genome.fa.s1.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  128  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41055492--41055542	23	2.3	23	96	3	95	7	7	15	68	1.37
41058822--41058879	27	2.1	27	87	6	82	41	0	1	56	1.09
41058830--41058887	27	2.1	27	84	6	73	48	0	1	50	1.11
41059802--41059833	2	16.0	2	100	0	64	50	0	0	50	1.00
41062513--41062665	76	2.0	76	100	0	306	28	16	18	35	1.94
41067414--41067438	12	2.1	12	100	0	50	48	0	44	8	1.32
41076967--41076997	14	2.1	15	94	5	55	22	0	0	77	0.77
41084931--41084985	26	2.1	27	86	10	78	27	5	7	60	1.46
41094424--41094449	3	8.7	3	100	0	52	0	30	0	69	0.89
41103779--41104327	278	2.0	277	81	3	638	34	20	12	31	1.90
41104904--41104938	17	1.9	19	88	11	56	65	11	2	20	1.37
41105813--41105875	11	5.6	11	87	9	92	53	0	0	46	1.00
41105813--41105933	22	5.9	21	74	16	103	58	0	0	40	1.04
41105880--41105936	11	5.5	11	68	19	50	68	0	1	29	1.00
41120213--41120407	17	11.2	16	72	21	144	43	6	0	50	1.27
41120191--41120419	53	4.3	53	100	0	458	44	5	0	50	1.24
41120232--41120389	36	4.5	35	69	16	119	43	5	0	51	1.23
41121687--41121766	31	2.6	31	88	2	108	45	13	13	27	1.82
41123379--41123610	120	1.9	120	100	0	464	35	13	17	33	1.89
41123413--41123661	120	2.1	118	80	7	270	39	15	16	28	1.89
41126565--41126606	22	1.9	22	85	0	57	52	14	4	28	1.62
41132734--41132783	26	1.9	26	100	0	100	64	4	20	12	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41136645--41136670	4	6.5	4	100	0	52	23	0	0	76	0.78
41140012--41140064	26	2.0	26	88	0	79	35	35	15	13	1.86
41140055--41140098	22	2.0	22	95	0	79	40	20	13	25	1.89
41140028--41140253	26	8.8	26	83	3	244	34	28	16	20	1.95
41141419--41141518	37	2.6	39	84	6	123	30	26	18	26	1.98
41141610--41141663	18	3.1	17	84	7	72	33	20	0	46	1.51
41142178--41142240	29	2.1	30	80	13	69	42	25	1	30	1.64
41142250--41142290	20	2.0	20	86	13	57	46	14	0	39	1.45
41142634--41142681	18	2.7	18	87	6	62	54	4	0	41	1.20
41142767--41142838	33	2.2	32	85	11	94	54	6	0	38	1.28
41142897--41142953	29	2.0	29	82	6	71	50	3	1	43	1.29
41150007--41150073	33	2.0	33	94	0	116	71	0	10	17	1.13
41153179--41153207	2	14.5	2	100	0	58	51	0	0	48	1.00
41153444--41153482	20	2.0	20	85	5	53	46	15	0	38	1.46
41153553--41153604	20	2.5	20	76	14	52	46	17	3	32	1.66
41154077--41154134	29	2.0	29	96	0	107	43	24	1	31	1.64
41154752--41155244	241	2.0	242	92	3	810	34	13	15	37	1.86
41156063--41156091	14	2.1	14	100	0	58	41	0	0	58	0.98
41156115--41156225	3	36.3	3	71	22	65	30	4	1	63	1.25
41156141--41156194	29	2.0	29	85	10	78	35	3	0	61	1.14
41156200--41156227	11	2.5	11	100	0	56	28	0	7	64	1.20
41156250--41156289	20	2.0	20	95	0	71	32	2	5	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41156275--41156345	33	2.2	33	87	5	101	52	0	4	43	1.20
41157244--41157272	4	7.5	4	92	7	51	48	0	0	51	1.00
41169645--41169681	19	1.9	19	88	0	56	37	5	0	56	1.22
41169807--41169841	18	1.9	18	100	0	70	51	5	8	34	1.56
41170904--41171075	43	4.0	43	100	0	344	27	18	13	39	1.89
41171264--41171299	11	3.2	11	88	4	54	16	33	0	50	1.46
41171263--41171311	22	2.2	23	82	10	57	20	32	0	46	1.51
41171279--41171402	51	2.4	51	89	2	187	29	25	0	43	1.60
41191844--41192006	82	2.0	83	85	6	222	35	6	23	34	1.81
41193317--41193344	14	2.0	14	100	0	56	50	7	14	28	1.69
41196689--41196730	20	2.1	20	86	8	59	23	19	0	57	1.41
41209613--41209673	23	2.5	24	82	12	72	24	1	0	73	0.92
41209613--41209656	22	2.0	23	86	13	65	25	2	0	72	0.96
41209639--41209671	7	4.9	7	85	7	50	27	0	0	72	0.85
41211310--41211416	10	11.0	9	70	18	63	31	0	4	62	1.22
