genome.fa.s1.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  9  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2637230--2637280	25	2.0	25	100	0	102	58	5	11	23	1.55
2639258--2639317	31	1.9	31	86	6	86	50	6	21	21	1.72
2640465--2640490	2	13.0	2	100	0	52	50	0	50	0	1.00
2642176--2642208	3	11.3	3	93	6	59	69	30	0	0	0.88
2645735--2645777	21	2.0	22	86	9	61	30	0	4	65	1.13
2651056--2651105	25	2.0	25	84	7	66	58	0	4	38	1.17
2651775--2651825	14	3.0	18	70	24	56	47	5	5	41	1.52
2654418--2654474	30	1.9	30	82	13	73	59	15	5	19	1.55
2654985--2655027	21	2.0	21	86	8	61	55	0	2	41	1.12
2657022--2657064	21	2.0	21	86	8	61	53	0	2	44	1.13
2665850--2665901	24	2.2	24	85	0	68	5	13	51	28	1.64
2665867--2665926	30	2.0	30	93	0	102	10	13	51	25	1.71
2665910--2665944	18	1.9	18	94	0	61	14	20	34	31	1.92
2665879--2666152	60	5.0	50	87	8	219	10	13	49	25	1.74
2665928--2666970	30	33.0	30	80	12	958	11	12	51	24	1.72
2665935--2666970	156	6.6	159	84	10	1178	11	12	51	24	1.72
2667909--2667956	20	2.5	18	83	9	60	45	0	16	37	1.48
2667916--2667953	20	1.9	20	94	0	67	44	0	18	36	1.50
2671827--2672137	169	1.8	169	89	1	489	23	16	18	42	1.89
2671966--2672538	188	2.9	193	86	6	775	22	18	16	42	1.89
2677587--2677622	4	9.0	4	93	0	63	47	25	2	25	1.65
2678906--2678936	14	2.3	13	94	5	53	54	16	0	29	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2686441--2686482	14	3.0	14	76	13	50	40	0	0	59	0.97
2691141--2691268	64	2.0	64	85	0	175	35	24	19	20	1.95
2691973--2692016	21	2.0	22	95	4	81	47	22	2	27	1.63
2695404--2696383	36	27.2	36	77	6	880	26	45	5	21	1.74
2695798--2695851	28	1.9	28	96	0	99	25	51	9	12	1.70
2696378--2696553	45	3.9	45	95	0	307	27	48	11	12	1.76
2697667--2697711	23	2.0	23	82	8	56	22	8	6	62	1.48
2698077--2698101	3	8.3	3	100	0	50	68	0	32	0	0.90
2708253--2708463	105	2.0	105	99	0	413	25	28	19	26	1.99
2712380--2713068	231	3.0	230	82	6	825	17	26	11	44	1.83
2738710--2738749	6	6.7	6	100	0	80	52	0	0	47	1.00
2738743--2738789	22	2.1	22	81	14	53	25	6	4	63	1.36
2739103--2739233	60	2.2	60	88	0	199	34	16	9	38	1.82
2743352--2743387	2	18.0	2	94	0	63	2	50	0	47	1.15
2745544--2745783	125	1.9	125	89	1	374	33	16	16	33	1.91
2780104--2780426	176	1.8	176	100	0	646	31	8	24	35	1.86
2787266--2787290	5	5.0	5	100	0	50	80	0	0	20	0.72
2791844--2791979	71	1.9	71	83	3	175	25	21	15	38	1.92
2792459--2792558	30	3.2	31	80	14	107	39	6	6	49	1.52
2805501--2805724	111	2.0	112	99	0	441	42	12	9	35	1.76
2806469--2806525	3	19.3	3	96	3	107	31	0	0	68	0.90
2812075--2812723	326	2.0	327	99	0	1291	31	23	14	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2821632--2821660	7	4.1	7	100	0	58	58	0	13	27	1.36
2821921--2821949	13	2.1	14	93	6	51	68	3	0	27	1.05
2828004--2828084	40	2.0	40	97	0	153	20	4	23	50	1.67
2838817--2838876	30	2.0	30	96	0	111	28	20	18	33	1.96
2842056--2842101	20	2.2	21	84	7	58	71	0	0	28	0.86
2842054--2842103	21	2.4	20	80	9	55	72	0	0	28	0.86
2863665--2863703	5	7.6	5	82	5	51	41	0	17	41	1.50
2864250--2864333	24	3.5	24	74	9	73	15	23	21	39	1.92
2864555--2864586	15	2.1	15	100	0	64	46	6	12	34	1.67
2865102--2865349	124	2.0	124	92	0	415	28	8	22	40	1.82
2867269--2867345	38	2.0	38	97	0	145	33	5	32	28	1.79
2877997--2878027	15	2.1	15	93	0	53	35	9	0	54	1.33
2898208--2898246	20	2.0	20	89	0	60	43	2	5	48	1.38
2898584--2898637	19	2.9	18	81	8	63	53	3	1	40	1.29
2900671--2901802	584	1.9	583	94	0	1969	41	9	12	37	1.74
2903217--2903966	374	2.0	373	97	0	1430	39	9	14	35	1.79
