genome.fa.s1.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  93  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30134112--30134192	28	2.9	28	94	3	137	24	27	23	24	2.00
30135753--30135805	23	2.2	24	83	6	63	15	7	24	52	1.68
30136678--30136716	20	1.9	21	89	5	62	76	2	0	20	0.90
30136678--30136734	21	2.7	21	81	13	55	71	3	3	21	1.15
30144602--30144799	50	3.8	52	85	6	251	23	31	20	25	1.98
30159566--30159682	62	1.9	59	87	5	171	43	3	4	48	1.39
30167500--30167604	54	1.9	55	88	5	160	16	23	28	31	1.96
30170062--30170096	6	5.8	6	86	0	52	14	5	0	80	0.89
30170333--30170372	19	2.1	19	100	0	80	42	10	0	47	1.37
30173470--30173508	16	2.4	17	82	8	53	35	12	33	17	1.88
30175403--30175433	16	1.9	16	100	0	62	29	0	32	38	1.57
30184625--30184659	18	2.0	18	88	5	54	14	45	28	11	1.79
30186574--30186621	23	2.0	24	92	4	80	37	10	18	33	1.85
30186582--30186633	23	2.5	21	81	12	63	36	7	15	40	1.76
30186707--30186732	9	2.9	9	100	0	52	53	0	11	34	1.37
30187464--30187504	23	1.9	21	85	14	57	43	7	9	39	1.65
30188084--30188340	85	3.1	83	86	3	320	29	18	17	34	1.94
30188287--30188397	48	2.3	48	98	0	213	35	16	13	35	1.88
30188947--30189055	28	3.9	28	76	2	119	51	5	19	23	1.67
30188903--30189068	56	2.9	56	76	5	156	52	6	17	23	1.68
30188944--30189066	28	4.4	27	70	16	97	50	5	18	25	1.69
30193324--30193397	38	1.9	38	88	0	112	32	20	14	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30194441--30194480	14	2.9	14	84	0	53	32	7	17	42	1.77
30194464--30194503	20	2.0	20	90	0	62	27	10	12	50	1.72
30194449--30194515	34	1.9	35	90	3	109	31	8	13	46	1.74
30194443--30194519	14	5.0	15	71	20	52	32	9	15	42	1.78
30197313--30197361	18	2.7	18	70	0	53	38	4	44	12	1.61
30200682--30200799	59	2.0	59	93	0	200	29	14	22	33	1.94
30201121--30201160	17	2.4	17	86	0	53	30	25	17	27	1.97
30203493--30203520	14	2.0	14	100	0	56	57	7	14	21	1.61
30212862--30212900	12	3.2	12	85	0	51	15	23	10	51	1.73
30213159--30213297	50	2.8	50	77	2	136	24	28	19	27	1.98
30217147--30217183	13	2.8	13	87	0	56	45	5	13	35	1.66
30219037--30219081	20	2.1	22	84	12	58	15	6	8	68	1.36
30223015--30223059	21	2.1	22	84	12	58	68	8	6	15	1.36
30229170--30229224	27	2.0	27	85	0	74	29	18	14	38	1.90
30231909--30231954	21	2.2	21	84	7	58	19	30	0	50	1.48
30231909--30231952	20	2.2	20	84	8	54	20	29	0	50	1.49
30246275--30246309	17	2.1	17	94	0	61	37	20	11	31	1.88
30249034--30249367	51	6.7	51	77	9	280	26	14	27	31	1.95
30249137--30249404	100	2.7	100	91	1	403	27	11	27	33	1.92
30256419--30256448	16	1.9	16	93	6	53	30	0	20	50	1.49
30258219--30258382	86	1.9	86	85	0	229	31	18	14	35	1.91
30268881--30269230	138	2.5	138	92	0	601	44	5	6	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30270619--30270653	15	2.2	15	90	10	52	71	2	5	20	1.19
30277179--30277591	206	2.0	207	99	0	810	41	10	12	36	1.77
30291514--30291604	41	2.2	41	90	5	139	63	12	5	18	1.46
30294290--30294580	109	2.7	109	85	1	404	30	22	20	26	1.98
30294618--30294699	40	2.0	40	85	0	110	39	26	18	15	1.91
30308340--30308383	19	2.3	19	88	0	61	34	15	22	27	1.95
30312112--30312192	35	2.3	35	85	10	103	32	19	17	30	1.95
30314499--30314537	18	2.2	18	86	9	53	41	17	2	38	1.64
30324655--30324680	10	2.6	10	100	0	52	26	0	38	34	1.57
30331131--30331173	11	3.9	11	79	8	52	58	6	6	27	1.50
30335527--30335613	42	2.1	42	86	4	122	24	24	33	18	1.97
30341553--30341580	13	2.2	13	100	0	56	35	7	21	35	1.81
30342684--30342722	21	1.9	20	84	5	51	25	2	23	48	1.63
30356839--30356907	34	2.0	34	86	5	95	28	28	18	23	1.98
30358849--30358888	19	2.1	19	100	0	80	42	0	10	47	1.37
30369763--30369848	27	3.2	27	77	0	100	11	37	27	23	1.89