41211319--41211382	21	3.2	20	70	25	55	26	0	4	68	1.09
41211299--41211405	20	5.4	19	72	14	65	28	0	5	65	1.15
41212055--41212109	19	2.8	19	75	2	56	69	7	3	20	1.28
41212124--41212210	30	2.9	30	78	10	97	60	4	0	34	1.17
41212278--41212312	17	2.1	17	88	0	52	65	2	2	28	1.21
41212334--41212543	10	21.9	9	66	19	79	57	6	2	33	1.39
41213163--41213210	18	2.6	18	80	9	53	68	4	4	22	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41213393--41213446	22	2.4	21	84	12	63	31	3	9	55	1.49
41213438--41213536	47	2.1	47	80	14	105	32	1	5	61	1.24
41213506--41213577	19	3.8	18	73	10	63	29	4	0	66	1.10
41213478--41213584	10	11.3	9	69	17	58	31	2	1	63	1.19
41213554--41213594	20	2.1	20	86	4	57	24	2	0	73	0.96
41214625--41214711	9	9.6	9	71	23	51	62	3	0	34	1.12
41214622--41214664	20	2.2	20	91	4	70	60	9	0	30	1.28
41218714--41218747	17	2.0	17	100	0	68	23	47	0	29	1.52
41223425--41223552	31	4.2	31	64	14	77	53	2	2	41	1.26
41224018--41224060	22	2.0	22	90	9	70	41	16	4	37	1.69
41229558--41229596	16	2.4	16	91	0	60	48	2	12	35	1.55
41229831--41229856	13	2.0	13	100	0	52	61	7	0	30	1.24
41229913--41229975	3	21.3	3	90	3	101	68	3	0	28	1.05
41230908--41230955	25	2.0	24	87	4	69	6	4	43	45	1.48
41235097--41235189	3	31.3	3	77	10	93	27	3	2	66	1.18
41235106--41235132	14	1.9	14	100	0	54	22	0	3	74	0.98
41235449--41235487	16	2.4	16	87	8	53	43	0	7	48	1.31
41235461--41235493	8	4.1	8	92	0	57	39	0	9	51	1.34
41235945--41236346	108	3.8	107	89	4	564	30	16	18	34	1.93
41237759--41237805	19	2.5	19	86	6	60	25	19	10	44	1.82
41240392--41240462	8	8.3	9	92	6	87	77	7	0	15	0.97
41242309--41242922	88	7.0	88	94	1	1054	27	22	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41246300--41246924	88	7.1	88	96	0	1097	26	20	25	26	1.99
41257719--41257757	3	13.0	3	100	0	78	33	0	0	66	0.92
41262926--41262970	18	2.5	18	96	0	81	17	26	11	44	1.82
41269374--41269402	2	15.0	2	92	7	51	51	0	0	48	1.00
41269669--41269701	17	1.9	17	93	0	57	36	6	0	57	1.23
41272723--41272762	17	2.4	17	87	8	55	45	7	15	32	1.74
41272780--41272836	16	3.6	16	90	0	87	45	3	3	47	1.37
41272810--41272873	23	2.8	23	85	4	76	51	3	1	43	1.26
41274565--41274599	18	1.9	18	94	0	61	48	5	2	42	1.41
41274825--41275101	96	2.9	96	98	1	529	36	9	16	37	1.82
41278687--41278723	18	2.1	18	89	0	56	24	8	18	48	1.75
41281405--41281492	44	2.0	44	97	0	167	26	17	9	47	1.76
41288055--41288096	12	3.5	12	80	0	57	47	16	4	30	1.67
41288044--41288097	24	2.2	24	100	0	108	42	16	9	31	1.80
41318898--41318929	15	2.1	16	94	5	57	62	0	0	37	0.95
41322597--41322773	88	2.0	88	100	0	354	31	21	10	36	1.87
41325496--41325543	17	2.9	17	72	27	50	33	10	0	56	1.34
41326042--41326090	9	5.4	9	79	16	57	44	2	0	53	1.12
41327126--41327185	15	3.9	15	70	12	50	50	1	8	40	1.43
41327088--41327153	32	2.1	31	81	15	75	57	1	6	34	1.33
41327177--41327217	16	2.6	16	88	7	57	58	2	9	29	1.43
41327610--41327653	3	14.0	3	86	9	61	63	4	0	31	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41328419--41328456	19	2.0	19	89	0	58	68	5	18	7	1.34
41332119--41332158	20	2.0	20	100	0	80	55	10	10	25	1.64
41332774--41332809	2	18.0	2	100	0	72	50	0	0	50	1.00
41340272--41340902	307	2.1	305	94	1	1102	42	20	11	25	1.85
41343026--41343051	13	2.0	13	100	0	52	76	0	0	23	0.78
41343741--41343775	6	5.8	6	96	0	52	28	34	22	14	1.93
41351083--41351125	21	2.0	21	95	0	77	16	30	4	48	1.66
41351081--41351132	21	2.3	23	80	16	72	23	26	3	46	1.69
41356090--41356115	13	2.0	13	100	0	52	30	15	7	46	1.74
41357922--41358176	45	5.4	45	86	10	366	28	23	16	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141