genome.fa.s1.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  114  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36555236--36555274	20	2.0	20	85	10	53	25	2	12	58	1.47
36564736--36564762	13	2.1	13	100	0	54	33	14	22	29	1.94
36565484--36565664	91	2.0	91	90	0	281	32	25	16	25	1.96
36571753--36572151	23	17.1	23	71	5	273	40	17	12	29	1.86
36571753--36572146	46	8.4	46	75	6	337	40	17	12	28	1.86
36571753--36572151	187	2.1	186	94	2	719	40	17	12	29	1.86
36571753--36572151	93	4.3	93	91	1	638	40	17	12	29	1.86
36572768--36572893	28	4.5	28	86	5	157	29	26	12	30	1.93
36572768--36572893	56	2.2	56	88	5	184	29	26	12	30	1.93
36575606--36575744	50	2.8	50	84	0	179	22	29	22	25	1.99
36578416--36578466	24	2.2	22	79	6	57	19	0	5	74	1.02
36582352--36582386	14	2.5	14	90	0	52	17	2	8	71	1.23
36583935--36583987	21	2.5	21	87	3	79	9	0	11	79	0.94
36588443--36588548	49	2.2	48	83	8	133	25	32	20	21	1.98
36592194--36592230	5	7.8	5	88	11	60	16	0	0	83	0.64
36595676--36595749	34	2.2	34	97	0	139	43	20	20	16	1.88
36605262--36605291	13	2.3	13	94	0	51	33	3	13	50	1.58
36605386--36605728	50	6.8	50	87	0	461	25	22	30	21	1.99
36613032--36613323	50	5.8	50	86	3	390	26	22	30	21	1.99
36633575--36633626	24	2.2	24	85	0	68	38	1	7	51	1.42
36635397--36635653	128	2.0	129	99	0	507	28	19	7	44	1.78
36637927--36637986	30	2.0	30	83	9	77	43	0	38	18	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36638272--36638302	9	3.4	9	90	0	53	38	22	12	25	1.90
36638788--36638846	15	3.6	16	78	14	57	27	3	3	66	1.24
36638789--36638846	17	3.5	16	80	13	55	27	3	3	65	1.25
36638801--36638845	18	2.5	17	86	13	56	33	2	2	62	1.20
36639593--36639630	20	1.9	20	88	0	58	28	15	5	50	1.66
36656260--36656310	5	10.2	5	83	8	68	41	17	0	41	1.50
36657952--36657998	2	23.0	2	91	4	67	44	0	2	53	1.12
36661091--36661135	16	2.8	16	77	9	56	55	0	0	44	0.99
36667332--36667901	44	12.6	44	70	16	203	31	16	21	30	1.96
36667340--36667626	89	3.2	88	73	14	287	29	15	25	30	1.96
36667375--36667718	45	7.6	47	72	18	180	30	16	22	31	1.95
36667470--36667752	41	6.5	41	71	15	183	30	17	20	31	1.96
36667318--36667719	181	2.2	181	93	0	669	30	16	22	30	1.96
36667375--36667673	96	3.2	94	75	12	341	29	15	23	31	1.95
36667735--36667909	49	3.8	48	78	7	166	34	16	20	28	1.94
36667824--36667931	44	2.5	44	83	6	130	34	18	15	31	1.92
36668013--36668135	45	2.8	44	80	2	138	35	17	15	30	1.91
36668013--36668108	44	2.2	44	84	1	120	34	20	13	31	1.92
36669626--36669737	60	1.9	60	81	5	138	33	8	2	54	1.46
36670776--36671067	122	2.4	117	89	5	449	45	2	11	40	1.54
36671206--36671247	20	2.1	20	100	0	84	38	4	19	38	1.73
36670949--36671227	156	1.8	153	82	6	366	45	3	11	39	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36671212--36671259	20	2.4	20	86	6	62	45	2	14	37	1.57
36671054--36671400	176	2.0	176	88	1	525	45	3	11	39	1.58
36674112--36674151	20	2.0	20	85	5	53	27	30	0	42	1.56
36686693--36686733	21	2.0	21	85	9	57	46	2	2	48	1.28
36693930--36693960	4	7.8	4	92	0	53	51	3	22	22	1.62
36705275--36706010	372	2.0	372	94	1	1289	32	17	23	25	1.97
36706420--36706448	12	2.4	12	100	0	58	24	6	24	44	1.77
36708729--36708879	79	1.9	79	84	0	203	44	16	9	29	1.80
36714624--36714673	21	2.4	21	89	0	82	20	34	24	22	1.97
36721034--36721207	86	2.0	87	98	1	341	45	8	12	33	1.72
36723750--36723792	20	2.3	18	84	8	50	27	9	16	46	1.77
36727386--36727446	30	2.0	30	93	0	104	21	21	18	39	1.93
36728674--36728728	21	2.6	21	88	0	83	21	7	40	30	1.81
36728991--36729042	22	2.3	22	77	9	52	50	5	1	42	1.37
36738398--36738449	21	2.5	22	75	9	54	40	1	3	53	1.30