30387792--30387899	41	2.6	41	88	0	162	35	17	26	20	1.95
30396811--30396878	30	2.2	31	84	2	84	26	19	7	47	1.75
30406234--30406291	28	2.1	28	96	0	107	29	17	10	43	1.82
30408094--30408125	2	16.0	2	100	0	64	50	0	50	0	1.00
30408402--30408487	36	2.2	36	84	10	100	52	2	3	41	1.31
30412187--30412237	27	1.9	27	84	4	68	54	1	1	41	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30414962--30414986	2	12.5	2	100	0	50	52	0	0	48	1.00
30416905--30417004	49	2.0	49	100	0	200	48	22	6	24	1.73
30426136--30426171	18	2.0	18	100	0	72	27	16	33	22	1.95
30430019--30430080	21	3.0	21	77	13	65	37	37	14	11	1.82
30436125--30436157	17	1.9	17	93	0	57	15	12	12	60	1.59
30443825--30443860	11	3.2	11	92	7	63	58	33	0	8	1.28
30443822--30443860	12	3.3	12	92	7	71	56	35	0	7	1.28
30448004--30448048	12	3.8	12	93	0	72	24	6	13	55	1.62
30450384--30450440	27	2.1	27	96	3	105	43	3	10	42	1.56
30450388--30450452	27	2.3	28	86	7	87	44	3	10	41	1.55
30455040--30455087	20	2.5	19	76	6	51	43	4	0	52	1.20
30456395--30456439	4	10.8	4	81	9	54	48	0	2	48	1.13
30456395--30456428	13	2.6	13	100	0	68	47	0	0	52	1.00
30462313--30462357	23	1.9	24	86	4	65	37	35	2	24	1.68
30471521--30471554	16	2.1	16	88	0	50	26	14	11	47	1.79
30473197--30473237	21	2.0	21	85	0	55	34	9	34	21	1.87
30477036--30477060	11	2.3	11	100	0	50	72	8	0	20	1.10
30477983--30478025	21	2.0	21	90	0	68	16	25	16	41	1.88
30478853--30478917	30	2.2	31	80	8	80	21	21	30	26	1.98
30483691--30483742	22	2.5	20	79	17	52	32	7	1	57	1.38
30483875--30483933	31	1.9	31	96	0	109	45	3	6	44	1.47
30487176--30487210	18	1.9	18	88	11	54	0	17	2	80	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30487184--30487212	13	2.3	13	94	5	51	0	17	0	82	0.66
30492172--30492511	51	6.7	50	77	8	294	31	27	16	25	1.96
30492175--30492513	101	3.3	100	80	6	328	30	26	16	25	1.97
30492172--30492510	152	2.2	152	90	0	534	31	26	16	25	1.96
30494495--30494556	27	2.2	28	94	2	108	59	0	25	14	1.35
30495710--30495756	13	3.7	12	86	11	58	27	2	12	57	1.47
30499738--30499788	6	8.5	6	100	0	102	31	0	17	50	1.46
30501043--30501160	57	2.1	57	95	0	209	24	19	15	40	1.90
30502626--30502747	48	2.5	48	93	2	210	24	21	30	23	1.99
30502626--30502799	48	3.6	48	89	0	186	25	20	30	23	1.98
30504314--30504377	30	2.1	30	94	0	110	42	7	18	31	1.79
30505129--30505360	114	2.0	114	94	1	412	26	10	30	32	1.90
30505243--30505579	186	1.8	186	96	0	629	27	11	27	33	1.92
30508596--30508765	48	3.6	47	81	1	169	26	20	28	24	1.99
30515804--30515922	57	2.1	57	87	10	172	43	9	21	25	1.82
30517306--30517400	39	2.5	39	80	12	101	8	8	7	75	1.18
30518938--30519065	65	2.0	65	90	0	202	26	15	14	43	1.85
30519961--30519991	5	6.2	5	100	0	62	0	19	0	80	0.71
30521237--30521281	23	2.0	23	95	0	81	28	17	24	28	1.97
30522108--30522149	11	3.6	11	81	18	50	69	0	26	4	1.08
30524296--30524375	33	2.4	33	87	0	106	17	23	16	42	1.88
30529592--30529641	26	1.9	26	91	0	82	50	16	6	28	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30530236--30530576	170	2.0	171	99	0	675	36	14	5	43	1.70
30531621--30531669	20	2.5	20	96	0	89	20	22	34	22	1.97
30535004--30535326	163	2.0	163	93	0	547	32	12	20	34	1.90
30543495--30543525	6	5.2	6	100	0	62	16	16	32	35	1.91
30551572--30551630	23	2.7	21	78	19	59	23	6	8	61	1.49
30551776--30551802	14	1.9	14	100	0	54	66	3	7	22	1.33
30553158--30553207	25	2.0	25	100	0	100	52	12	12	24	1.72
30553501--30553538	19	2.0	19	89	0	58	71	2	18	7	1.23
30562700--30562750	26	1.9	27	84	4	68	27	21	17	33	1.96
30567406--30567463	30	1.9	30	86	6	82	20	39	0	39	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141