genome.fa.s1.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  123  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39249807--39249838	6	5.5	6	92	7	57	15	0	0	84	0.63
39249807--39249838	11	2.8	11	95	4	55	15	0	0	84	0.63
39250355--39250387	14	2.4	14	90	5	50	75	0	3	21	0.93
39258152--39258211	4	15.0	4	100	0	120	25	0	25	50	1.50
39261982--39262021	4	10.0	4	100	0	80	50	25	0	25	1.50
39279957--39280024	31	2.2	31	87	10	95	39	1	13	45	1.52
39280243--39280335	45	2.1	44	90	6	143	36	24	3	35	1.72
39280317--39280355	16	2.4	16	82	0	51	30	23	5	41	1.76
39280653--39280699	19	2.4	19	82	10	51	61	4	2	31	1.27
39289094--39289164	29	2.4	30	80	15	78	36	1	4	57	1.27
39293264--39293337	3	26.3	3	80	13	86	68	1	1	28	1.05
39293264--39293337	21	3.8	20	84	8	98	68	1	1	28	1.05
39298402--39298440	19	2.2	19	86	9	55	38	5	2	53	1.37
39303059--39303108	25	2.0	25	88	0	73	6	32	4	58	1.41
39306849--39306903	21	2.6	21	82	0	74	32	32	10	23	1.90
39313673--39313697	12	2.1	12	100	0	50	32	36	8	24	1.84
39324321--39324443	64	1.9	65	81	1	149	44	11	17	26	1.83
39325717--39325742	2	13.0	2	100	0	52	50	0	0	50	1.00
39330072--39330107	2	18.5	2	94	5	65	50	0	0	50	1.00
39339457--39339489	2	16.5	2	100	0	66	51	0	48	0	1.00
39340182--39340213	3	10.7	3	100	0	64	34	65	0	0	0.93
39353319--39353351	14	2.4	14	95	5	59	51	33	0	15	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39353450--39353484	10	3.4	10	88	4	52	88	0	11	0	0.51
39357293--39357337	21	2.1	21	83	0	54	28	44	24	2	1.66
39357604--39357723	47	2.5	48	80	8	154	41	6	5	45	1.54
39357783--39358004	95	2.4	94	82	2	257	39	18	3	39	1.68
39362570--39362603	16	2.2	15	89	5	50	44	2	0	52	1.16
39367939--39367978	21	1.9	21	89	0	62	67	0	2	30	1.04
39369549--39369579	6	5.2	6	100	0	62	48	0	0	51	1.00
39369587--39369652	26	2.5	27	90	7	100	39	0	4	56	1.20
39370572--39370604	18	1.9	17	88	11	50	48	0	3	48	1.17
39372969--39373016	24	2.0	23	84	11	62	72	0	2	25	0.95
39379885--39379940	26	2.2	25	84	6	76	32	14	10	42	1.80
39380171--39380237	30	2.3	29	86	2	89	44	16	10	28	1.80
39380228--39380276	9	5.4	9	85	9	73	40	20	12	26	1.87
39381343--39381510	31	5.5	30	68	11	108	52	4	3	39	1.40
39381340--39381504	61	2.7	61	90	3	253	51	4	3	40	1.41
39381374--39381477	30	3.4	31	71	7	97	50	5	2	41	1.41
39397712--39398198	172	2.8	173	82	5	529	30	11	18	39	1.86
39402686--39402780	48	2.0	48	91	0	154	30	21	16	31	1.95
39410579--39410624	24	1.9	24	90	0	74	6	28	0	65	1.17
39410584--39410639	27	2.1	26	86	3	76	5	32	0	62	1.18
39413457--39413492	17	2.0	19	89	10	58	38	2	11	47	1.54
39414022--39414065	8	5.5	8	81	7	54	18	0	0	81	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39414022--39414070	25	2.0	25	96	4	91	24	0	0	75	0.80
39414349--39414380	15	2.1	15	100	0	64	46	15	12	25	1.81
39421112--39421250	69	2.0	69	100	0	278	24	17	18	39	1.92
39422280--39422343	32	2.0	33	87	3	94	29	20	31	18	1.96
39424045--39424142	30	3.3	30	83	0	115	67	8	2	22	1.28
39424103--39424142	19	2.1	19	86	9	55	75	7	0	17	1.03
39424078--39424139	11	5.9	11	75	11	67	69	8	1	20	1.23
39424105--39424146	11	3.8	11	93	0	57	73	7	0	19	1.05
39435859--39435928	17	4.1	17	70	7	52	57	1	2	38	1.23
39435894--39435947	24	2.2	25	80	9	67	57	0	1	40	1.09
39435864--39435929	35	1.9	33	85	11	89	59	1	3	36	1.22
39435923--39435962	17	2.4	16	88	12	55	50	0	0	50	1.00
39438799--39438854	21	2.7	21	91	0	94	25	8	37	28	1.86
39445334--39445359	11	2.4	11	100	0	52	92	0	0	7	0.39
39452424--39452457	17	2.0	17	94	0	59	26	23	8	41	1.83
39463325--39463380	28	2.0	29	85	3	78	12	0	32	55	1.37