36738849--36738909	26	2.3	27	94	2	106	40	3	0	55	1.16
36738849--36738925	27	2.9	26	88	3	82	41	2	0	55	1.13
36746272--36746302	15	2.1	15	100	0	62	38	6	25	29	1.81
36748682--36748747	22	2.9	21	70	23	53	48	3	1	46	1.26
36749172--36749241	29	2.3	29	85	4	86	21	14	15	48	1.80
36749527--36749563	19	1.9	20	88	5	58	0	27	2	70	1.01
36750685--36750713	15	1.9	15	100	0	58	48	13	6	31	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36753445--36753489	23	2.0	23	82	8	56	55	8	8	26	1.60
36755921--36755958	20	1.9	20	84	10	51	60	0	5	34	1.19
36756338--36756372	14	2.5	14	86	13	54	40	2	5	51	1.40
36757105--36757249	4	36.2	4	98	0	263	22	0	26	50	1.49
36757973--36758011	16	2.4	16	91	8	62	30	23	7	38	1.83
36759188--36759458	97	2.9	94	83	7	352	41	1	16	39	1.60
36759517--36759791	126	2.2	126	91	0	442	32	17	19	29	1.95
36762879--36763036	78	2.0	79	98	1	309	32	18	21	26	1.97
36764874--36764932	21	2.8	20	80	7	73	15	22	27	35	1.94
36766973--36767003	13	2.4	13	94	0	53	67	0	0	32	0.91
36768588--36768639	24	2.2	24	92	0	86	34	1	7	55	1.39
36772742--36772767	6	4.3	6	100	0	52	50	34	15	0	1.45
36778142--36778182	12	3.5	12	87	9	50	75	12	0	12	1.05
36778142--36778183	11	3.7	11	90	3	57	73	11	0	14	1.09
36778529--36778579	25	2.0	25	100	0	102	39	3	7	49	1.51
36778378--36778728	178	2.0	177	84	7	469	31	9	7	51	1.61
36790539--36790686	40	3.7	40	85	2	154	31	23	22	22	1.99
36790554--36790686	40	3.3	39	85	4	167	32	24	21	21	1.98
36790715--36790796	40	2.0	40	90	0	128	29	20	23	26	1.99
36790836--36790878	21	2.0	22	86	4	61	30	0	37	32	1.58
36791031--36791084	14	3.9	14	80	4	65	22	0	31	46	1.52
36791099--36791147	14	3.4	14	82	2	62	20	0	30	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36791031--36791147	7	16.4	7	67	7	56	22	0	29	47	1.57
36791142--36791178	15	2.5	15	91	4	58	18	2	45	32	1.64
36791101--36791201	29	3.5	28	68	8	69	20	0	34	43	1.59
36792223--36792287	22	2.9	22	80	19	73	26	30	1	41	1.65
36792222--36792287	11	5.9	11	75	19	66	25	30	1	42	1.64
36794143--36794182	18	2.2	18	95	0	71	22	30	7	40	1.81
36797828--36798192	125	2.9	125	91	1	597	30	24	15	28	1.96
36798867--36798985	58	2.0	59	84	7	154	28	10	19	42	1.83
36801206--36801261	9	6.2	9	87	0	67	41	19	10	28	1.85
36801973--36802039	23	2.9	23	88	4	91	35	8	23	31	1.86
36802785--36802897	43	2.6	43	88	2	165	26	17	26	29	1.98
36805085--36805118	18	1.9	17	94	5	59	41	0	0	58	0.98
36805719--36805786	36	1.9	34	85	5	91	32	10	11	45	1.74
36808640--36808705	33	2.0	33	100	0	132	51	6	21	21	1.69
36808948--36809035	31	3.0	30	66	16	76	36	17	22	23	1.94
36808958--36809052	31	3.3	26	66	17	64	37	17	23	21	1.94
36808909--36809081	60	2.9	57	76	13	172	40	16	19	23	1.91
36809925--36810011	39	2.2	40	85	6	115	26	24	27	21	1.99
36813741--36813784	17	2.5	17	85	7	52	50	13	2	34	1.55
36828687--36828728	19	2.2	20	82	4	50	50	0	2	47	1.14
36829193--36829369	73	2.4	73	88	1	248	16	20	18	44	1.87
36829253--36829379	37	3.5	36	70	11	105	16	22	18	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36829215--36829347	37	3.7	35	70	13	92	16	21	19	42	1.89
36841785--36841827	21	1.9	24	86	13	65	41	6	4	46	1.51
36843326--36843375	21	2.5	20	78	15	59	58	4	2	36	1.29
36848809--36848868	28	2.2	27	79	8	68	41	10	5	43	1.60
36849377--36849421	23	1.9	24	86	4	65	17	37	22	22	1.94
36850199--36850241	22	2.0	21	82	13	52	9	6	9	74	1.22
36851397--36851539	71	2.0	70	90	4	225	30	18	16	35	1.92
36854794--36854845	25	2.1	25	85	7	70	0	23	3	73	1.00
36862114--36862154	4	10.0	4	85	15	57	24	2	0	73	0.96
36864911--36864983	33	2.2	32	83	9	85	53	1	5	39	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141