genome.fa.s1.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  130  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41709535--41709577	21	2.0	21	100	0	86	41	18	9	30	1.82
41719599--41719643	21	2.1	22	91	4	74	22	2	4	71	1.15
41719617--41719653	16	2.2	17	90	4	58	21	0	5	72	1.04
41719601--41719674	37	2.0	37	82	10	89	27	1	4	67	1.16
41728878--41728925	5	10.0	5	91	8	82	41	0	0	58	0.98
41735402--41735454	24	2.2	25	80	12	67	35	7	5	50	1.54
41735415--41735468	24	2.2	24	90	0	81	37	5	7	50	1.54
41740211--41740264	27	2.0	27	85	0	72	38	12	16	31	1.87
41742857--41742895	19	2.0	21	85	10	55	43	30	7	17	1.77
41746083--41746112	12	2.4	13	94	5	53	26	36	0	36	1.57
41748003--41748078	37	2.1	37	87	5	109	35	13	18	32	1.89
41753401--41753427	13	2.1	13	100	0	54	44	14	7	33	1.73
41758447--41758628	94	1.9	94	98	0	355	37	8	4	48	1.56
41761228--41761270	22	2.0	22	86	4	61	44	0	4	51	1.22
41761273--41761308	17	2.2	16	90	5	54	38	5	2	52	1.39
41769576--41769612	19	1.9	19	88	0	56	78	2	5	13	1.03
41770148--41770492	171	2.0	172	99	0	683	38	8	10	42	1.71
41778913--41778964	25	2.1	25	82	3	61	42	1	0	55	1.10
41784399--41784655	129	2.0	129	92	0	433	33	18	12	35	1.89
41787748--41787777	3	10.0	3	92	0	51	33	3	0	63	1.11
41787832--41787902	35	2.0	35	83	0	88	40	11	1	46	1.48
41787904--41788005	44	2.3	44	77	6	98	37	12	2	47	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41787923--41788006	44	1.9	43	85	2	114	35	14	2	47	1.57
41788059--41788146	41	2.2	40	80	7	101	34	7	0	57	1.28
41788200--41788775	288	2.0	288	98	0	1127	28	11	11	48	1.75
41790338--41790381	19	2.3	20	84	7	56	27	20	11	40	1.86
41790668--41790760	46	2.0	46	97	0	177	31	35	7	25	1.84
41792480--41792565	7	12.0	7	72	16	61	76	9	0	13	1.01
41792474--41792565	22	4.2	21	79	10	96	77	8	0	14	0.99
41792474--41792564	28	3.2	27	79	13	101	76	8	0	14	1.00
41792483--41792581	14	7.4	14	75	21	88	75	10	1	13	1.09
41792490--41792568	28	2.8	27	86	9	113	77	10	0	12	1.00
41792468--41792567	37	2.7	37	85	3	139	77	9	0	14	1.00
41792468--41792580	37	3.1	37	78	16	119	75	9	0	14	1.10
41792474--41792573	17	6.2	17	74	22	74	77	9	0	14	1.00
41792586--41792625	6	6.3	6	88	11	62	80	0	20	0	0.72
41792588--41792624	7	5.6	7	87	6	51	83	0	16	0	0.64
41793383--41793434	7	7.0	7	83	16	61	73	0	13	13	1.11
41793382--41793425	7	5.6	8	89	10	65	77	0	11	11	1.00
41793383--41793434	23	2.3	22	90	9	79	73	0	13	13	1.11
41794666--41794803	43	3.2	43	68	11	129	23	20	26	28	1.99
41794607--41795392	86	9.1	86	88	5	812	28	20	24	25	1.99
41794623--41794928	43	7.2	42	64	16	128	27	22	24	25	2.00
41794619--41795392	174	4.5	172	86	4	902	28	21	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41794619--41795392	260	3.0	257	85	4	963	28	21	24	25	1.99
41795397--41796204	44	18.3	44	68	10	285	30	19	20	29	1.97
41795525--41796204	175	3.9	175	95	1	1161	30	19	20	29	1.97
41799298--41799515	9	24.0	9	67	19	80	28	5	4	61	1.35
41806009--41806046	19	2.0	20	84	5	51	55	13	5	26	1.59
41812728--41812780	26	2.0	27	85	3	72	39	5	16	37	1.73
41816107--41816342	118	2.0	118	100	0	472	38	11	4	45	1.59
41821105--41821159	22	2.5	21	83	16	60	61	0	0	38	0.96
41826683--41826746	32	2.0	32	93	0	110	17	20	23	39	1.92
41833207--41833240	4	8.5	4	86	0	50	67	0	5	26	1.13
41833794--41833841	13	3.5	13	78	16	53	64	2	4	29	1.23
41834411--41834436	12	2.2	12	100	0	52	84	0	0	15	0.62
41835160--41836595	718	2.0	709	89	5	2228	34	12	20	32	1.90
41838171--41838218	18	2.8	18	84	6	55	52	0	4	43	1.20
41843466--41843507	21	2.0	21	100	0	84	19	4	23	52	1.65
41853176--41853232	30	1.9	30	82	10	73	47	15	10	26	1.78
