genome.fa.s1.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  113  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36286398--36286960	90	6.4	90	72	6	393	29	9	15	39	1.80
36286684--36286960	30	9.3	30	84	1	344	32	10	16	40	1.82
36295337--36295533	98	2.0	99	96	1	369	28	14	21	34	1.93
36295941--36296077	68	2.0	68	95	0	247	32	13	16	37	1.88
36297762--36297854	44	2.1	46	89	4	145	36	31	4	27	1.76
36297836--36297888	16	3.3	16	91	0	88	24	33	3	37	1.74
36298797--36298849	17	3.2	17	68	10	56	24	9	3	62	1.42
36298795--36298859	32	2.0	32	96	0	121	24	9	3	63	1.39
36305321--36305381	30	2.0	31	87	3	88	19	37	1	40	1.62
36305491--36305530	20	2.0	20	85	9	55	25	30	0	45	1.54
36307023--36307057	18	2.0	18	88	5	54	65	0	5	28	1.15
36307071--36307101	16	1.9	16	93	0	53	35	0	12	51	1.40
36314589--36314621	15	2.1	16	94	5	59	42	12	0	45	1.41
36322475--36322522	23	2.1	23	88	3	71	18	0	27	54	1.44
36322467--36322522	23	2.5	22	82	5	69	19	0	28	51	1.47
36322618--36322842	94	2.4	92	82	10	242	43	2	17	36	1.62
36322571--36322842	95	2.9	94	81	10	268	42	2	16	38	1.62
36322878--36323298	126	3.4	125	89	0	653	33	19	20	26	1.97
36328835--36328881	11	4.3	11	79	17	53	44	0	31	23	1.54
36333824--36333907	33	2.5	33	94	0	150	29	28	11	29	1.92
36334148--36334382	117	2.0	118	94	2	420	55	6	12	25	1.60
36336695--36336762	6	10.8	6	78	12	66	13	5	0	80	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36336694--36336761	27	2.7	26	82	8	77	13	5	0	80	0.87
36336762--36336840	12	6.2	13	77	16	69	0	31	0	68	0.90
36336771--36336840	3	23.0	3	85	8	97	0	31	0	68	0.90
36336941--36336980	19	2.1	19	90	9	64	0	37	0	62	0.95
36337223--36337313	29	3.1	28	84	6	119	43	3	18	34	1.66
36337480--36338658	76	15.5	75	78	9	968	33	19	15	31	1.93
36337484--36338603	228	4.9	228	89	3	1490	34	19	15	31	1.92
36339023--36339727	76	9.3	75	79	8	594	33	19	15	30	1.93
36339023--36339728	152	4.6	153	79	7	688	33	19	15	30	1.93
36339026--36339673	228	2.8	227	80	5	693	34	19	15	30	1.93
36341372--36341455	33	2.5	33	92	0	141	30	27	11	29	1.92
36341583--36341717	44	2.8	49	85	13	208	49	17	17	15	1.80
36351558--36351583	13	2.0	13	100	0	52	30	7	23	38	1.83
36356368--36356451	33	2.5	33	90	0	132	27	29	11	30	1.92
36356944--36357221	138	2.0	139	95	0	495	31	10	19	38	1.86
36361015--36361049	15	2.4	15	90	4	54	57	0	8	34	1.29
36362148--36362190	1	43.0	1	95	0	68	0	4	0	95	0.27
36365156--36365207	24	2.2	24	92	0	86	40	13	13	32	1.83
36365588--36365648	14	4.3	14	80	16	72	44	40	0	14	1.46
36365588--36365648	28	2.1	29	85	8	81	44	40	0	14	1.46
36372481--36372537	28	2.0	28	100	0	114	28	7	10	54	1.60
36374463--36374507	22	2.0	22	86	0	63	55	4	17	22	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36377764--36377801	14	2.6	15	83	8	51	65	2	2	28	1.19
36378046--36378204	41	3.9	41	83	7	191	34	19	21	24	1.96
36378048--36378227	41	4.4	38	77	13	155	33	20	20	26	1.96
36381794--36381832	18	2.2	18	85	0	51	20	30	33	15	1.94
36383851--36383924	19	3.8	19	84	8	96	72	8	8	10	1.27
36383851--36383929	40	2.0	40	92	0	131	72	8	7	11	1.29
36389532--36389591	31	1.9	31	89	0	93	33	11	13	41	1.80
36391986--36392157	42	4.1	42	100	0	344	30	12	14	43	1.82
36392018--36392132	25	5.2	25	58	30	64	31	13	13	41	1.83
36396838--36396865	4	7.0	4	100	0	56	0	25	0	75	0.81
36397355--36397384	15	2.0	15	93	0	51	43	0	13	43	1.43
36398139--36398192	23	2.3	23	96	0	99	31	5	20	42	1.75
36400027--36400226	98	2.0	98	95	1	357	32	16	7	43	1.76
36406856--36406985	27	4.9	27	79	7	131	33	10	20	36	1.87
36406858--36406992	53	2.5	53	74	8	130	31	10	20	37	1.87
