	56	75	0	25	0	0.81
10900569--10900604	13	2.7	13	86	4	54	75	0	25	0	0.81
10901274--10901322	25	2.0	25	83	0	62	38	0	16	44	1.48
10901719--10901790	25	2.9	25	89	0	108	54	2	23	19	1.57
10901787--10901831	19	2.3	20	85	11	67	53	0	22	24	1.46
10905736--10906005	113	2.4	113	78	6	260	29	18	17	34	1.94
10906444--10906527	7	12.0	7	73	8	55	16	0	38	45	1.48
10906429--10906482	27	2.0	27	82	7	65	18	0	31	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10906601--10906633	14	2.4	14	94	0	57	15	15	24	45	1.84
10908557--10908614	16	3.4	16	82	13	80	34	5	15	44	1.69
10909847--10910193	9	40.4	9	68	16	166	43	18	1	36	1.60
10909849--10910193	25	13.8	25	77	9	249	43	18	1	36	1.60
10909956--10910149	34	5.5	34	71	19	146	43	15	2	38	1.59
10909961--10910038	41	1.9	41	91	0	129	42	14	3	39	1.63
10910042--10910132	43	2.2	41	82	7	103	46	18	1	34	1.57
10909882--10910180	16	18.0	16	68	13	119	44	18	1	35	1.58
10912168--10912406	42	5.6	43	80	4	216	27	20	24	27	1.99
10916869--10916898	6	5.2	6	96	4	53	83	0	16	0	0.65
10917712--10917826	44	2.6	44	83	14	157	23	20	29	26	1.98
10922313--10922500	50	3.6	50	83	5	216	28	21	27	22	1.99
10922361--10922555	50	3.9	50	81	1	194	28	23	28	20	1.99
10922361--10922542	100	1.8	100	80	2	222	28	23	28	19	1.98
10928432--10928539	44	2.5	44	79	13	125	25	19	26	27	1.99
10932824--10932848	9	2.8	9	100	0	50	24	12	0	64	1.27
10935062--10935272	54	3.9	54	80	0	233	40	21	13	25	1.89
10935076--10935272	81	2.4	82	79	8	233	40	22	12	24	1.88
10935049--10935273	27	8.3	27	78	6	188	40	21	12	25	1.89
10935049--10935286	54	4.4	54	77	4	219	40	20	13	25	1.89
10935266--10935343	27	2.9	26	76	3	75	33	19	20	26	1.96
10935457--10935518	24	2.6	24	87	5	90	19	3	20	56	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10935467--10935505	11	3.1	14	72	27	50	20	5	17	56	1.60
10935641--10935694	26	2.1	26	85	0	72	18	20	24	37	1.94
10935694--10935778	32	2.7	32	81	5	93	21	21	21	36	1.95
10940533--10940593	32	1.9	32	96	0	113	34	22	4	37	1.76
10940880--10940937	30	1.9	30	92	0	98	27	22	25	24	2.00
10941292--10941568	27	10.3	27	84	7	296	20	18	20	40	1.91
10941293--10941568	54	5.1	53	84	3	331	19	18	20	40	1.91
10946864--10946949	28	2.9	30	86	3	104	27	23	24	24	2.00
10947309--10947467	54	2.9	53	79	5	158	22	18	19	39	1.92
10947331--10947477	27	5.4	27	80	0	159	21	17	19	42	1.89
10952081--10952122	6	6.8	6	82	15	50	0	54	0	45	0.99
10952079--10952122	12	3.5	13	84	9	65	0	54	0	45	0.99
10952081--10952119	18	2.2	18	90	9	62	0	56	0	43	0.99
10952079--10952122	19	2.4	19	85	14	65	0	54	0	45	0.99
10952182--10952232	25	2.0	25	85	7	68	3	31	3	60	1.33
10954715--10954754	20	2.0	20	100	0	80	45	15	10	30	1.78
10954738--10954777	14	2.9	14	88	0	53	40	17	7	35	1.78
10954705--10954769	34	1.9	33	84	9	87	43	13	9	33	1.76
10958431--10958481	3	17.0	3	100	0	102	33	0	0	66	0.92
10958772--10959181	150	2.7	150	85	7	529	43	3	10	41	1.57
10959708--10959754	24	1.9	24	83	12	60	31	6	6	55	1.51
10961788--10961827	21	1.9	21	85	10	55	32	5	2	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10971368--10971547	95	1.9	95	81	2	218	34	18	20	27	1.95
10973960--10974063	52	2.0	52	92	0	172	27	15	12	44	1.82
10975072--10975130	27	2.2	27	84	6	75	22	15	28	33	1.94
10980239--10980272	11	3.0	11	86	4	50	35	2	11	50	1.54
10981551--10981603	20	2.8	19	81	18	67	41	1	1	54	1.22
10985927--10986031	29	3.6	28	76	10	113	21	29	12	36	1.90
10985871--10986066	58	3.4	58	85	6	245	25	26	11	36	1.90
10985961--10986175	29	7.4	29	78	4	236	24	27	12	34	1.92
10985961--10986175	87	2.5	87	92	0	349	24	27	12	34	1.92
10989599--10989632	15	2.3	15	90	5	52	73	11	2	11	1.20
10990793--10991645	37	23.5	35	76	10	409	24	22	15	37	1.93
10990785--10991652	73	11.9	72	80	8	745	25	21	15	37	1.93
10990785--10991645	36	23.7	36	77	11	726	25	21	15	37	1.93
10991223--10991652	77	5.7	77	92	2	599	26	21	16	36	1.94
11001713--11001750	16	2.4	17	86	8	53	60	0	21	18	1.36
11002405--11002467	30	2.1	30	90	0	99	30	17	20	31	1.96
11005206--11005276	21	3.4	21	64	0	61	28	0	23	47	1.52
11005328--11005418	34	2.7	34	84	5	130	42	0	16	40	1.48
11005322--11005430	34	3.3	32	80	10	123	41	0	13	44	1.44
11009244--11009286	18	2.4	18	88	0	59	41	9	25	23	1.84
11009338--11009407	30	2.3	30	87	0	104	8	17	41	32	1.79
11013426--11013471	22	2.1	22	84	15	60	58	4	0	36	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11014107--11014167	20	3.0	20	71	21	56	42	1	3	52	1.27
11014115--11014218	10	10.5	11	67	18	59	40	1	2	54	1.26
11014131--11014217	10	8.9	10	78	14	76	37	2	2	57	1.24
11014129--11014213	28	3.0	28	77	10	91	37	2	2	57	1.24
11015340--11015381	21	2.1	20	86	8	59	23	7	2	66	1.28
11015345--11015386	20	2.1	20	82	8	50	28	7	4	59	1.44
11015482--11015512	15	2.1	15	93	0	53	35	22	6	35	1.80
11023845--11024356	128	4.0	128	98	0	997	44	15	7	32	1.74
11027093--11027175	20	4.2	20	73	14	82	15	31	15	37	1.89
11032590--11032833	69	3.6	68	83	5	314	22	19	20	37	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141