41854676--41854713	13	2.9	13	77	14	51	36	26	5	31	1.79
41858576--41858677	31	3.3	31	75	5	107	25	21	18	34	1.96
41863716--41863918	44	4.5	43	86	10	282	31	16	24	27	1.97
41863810--41863912	50	2.0	51	94	5	183	32	17	26	24	1.97
41871530--41871565	12	2.9	12	91	4	54	69	0	2	27	1.02
41873345--41873406	30	2.1	30	81	6	72	40	0	40	19	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41873448--41873484	9	4.1	9	92	0	65	29	10	13	45	1.77
41880922--41880979	29	2.0	28	83	3	71	37	10	18	32	1.85
41881140--41881192	9	5.8	9	80	4	61	20	41	1	35	1.64
41883380--41883535	77	2.0	78	98	1	305	32	8	7	50	1.62
41885782--41885820	16	2.4	16	86	4	51	46	5	17	30	1.70
41885792--41885825	16	2.1	16	100	0	68	35	5	23	35	1.79
41886950--41887043	47	2.0	47	97	0	179	39	8	11	40	1.72
41894368--41894402	15	2.4	15	90	4	54	62	0	2	34	1.10
41894939--41894992	23	2.2	25	87	12	78	42	1	0	55	1.10
41896631--41896665	15	2.4	15	90	4	54	62	0	2	34	1.10
41900723--41900827	53	2.0	53	98	1	201	48	11	10	29	1.72
41904150--41904195	23	2.0	23	84	12	60	23	6	6	63	1.43
41905703--41905739	6	5.8	6	90	9	56	16	0	2	81	0.81
41905703--41905739	19	1.9	19	94	0	65	16	0	2	81	0.81
41905697--41905746	13	3.8	13	81	7	57	24	0	2	74	0.93
41914644--41914703	24	2.4	26	78	18	65	48	0	3	48	1.18
41914979--41915089	55	2.0	55	96	0	204	37	9	7	45	1.63
41919416--41919464	24	2.0	24	100	0	98	12	20	16	51	1.76
41919615--41919640	11	2.4	11	100	0	52	7	34	11	46	1.69
41922096--41922131	7	5.0	7	86	6	54	19	11	0	69	1.18
41922097--41922134	11	3.5	11	79	13	51	21	7	0	71	1.11
41925368--41925441	31	2.4	31	84	6	89	29	18	8	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41925808--41925847	6	6.7	6	100	0	80	85	0	0	15	0.61
41925805--41925854	18	2.8	17	88	8	73	82	0	2	16	0.77
41929429--41929494	2	33.0	2	90	0	105	0	54	0	45	0.99
41932335--41932369	17	2.1	17	89	10	54	25	0	2	71	1.00
41941150--41941179	14	2.1	14	100	0	60	43	0	13	43	1.43
41944992--41945135	58	2.5	57	77	15	147	23	16	14	45	1.85
41951876--41951903	12	2.3	12	100	0	56	57	0	7	35	1.26
41951885--41951949	27	2.4	27	94	0	112	63	0	1	35	1.04
41968684--41968730	2	23.5	2	95	0	85	48	0	2	48	1.13
41971236--41971306	31	2.3	31	82	4	90	25	26	16	30	1.97
41972186--41972437	126	2.0	126	98	1	488	27	22	19	30	1.98
41974595--41974653	9	6.6	9	73	21	52	64	1	0	33	1.04
41986425--41986474	20	2.5	19	81	9	64	48	8	0	44	1.32
41986477--41986513	19	1.9	19	89	10	58	45	0	2	51	1.15
41987857--41988245	31	12.7	31	87	3	522	42	17	9	30	1.81
41987857--41988245	61	6.4	61	88	1	539	42	17	9	30	1.81
41987857--41988256	92	4.4	91	88	2	552	43	18	9	29	1.81
41988782--41988896	60	1.9	60	85	0	158	31	18	13	36	1.90
41990022--41990081	31	1.9	31	83	6	77	45	10	13	31	1.76
41991144--41991169	6	4.3	6	100	0	52	84	15	0	0	0.62
41991488--41991555	34	2.0	34	100	0	136	55	5	11	26	1.58
41991488--41991541	17	3.2	17	74	10	65	55	3	11	29	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41998812--41998836	13	1.9	13	100	0	50	48	12	8	32	1.69
41999146--41999182	16	2.4	16	90	4	58	59	5	2	32	1.34
41999535--41999692	19	7.7	19	67	21	79	55	13	0	31	1.43
41999509--41999867	27	14.0	27	68	20	171	54	13	1	31	1.46
41999637--41999700	8	7.2	8	74	19	56	56	14	1	28	1.47
41999601--41999867	46	5.9	46	76	14	227	53	13	1	31	1.48
41999601--41999971	19	17.3	19	65	27	110	54	13	1	31	1.46
41999509--41999946	153	2.9	153	98	0	840	54	13	0	31	1.45
41999790--41999853	8	7.2	8	74	19	56	56	14	1	28	1.47
41999902--41999967	21	3.2	21	82	10	91	59	12	0	28	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141