genome.fa.s1.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  43  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13528546--13528585	18	2.2	18	86	0	53	15	30	10	45	1.78
13532150--13532439	125	2.3	125	89	2	465	25	23	20	31	1.98
13534002--13534049	21	2.2	22	85	3	62	47	0	4	47	1.21
13534313--13534382	26	2.8	25	77	12	63	30	1	1	67	1.08
13540445--13540469	2	12.5	2	100	0	50	52	0	0	48	1.00
13546475--13546503	14	2.0	15	93	6	51	27	0	3	68	1.05
13548238--13548312	31	2.4	30	80	12	80	52	8	0	40	1.31
13560344--13560403	10	5.9	10	77	9	59	63	5	3	28	1.31
13561638--13561709	30	2.4	30	97	0	135	25	23	25	26	2.00
13562000--13562085	9	9.4	9	83	7	57	31	10	18	39	1.85
13562000--13562085	27	3.2	26	77	14	93	31	10	18	39	1.85
13562128--13562161	13	2.6	13	100	0	68	32	29	8	29	1.87
13562392--13562436	21	2.1	21	84	8	56	42	0	35	22	1.54
13562472--13562517	9	5.1	9	89	0	74	28	10	15	45	1.79
13562472--13562517	18	2.6	18	100	0	92	28	10	15	45	1.79
13562570--13562600	9	3.4	9	90	0	53	38	22	12	25	1.90
13563066--13563116	13	3.8	13	78	2	57	25	5	5	62	1.41
13566501--13566595	49	1.9	49	89	0	145	40	9	12	37	1.76
13566501--13566608	49	2.2	49	85	3	128	40	9	12	37	1.76
13566781--13566822	22	2.0	22	85	4	59	64	2	0	33	1.07
13572780--13572897	3	40.3	3	69	21	65	62	5	3	28	1.32
13572731--13572821	20	4.2	21	74	16	78	64	5	5	24	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13573535--13573570	13	2.8	13	86	0	54	75	5	19	0	1.00
13573531--13573586	20	2.9	18	77	12	58	71	7	21	0	1.09
13576684--13576828	50	2.9	50	80	4	166	27	21	28	22	1.99
13585066--13585095	15	2.0	15	100	0	60	33	20	13	33	1.91
13585031--13585127	50	2.0	47	86	6	131	34	19	21	24	1.97
13585081--13585285	32	6.4	32	87	0	284	39	18	20	20	1.93
13585081--13585285	96	2.1	96	91	0	329	39	18	20	20	1.93
13590133--13590159	2	13.5	2	100	0	54	0	48	0	51	1.00
13591153--13591286	71	1.9	70	96	1	250	20	18	9	50	1.75
13592279--13592310	14	2.3	14	100	0	64	31	9	34	25	1.87
13597402--13597426	10	2.5	10	100	0	50	24	0	0	76	0.80
13598548--13598870	161	2.0	162	98	0	630	39	15	13	31	1.86
13600060--13600095	18	2.0	18	89	10	56	55	33	2	8	1.44
13607095--13607124	14	2.2	14	94	5	53	53	0	0	46	1.00
13610631--13610927	39	7.6	39	84	2	328	17	17	28	37	1.92
13610822--13610943	39	3.1	39	75	6	113	18	18	27	35	1.94
13622409--13622442	13	2.7	13	95	4	61	20	0	0	79	0.73
13622404--13622433	8	3.9	8	91	8	53	20	0	0	80	0.72
13627112--13627372	44	5.7	44	70	17	181	33	19	18	28	1.95
13627117--13627425	94	3.3	94	84	2	406	34	19	17	28	1.94
13627903--13628049	50	3.1	49	67	15	135	30	17	20	31	1.96
13627434--13628170	94	7.9	94	79	3	678	33	17	18	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13627470--13628232	375	2.0	374	79	5	824	33	17	18	30	1.94
13628438--13628470	17	1.9	17	100	0	66	78	15	0	6	0.93
13630202--13630299	42	2.3	42	94	0	169	36	11	26	25	1.90
13633818--13633902	9	9.4	9	84	0	98	25	8	23	42	1.82
13633820--13633903	27	3.1	27	85	1	114	23	8	23	44	1.81
13635537--13635576	20	2.0	20	85	4	55	52	5	2	40	1.37
13635692--13635732	20	2.1	19	86	13	57	24	0	2	73	0.96
13637561--13637620	10	6.0	10	78	7	68	63	0	5	31	1.16
13637551--13637617	10	6.8	9	77	13	53	65	1	4	28	1.21
13637563--13637620	20	2.9	21	89	5	84	63	0	5	31	1.16
13637561--13637620	30	2.0	30	87	6	86	63	0	5	31	1.16
13637697--13637747	19	2.8	18	80	11	59	66	1	5	25	1.24
13637919--13637958	21	1.9	21	84	0	53	32	7	5	55	1.50
13637979--13638031	18	2.8	19	72	16	56	43	1	0	54	1.11
13637979--13638031	19	2.9	18	75	22	56	43	1	0	54	1.11
13639424--13639562	73	1.9	73	91	2	226	32	12	19	35	1.89