36414178--36414327	43	3.5	43	74	7	146	32	25	16	26	1.96
36414159--36414321	84	1.9	85	85	6	224	32	26	16	23	1.96
36419722--36419809	44	2.0	44	93	0	149	43	10	15	30	1.80
36425084--36425127	21	2.1	21	83	8	54	61	6	2	29	1.34
36431080--36431205	65	1.9	65	87	3	182	33	4	22	39	1.75
36431270--36431449	44	4.0	44	80	9	186	27	17	25	30	1.98
36431288--36431444	44	3.6	43	84	11	210	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36431272--36431444	89	1.9	89	92	0	292	27	16	24	30	1.97
36446231--36446284	21	2.6	21	84	0	72	20	18	29	31	1.96
36450770--36450814	11	3.9	11	80	11	54	60	0	4	35	1.17
36451895--36451930	10	3.6	10	100	0	72	50	11	8	30	1.67
36453312--36453357	23	2.0	23	83	8	58	60	0	10	28	1.30
36453491--36453537	23	2.0	24	84	12	62	59	0	8	31	1.27
36453491--36453537	24	2.0	23	88	12	69	59	0	8	31	1.27
36453300--36453659	180	2.0	180	98	0	693	49	6	11	32	1.64
36454475--36454651	30	5.9	30	76	7	155	33	18	5	42	1.72
36454475--36454650	60	2.9	59	79	7	176	34	18	5	42	1.73
36454848--36454894	24	2.0	24	82	0	58	68	4	23	4	1.26
36455005--36455053	20	2.4	21	83	10	66	77	6	16	0	0.96
36454995--36455066	17	4.1	17	79	12	65	76	4	16	2	1.06
36454995--36455067	19	4.1	17	74	13	58	76	4	16	2	1.05
36455190--36455219	9	3.2	9	90	9	51	86	3	10	0	0.67
36455378--36455411	13	2.6	13	100	0	68	88	0	11	0	0.52
36455377--36455413	16	2.3	15	90	9	56	89	0	10	0	0.49
36455558--36455591	13	2.8	12	91	8	59	17	0	5	76	0.98
36455548--36455600	20	2.8	19	77	8	63	18	0	3	77	0.92
36455548--36455588	13	3.0	14	85	7	57	19	0	4	75	0.98
36455713--36455739	9	3.0	9	100	0	54	77	0	0	22	0.76
36457500--36457535	4	9.0	4	87	0	54	27	25	2	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36459611--36459704	32	3.0	31	89	6	145	32	10	14	41	1.81
36466711--36466806	31	3.1	31	95	3	174	31	9	13	45	1.75
36468399--36468443	6	7.5	6	100	0	90	33	0	15	51	1.44
36470168--36470263	31	3.1	31	95	3	174	31	9	13	45	1.75
36471856--36471888	6	5.5	6	100	0	66	33	0	15	51	1.43
36472073--36472110	19	2.0	19	100	0	76	15	42	15	26	1.87
36477383--36477672	144	2.0	144	97	0	553	31	23	10	34	1.88
36478423--36478452	9	3.3	9	90	0	51	0	23	0	76	0.78
36478519--36478560	17	2.5	16	88	7	57	50	9	0	40	1.35
36505933--36505969	19	2.0	18	89	5	56	51	0	5	43	1.24
36509523--36509742	81	2.7	81	97	0	413	38	10	17	33	1.84
36512564--36512609	24	2.0	24	87	8	69	23	0	2	73	0.94
36512560--36512597	13	2.8	14	88	8	60	23	0	0	76	0.79
36525108--36525135	11	2.5	11	100	0	56	25	10	17	46	1.80
36530483--36530532	25	2.0	25	84	7	66	46	6	10	38	1.62
36531259--36531349	23	4.1	23	68	11	82	20	26	6	46	1.75
36531249--36531329	42	1.9	42	92	0	135	22	22	8	46	1.78
36533955--36534026	23	3.1	23	91	0	99	19	29	4	47	1.68
36536823--36536856	17	2.0	17	88	0	50	14	2	11	70	1.27
36536891--36536960	20	3.8	20	72	16	60	38	2	0	58	1.13
36536903--36536940	18	2.0	19	90	10	60	36	0	0	63	0.95
36538177--36538250	32	2.5	30	85	10	91	51	18	2	27	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36538210--36538264	27	2.0	27	86	6	76	50	18	3	27	1.63
36545837--36545865	10	2.7	11	94	5	51	31	24	10	34	1.89
36547522--36547550	12	2.5	12	94	5	51	75	3	6	13	1.13
36547531--36547565	16	2.2	16	90	5	54	74	2	8	14	1.17
36548616--36548648	18	1.9	17	88	11	50	72	6	9	12	1.26
36548595--36548693	30	3.5	28	71	16	78	73	2	16	8	1.16
36548681--36548715	18	1.9	18	88	11	54	57	0	20	22	1.41
36552521--36552587	23	3.2	23	60	27	58	34	34	5	25	1.80
36552513--36552597	39	2.2	39	97	0	161	36	32	9	21	1.85
36554932--36554979	18	2.7	18	83	6	62	25	6	4	64	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141