2905488--2905555	33	2.0	34	85	2	93	52	1	0	45	1.09
2906137--2906520	191	2.0	191	94	0	678	40	7	10	42	1.66
2906804--2907711	454	2.0	454	96	0	1672	28	13	17	40	1.88
2907840--2907903	34	1.9	33	83	3	83	51	1	0	46	1.10
2910724--2910787	34	1.9	33	83	3	83	51	1	0	46	1.10
2912752--2912809	30	1.9	30	82	6	73	44	3	3	48	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2913484--2913763	139	2.0	140	97	1	526	37	12	6	43	1.68
2919337--2919393	27	2.1	27	96	0	105	35	14	22	28	1.93
2922888--2922914	2	13.5	2	100	0	54	51	0	0	48	1.00
2930755--2930811	27	2.1	27	96	0	105	35	14	22	28	1.93
2934534--2934560	2	13.5	2	100	0	54	51	0	0	48	1.00
2938720--2938771	26	2.0	26	92	0	86	32	13	17	36	1.89
2939129--2939202	25	3.0	25	75	16	82	28	21	28	21	1.99
2939140--2939215	25	3.1	23	73	14	64	28	19	28	22	1.98
2939249--2939306	27	2.2	25	81	6	71	39	20	17	22	1.92
2953965--2954206	121	2.0	121	99	0	475	39	8	14	37	1.76
2956084--2956180	33	2.8	35	72	20	89	46	3	1	49	1.24
2956361--2956422	13	4.8	13	77	0	70	37	24	4	33	1.77
2957129--2957176	21	2.3	21	96	0	87	43	12	18	25	1.85
2957473--2957510	18	2.1	18	85	9	51	47	13	5	34	1.65
2960165--2960197	3	11.0	3	100	0	66	66	0	0	33	0.92
2966759--2966787	15	1.9	15	100	0	58	58	0	6	34	1.25
2984233--2984610	199	1.9	197	80	8	446	44	7	14	32	1.73
2989608--2989681	22	3.3	22	84	1	94	28	10	17	43	1.83
2993152--2993219	24	3.0	22	77	8	73	23	20	16	39	1.91
2993131--2993219	46	2.0	43	84	6	115	22	20	17	39	1.92
3000199--3000250	26	2.0	26	100	0	104	30	15	26	26	1.96
3010036--3010103	24	3.0	22	72	8	73	19	16	20	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3010217--3010270	21	2.8	19	83	8	65	25	22	24	27	2.00
3014012--3014051	14	2.9	14	84	0	53	35	7	15	42	1.75
3014020--3014086	34	1.9	35	84	3	91	34	8	10	46	1.70
3014035--3014074	20	2.0	20	85	0	53	32	10	7	50	1.64
3017199--3017257	28	2.1	27	96	3	109	47	11	10	30	1.73
3021111--3021167	24	2.4	24	97	2	107	49	22	0	28	1.50
3021364--3021515	77	2.0	78	98	1	297	59	2	9	28	1.42
3021373--3021539	77	2.2	76	91	4	264	62	2	8	26	1.36
3035294--3035375	25	3.3	24	78	10	85	26	18	21	32	1.97
3048217--3048253	18	2.0	20	89	10	60	29	0	18	51	1.47
3048486--3048630	23	6.3	23	80	0	155	25	18	23	32	1.97
3048487--3048630	46	3.1	46	84	4	191	25	18	23	32	1.97
3048486--3048630	69	2.1	69	81	0	173	25	18	23	32	1.97
3058021--3058074	26	2.1	26	100	0	108	25	14	27	31	1.95
3065722--3065851	45	2.9	43	79	5	143	39	12	23	25	1.89
3075245--3075438	28	6.8	29	70	5	126	38	20	13	27	1.90
3075236--3075438	57	3.5	57	82	1	199	37	20	14	27	1.91
3077603--3077642	20	2.0	20	90	0	62	42	5	20	32	1.73
3082469--3082532	33	1.9	33	90	0	101	29	10	25	34	1.90
3082506--3082728	61	3.7	61	87	0	293	34	14	26	25	1.94
3092210--3092305	50	1.9	50	93	0	165	23	15	31	29	1.96
3097872--3097904	11	2.8	12	90	9	50	36	15	12	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3104109--3104494	50	7.7	50	90	0	565	30	24	16	29	1.96
3108496--3108564	29	2.3	30	85	7	97	17	26	15	40	1.89
3108496--3108575	29	2.7	29	80	16	85	20	23	15	41	1.89
3108562--3108746	30	6.2	30	75	8	128	24	22	12	40	1.88
3108441--3108746	118	2.6	117	84	4	391	22	23	14	39	1.90
3117115--3117157	20	2.2	20	87	8	61	79	9	6	4	1.06
3119452--3119490	21	1.9	20	84	5	51	28	2	17	51	1.59
3124982--3125024	15	2.6	17	82	7	54	32	20	2	44	1.65
3130478--3130546	22	3.1	22	81	8	86	18	14	14	52	1.75
3131919--3131967	17	2.8	18	87	3	64	51	4	0	44	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141