39463912--39463951	21	1.9	21	89	0	62	55	0	0	45	0.99
39466657--39466697	15	2.7	15	88	3	55	43	4	0	51	1.23
39468361--39468405	24	1.9	23	82	13	56	60	11	6	22	1.54
39471064--39471103	14	3.0	14	85	10	57	55	0	0	45	0.99
39471074--39471119	18	2.6	17	93	6	74	56	0	0	43	0.99
39471398--39471426	10	2.7	11	89	10	51	17	27	0	55	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39472515--39472546	7	4.6	7	100	0	64	28	0	12	59	1.34
39473195--39473229	18	1.9	18	94	0	61	25	31	8	34	1.86
39473651--39473737	44	2.0	45	90	2	140	37	0	12	49	1.41
39473705--39473823	25	4.7	25	93	2	211	45	0	14	39	1.51
39473908--39473964	29	2.0	29	100	0	114	45	29	0	24	1.53
39473951--39473996	22	2.2	20	88	11	67	45	28	0	26	1.54
39474015--39474712	72	9.7	72	99	0	1342	49	21	1	27	1.58
39474962--39475078	23	4.9	23	77	20	132	45	25	0	29	1.54
39477629--39477685	21	2.5	23	72	8	55	5	40	1	52	1.34
39480605--39480633	2	14.5	2	100	0	58	48	0	0	51	1.00
39488844--39488913	29	2.3	29	82	4	77	34	8	14	42	1.76
39501910--39502924	507	2.0	508	99	0	2023	39	14	11	34	1.82
39513464--39513503	18	2.2	18	86	0	53	62	5	2	30	1.29
39523893--39523936	16	2.6	16	85	7	52	25	2	20	52	1.58
39530269--39530302	15	2.3	15	89	0	50	67	0	2	29	1.05
39531522--39531568	21	2.2	21	96	0	85	23	10	36	29	1.89
39535592--39535638	3	15.7	3	79	16	53	61	0	4	34	1.15
39535593--39535634	15	2.7	16	86	13	61	59	0	4	35	1.19
39535592--39535638	21	2.4	19	82	10	60	61	0	4	34	1.15
39535592--39535638	24	2.0	24	87	8	69	61	0	4	34	1.15
39536881--39536922	5	8.6	5	94	2	68	85	0	14	0	0.59
39536994--39537031	18	2.1	18	85	9	51	47	7	10	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39545773--39545797	8	3.1	8	100	0	50	0	12	36	52	1.39
39549077--39549160	37	2.3	37	95	2	152	38	2	16	42	1.61
39550508--39550716	41	5.1	41	88	0	265	22	18	28	31	1.97
39554776--39554888	43	2.6	43	88	0	163	21	15	28	35	1.93
39554907--39555175	43	6.3	43	88	0	367	23	16	28	31	1.96
39554790--39555005	115	1.9	115	84	0	288	22	15	29	32	1.94
39558420--39558455	18	1.9	19	94	5	65	44	11	19	25	1.83
39558447--39558653	45	4.6	45	93	1	326	39	18	19	22	1.93
39558440--39558674	45	5.2	45	92	0	317	40	17	19	22	1.91
39562318--39562364	23	2.0	23	92	8	78	36	0	2	61	1.08
39582087--39582150	29	2.2	29	97	0	119	42	6	18	32	1.76
39583846--39583897	20	2.5	20	81	3	59	26	5	5	61	1.42
39584137--39584234	29	3.3	29	70	18	85	39	12	10	37	1.77
39594017--39594061	3	15.0	3	90	9	74	33	0	0	66	0.92
39597140--39597183	11	3.9	11	80	16	54	40	0	2	56	1.11
39597141--39597183	10	3.9	10	80	19	50	41	0	2	55	1.12
39598195--39598436	126	1.9	126	95	0	439	45	11	16	26	1.82
39602997--39603085	46	1.9	46	95	0	160	39	8	23	28	1.85
39605361--39605385	13	1.9	13	100	0	50	32	8	20	40	1.81
39606919--39607074	43	3.6	43	85	0	177	31	26	16	25	1.97
39606919--39607094	86	2.0	86	82	2	210	31	28	15	24	1.96
39606917--39607094	43	4.1	43	83	1	151	32	28	15	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39613122--39613173	14	3.6	14	82	5	68	36	38	0	25	1.56
39613122--39613171	15	3.5	15	83	8	68	38	36	0	26	1.57
39613515--39613627	40	2.8	42	84	9	135	32	28	18	20	1.96
39614037--39614275	72	3.3	72	90	2	376	54	15	6	23	1.63
39615895--39615944	3	17.3	3	75	8	50	38	4	0	58	1.17
39620566--39620610	12	3.8	12	85	8	65	80	0	20	0	0.72
39620873--39621092	107	2.1	107	86	3	300	26	17	7	48	1.73
39622086--39622220	44	3.0	44	65	14	105	28	26	24	20	1.99
39621975--39622293	89	3.6	89	88	1	460	30	24	23	21	1.99
39622755--39622844	44	2.0	44	84	0	117	36	17	17	27	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141