13641226--13641262	19	1.9	19	94	0	65	18	27	29	24	1.98
13641229--13641274	19	2.4	19	85	7	58	21	23	28	26	1.99
13641899--13641952	25	2.2	25	100	0	108	27	16	16	38	1.90
13642664--13642710	8	5.9	8	75	9	51	55	0	0	44	0.99
13642661--13642721	31	1.9	32	93	3	106	52	0	0	47	1.00
13642666--13642748	9	9.7	9	72	17	52	57	1	2	38	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13646455--13646528	38	1.9	38	100	0	148	37	5	16	40	1.71
13649160--13649263	40	2.6	40	92	1	174	19	30	17	32	1.95
13649987--13650099	54	2.1	54	86	3	156	25	27	27	19	1.99
13652048--13652130	31	2.7	31	77	1	78	43	13	7	36	1.71
13654085--13654487	106	3.8	106	79	4	336	46	19	13	20	1.84
13654190--13654500	106	3.0	104	81	4	358	45	19	12	21	1.84
13659300--13659327	2	14.0	2	100	0	56	50	0	0	50	1.00
13669814--13669877	29	2.2	29	91	0	101	40	1	25	32	1.65
13669911--13669949	18	2.2	18	85	0	51	30	5	7	56	1.49
13673628--13673669	21	2.0	21	90	0	66	30	26	11	30	1.92
13675080--13675109	14	2.1	14	93	0	51	20	13	13	53	1.72
13675140--13675201	30	2.1	30	90	0	97	25	4	12	56	1.56
13675226--13675436	54	3.9	54	100	0	422	28	5	12	52	1.62
13676000--13676042	14	2.9	15	80	12	54	30	2	0	67	1.03
13690061--13690150	31	2.9	30	76	11	92	37	14	13	34	1.85
13692558--13692989	132	3.3	131	92	1	675	30	18	26	25	1.98
13692970--13693169	45	4.4	45	90	0	292	29	16	24	31	1.96
13696226--13696365	44	2.9	50	74	16	132	32	20	20	27	1.97
13696271--13696563	44	6.6	44	72	10	202	30	21	22	26	1.99
13698529--13698573	20	2.2	21	84	11	58	28	11	2	57	1.45
13698612--13698912	107	2.8	107	93	1	498	30	17	17	34	1.93
13702087--13702165	19	4.0	19	74	16	63	31	6	2	59	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13702145--13702194	26	1.9	26	84	8	66	48	2	2	48	1.24
13708324--13708372	6	7.8	6	84	6	62	44	16	20	18	1.86
13708350--13708501	45	3.4	45	91	0	241	41	21	18	19	1.91
13710518--13710576	30	1.9	31	86	3	84	28	22	1	47	1.61
13710518--13710586	30	2.3	31	82	7	79	28	20	4	46	1.70
13713890--13713924	16	2.2	16	100	0	70	51	0	37	11	1.38
13722575--13722602	14	2.0	14	100	0	56	35	7	14	42	1.73
13723836--13724100	69	3.8	69	89	0	368	46	18	9	26	1.79
13723844--13723945	24	4.4	24	69	14	70	50	20	4	24	1.68
13723896--13724014	24	5.0	24	68	9	57	47	18	6	26	1.73
13734404--13734431	3	9.3	3	100	0	56	67	0	0	32	0.91
13737233--13737264	1	32.0	1	100	0	64	100	0	0	0	0.00
13740887--13740931	3	15.0	3	95	0	81	31	0	2	66	1.04
13741849--13741898	17	2.9	17	88	8	66	6	30	0	64	1.18
13742955--13743037	31	2.7	30	76	7	87	48	13	12	26	1.77
13743862--13744175	106	3.1	106	87	10	490	37	13	10	38	1.79
13743978--13744162	94	2.0	92	95	2	334	35	14	11	38	1.82
13744578--13744604	6	4.5	6	100	0	54	85	0	0	14	0.61
13744831--13744870	18	2.4	16	91	8	62	22	5	2	70	1.19
13746223--13746249	6	4.5	6	100	0	54	85	0	0	14	0.61
13746476--13746515	18	2.4	16	91	8	62	22	5	2	70	1.19
13747773--13747801	15	1.9	15	100	0	58	31	20	27	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13752495--13752547	27	2.0	27	96	0	97	20	26	15	37	1.92
13752698--13752729	3	10.7	3	100	0	64	68	31	0	0	0.90
13753068--13753112	22	2.0	22	100	0	90	55	0	8	35	1.31
13756858--13756942	26	3.5	24	76	17	79	62	5	3	28	1.35
13756786--13757181	25	15.4	25	69	15	179	59	4	6	29	1.41
13756913--13757068	56	2.8	53	76	12	154	62	4	5	28	1.36
13756913--13757068	57	2.8	53	74	12	145	62	4	5	28	1.36
13757118--13757189	29	2.4	29	80	15	85	66	0	5	27	1.13
13757424--13757451	7	4.0	7	100	0	56	85	0	0	14	0.59
13758635--13759296	44	14.6	44	69	12	248	30	21	17	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141